Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G26:G14
Extra
PDB:
ATOM 1 O3' G A 25 2.245 -41.151 -3.891 1.00 12.12 O
ATOM 2 P U A 26 3.576 -40.300 -4.193 1.00 16.33 P
ATOM 3 OP1 U A 26 4.187 -40.711 -5.491 1.00 16.08 O
ATOM 4 OP2 U A 26 4.404 -40.323 -2.959 1.00 14.24 O
ATOM 5 O5' U A 26 2.989 -38.836 -4.394 1.00 15.97 O
ATOM 6 C5' U A 26 3.558 -37.744 -3.707 1.00 17.82 C
ATOM 7 C4' U A 26 2.490 -36.787 -3.232 1.00 17.82 C
ATOM 8 O4' U A 26 1.362 -37.511 -2.630 1.00 18.43 O
ATOM 9 C3' U A 26 2.990 -35.847 -2.144 1.00 16.92 C
ATOM 10 O3' U A 26 2.264 -34.635 -2.193 1.00 15.68 O
ATOM 11 C2' U A 26 2.604 -36.606 -0.886 1.00 18.77 C
ATOM 12 O2' U A 26 2.568 -35.847 0.302 1.00 24.67 O
ATOM 13 C1' U A 26 1.214 -37.092 -1.289 1.00 18.97 C
ATOM 14 N1 U A 26 0.692 -38.194 -0.468 1.00 19.01 N
ATOM 15 C2 U A 26 -0.361 -37.900 0.374 1.00 20.78 C
ATOM 16 O2 U A 26 -0.877 -36.800 0.429 1.00 28.36 O
ATOM 17 N3 U A 26 -0.797 -38.940 1.147 1.00 16.76 N
ATOM 18 C4 U A 26 -0.312 -40.224 1.156 1.00 16.26 C
ATOM 19 O4 U A 26 -0.861 -41.069 1.866 1.00 17.13 O
ATOM 20 C5 U A 26 0.770 -40.458 0.251 1.00 14.96 C
ATOM 21 C6 U A 26 1.224 -39.456 -0.514 1.00 15.31 C
ATOM 22 P G A 27 2.739 -33.446 -3.166 1.00 21.07 P
ATOM 23 OP1 G A 27 4.002 -33.851 -3.821 1.00 15.99 O
ATOM 24 OP2 G A 27 2.694 -32.166 -2.396 1.00 22.13 O
ATOM 25 O5' G A 27 1.562 -33.377 -4.241 1.00 15.00 O
TER
ATOM 1 O3' A B 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 2 P U B 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 3 OP1 U B 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 4 OP2 U B 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 5 O5' U B 14 -6.014 -43.834 7.057 1.00 19.42 O
ATOM 6 C5' U B 14 -7.351 -43.342 7.076 1.00 17.40 C
ATOM 7 C4' U B 14 -7.900 -43.260 5.672 1.00 18.07 C
ATOM 8 O4' U B 14 -7.319 -42.117 4.978 1.00 18.22 O
ATOM 9 C3' U B 14 -7.597 -44.465 4.786 1.00 17.98 C
ATOM 10 O3' U B 14 -8.670 -44.626 3.870 1.00 17.04 O
ATOM 11 C2' U B 14 -6.400 -43.975 3.980 1.00 18.22 C
ATOM 12 O2' U B 14 -6.193 -44.691 2.779 1.00 17.76 O
ATOM 13 C1' U B 14 -6.864 -42.547 3.715 1.00 18.13 C
ATOM 14 N1 U B 14 -5.923 -41.562 3.155 1.00 17.19 N
ATOM 15 C2 U B 14 -6.478 -40.422 2.607 1.00 16.58 C
ATOM 16 O2 U B 14 -7.688 -40.220 2.585 1.00 18.52 O
ATOM 17 N3 U B 14 -5.574 -39.535 2.077 1.00 12.52 N
ATOM 18 C4 U B 14 -4.204 -39.671 2.029 1.00 10.78 C
ATOM 19 O4 U B 14 -3.537 -38.809 1.467 1.00 8.31 O
ATOM 20 C5 U B 14 -3.698 -40.874 2.613 1.00 11.57 C
ATOM 21 C6 U B 14 -4.552 -41.757 3.150 1.00 16.14 C
