Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12478:12477
Extra
PDB:
ATOM 1 O3' U A2477 38.460 -42.281 54.331 1.00 39.82 O
ATOM 2 P C A2478 39.826 -41.569 53.942 1.00 41.14 P
ATOM 3 OP1 C A2478 39.627 -40.122 54.136 1.00 40.83 O
ATOM 4 OP2 C A2478 40.214 -42.055 52.607 1.00 41.36 O
ATOM 5 O5' C A2478 40.825 -42.108 55.010 1.00 41.16 O
ATOM 6 C5' C A2478 40.697 -41.795 56.375 1.00 40.99 C
ATOM 7 C4' C A2478 41.798 -42.445 57.164 1.00 41.07 C
ATOM 8 O4' C A2478 41.566 -43.877 57.256 1.00 41.38 O
ATOM 9 C3' C A2478 43.185 -42.334 56.558 1.00 41.09 C
ATOM 10 O3' C A2478 43.783 -41.042 56.802 1.00 40.81 O
ATOM 11 C2' C A2478 43.906 -43.505 57.217 1.00 41.31 C
ATOM 12 O2' C A2478 44.215 -43.170 58.548 1.00 41.17 O
ATOM 13 C1' C A2478 42.796 -44.558 57.277 1.00 41.54 C
ATOM 14 N1 C A2478 42.822 -45.588 56.170 1.00 41.85 N
ATOM 15 C2 C A2478 42.116 -45.371 54.968 1.00 41.89 C
ATOM 16 O2 C A2478 41.572 -44.304 54.781 1.00 41.65 O
ATOM 17 N3 C A2478 41.968 -46.233 53.947 1.00 42.17 N
ATOM 18 C4 C A2478 42.549 -47.378 54.076 1.00 42.44 C
ATOM 19 N4 C A2478 42.375 -48.149 52.973 1.00 42.73 N
ATOM 20 C5 C A2478 43.275 -47.718 55.301 1.00 42.43 C
ATOM 21 C6 C A2478 43.361 -46.831 56.313 1.00 42.14 C
ATOM 22 P A A2479 45.219 -40.667 56.182 1.00 37.89 P
ATOM 23 OP1 A A2479 45.311 -39.189 56.068 1.00 37.60 O
ATOM 24 OP2 A A2479 45.364 -41.488 54.969 1.00 38.14 O
ATOM 25 O5' A A2479 46.216 -41.171 57.324 1.00 37.94 O
TER
ATOM 1 O3' U B2476 38.158 -47.217 50.382 1.00 40.40 O
ATOM 2 P U B2477 39.220 -46.040 50.555 1.00 41.03 P
ATOM 3 OP1 U B2477 38.957 -45.091 49.493 1.00 40.93 O
ATOM 4 OP2 U B2477 40.552 -46.654 50.640 1.00 41.15 O
ATOM 5 O5' U B2477 38.812 -45.412 51.939 1.00 40.74 O
ATOM 6 C5' U B2477 37.802 -44.443 52.001 1.00 40.53 C
ATOM 7 C4' U B2477 37.333 -44.242 53.409 1.00 40.36 C
ATOM 8 O4' U B2477 36.953 -45.504 53.979 1.00 40.60 