ATOM 22 P A B 15 -10.049 -45.278 4.356 1.00 20.50 P
ATOM 23 OP1 A B 15 -9.884 -45.678 5.777 1.00 20.19 O
ATOM 24 OP2 A B 15 -10.430 -46.297 3.342 1.00 20.68 O
ATOM 25 O5' A B 15 -11.103 -44.081 4.283 1.00 18.89 O
TER
ATOM 2 P U A 26 3.576 -40.300 -4.193 1.00 16.33 P
ATOM 3 OP1 U A 26 4.187 -40.711 -5.491 1.00 16.08 O
ATOM 4 OP2 U A 26 4.404 -40.323 -2.959 1.00 14.24 O
ATOM 5 O5' U A 26 2.989 -38.836 -4.394 1.00 15.97 O
ATOM 6 C5' U A 26 3.558 -37.744 -3.707 1.00 17.82 C
ATOM 7 C4' U A 26 2.490 -36.787 -3.232 1.00 17.82 C
ATOM 8 O4' U A 26 1.362 -37.511 -2.630 1.00 18.43 O
ATOM 9 C3' U A 26 2.990 -35.847 -2.144 1.00 16.92 C
ATOM 10 O3' U A 26 2.264 -34.635 -2.193 1.00 15.68 O
ATOM 11 C2' U A 26 2.604 -36.606 -0.886 1.00 18.77 C
ATOM 12 O2' U A 26 2.568 -35.847 0.302 1.00 24.67 O
ATOM 13 C1' U A 26 1.214 -37.092 -1.289 1.00 18.97 C
ATOM 14 N1 U A 26 0.692 -38.194 -0.468 1.00 19.01 N
ATOM 15 C2 U A 26 -0.361 -37.900 0.374 1.00 20.78 C
ATOM 16 O2 U A 26 -0.877 -36.800 0.429 1.00 28.36 O
ATOM 17 N3 U A 26 -0.797 -38.940 1.147 1.00 16.76 N
ATOM 18 C4 U A 26 -0.312 -40.224 1.156 1.00 16.26 C
ATOM 19 O4 U A 26 -0.861 -41.069 1.866 1.00 17.13 O
ATOM 20 C5 U A 26 0.770 -40.458 0.251 1.00 14.96 C
ATOM 21 C6 U A 26 1.224 -39.456 -0.514 1.00 15.31 C
ATOM 22 P G A 27 2.739 -33.446 -3.166 1.00 21.07 P
ATOM 23 OP1 G A 27 4.002 -33.851 -3.821 1.00 15.99 O
ATOM 24 OP2 G A 27 2.694 -32.166 -2.396 1.00 22.13 O
ATOM 25 O5' G A 27 1.562 -33.377 -4.241 1.00 15.00 O
TER
ATOM 1 O3' A B 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 2 P U B 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 3 OP1 U B 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 4 OP2 U B 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 5 O5' U B 14 -6.014 -43.834 7.057 1.00 19.42 O
ATOM 6 C5' U B 14 -7.351 -43.342 7.076 1.00 17.40 C
ATOM 7 C4' U B 14 -7.900 -43.260 5.672 1.00 18.07 C
ATOM 8 O4' U B 14 -7.319 -42.117 4.978 1.00 18.22 O
ATOM 9 C3' U B 14 -7.597 -44.465 4.786 1.00 17.98 C
ATOM 10 O3' U B 14 -8.670 -44.626 3.870 1.00 17.04 O
ATOM 11 C2' U B 14 -6.400 -43.975 3.980 1.00 18.22 C
ATOM 12 O2' U B 14 -6.193 -44.691 2.779 1.00 17.76 O
ATOM 13 C1' U B 14 -6.864 -42.547 3.715 1.00 18.13 C
ATOM 14 N1 U B 14 -5.923 -41.562 3.155 1.00 17.19 N
ATOM 15 C2 U B 14 -6.478 -40.422 2.607 1.00 16.58 C
ATOM 16 O2 U B 14 -7.688 -40.220 2.585 1.00 18.52 O
ATOM 17 N3 U B 14 -5.574 -39.535 2.077 1.00 12.52 N
ATOM 18 C4 U B 14 -4.204 -39.671 2.029 1.00 10.78 C
ATOM 19 O4 U B 14 -3.537 -38.809 1.467 1.00 8.31 O
ATOM 20 C5 U B 14 -3.698 -40.874 2.613 1.00 11.57 C
ATOM 21 C6 U B 14 -4.552 -41.757 3.150 1.00 16.14 C
ATOM 22 P A B 15 -10.049 -45.278 4.356 1.00 20.50 P
ATOM 23 OP1 A B 15 -9.884 -45.678 5.777 1.00 20.19 O
ATOM 24 OP2 A B 15 -10.430 -46.297 3.342 1.00 20.68 O
ATOM 25 O5' A B 15 -11.103 -44.081 4.283 1.00 18.89 O
TER
Atoms:
C4: (-0.312,-40.224,1.156)
N3: (-0.797,-38.940,1.147)
OP1: (4.187,-40.711,-5.491)
OP2: (4.404,-40.323,-2.959)
C2: (-0.361,-37.900,0.374)
C1': (1.214,-37.092,-1.289)
C3': (2.990,-35.847,-2.144)
O5': (2.989,-38.836,-4.394)
O4': (1.362,-37.511,-2.630)
C5': (3.558,-37.744,-3.707)
P: (3.576,-40.300,-4.193)
C4': (2.490,-36.787,-3.232)
C2': (2.604,-36.606,-0.886)
O2': (2.568,-35.847,0.302)
N1: (0.692,-38.194,-0.468)
O4: (-0.861,-41.069,1.866)
O2: (-0.877,-36.800,0.429)
C6: (1.224,-39.456,-0.514)
C5: (0.770,-40.458,0.251)
O3': (2.264,-34.635,-2.193)
N3: (-0.797,-38.940,1.147)
OP1: (4.187,-40.711,-5.491)
OP2: (4.404,-40.323,-2.959)
C2: (-0.361,-37.900,0.374)
C1': (1.214,-37.092,-1.289)
C3': (2.990,-35.847,-2.144)
O5': (2.989,-38.836,-4.394)
O4': (1.362,-37.511,-2.630)
C5': (3.558,-37.744,-3.707)
P: (3.576,-40.300,-4.193)
C4': (2.490,-36.787,-3.232)
C2': (2.604,-36.606,-0.886)
O2': (2.568,-35.847,0.302)
N1: (0.692,-38.194,-0.468)
O4: (-0.861,-41.069,1.866)
O2: (-0.877,-36.800,0.429)
C6: (1.224,-39.456,-0.514)
C5: (0.770,-40.458,0.251)
O3': (2.264,-34.635,-2.193)
C4: (-4.204,-39.671,2.029)
N3: (-5.574,-39.535,2.077)
OP1: (-6.326,-44.625,9.381)
OP2: (-4.119,-45.118,8.151)
C2: (-6.478,-40.422,2.607)
C1': (-6.864,-42.547,3.715)
C3': (-7.597,-44.465,4.786)
O5': (-6.014,-43.834,7.057)
O4': (-7.319,-42.117,4.978)
C5': (-7.351,-43.342,7.076)
P: (-5.273,-44.213,8.414)
C4': (-7.900,-43.260,5.672)
C2': (-6.400,-43.975,3.980)
O2': (-6.193,-44.691,2.779)
N1: (-5.923,-41.562,3.155)
O4: (-3.537,-38.809,1.467)
O2: (-7.688,-40.220,2.585)
C6: (-4.552,-41.757,3.150)
C5: (-3.698,-40.874,2.613)
O3': (-8.670,-44.626,3.870)
N3: (-5.574,-39.535,2.077)
OP1: (-6.326,-44.625,9.381)
OP2: (-4.119,-45.118,8.151)
C2: (-6.478,-40.422,2.607)
C1': (-6.864,-42.547,3.715)
C3': (-7.597,-44.465,4.786)
O5': (-6.014,-43.834,7.057)
O4': (-7.319,-42.117,4.978)
C5': (-7.351,-43.342,7.076)
P: (-5.273,-44.213,8.414)
C4': (-7.900,-43.260,5.672)
C2': (-6.400,-43.975,3.980)
O2': (-6.193,-44.691,2.779)
N1: (-5.923,-41.562,3.155)
O4: (-3.537,-38.809,1.467)
O2: (-7.688,-40.220,2.585)
C6: (-4.552,-41.757,3.150)
C5: (-3.698,-40.874,2.613)
O3': (-8.670,-44.626,3.870)
Image (generated by PyMOL):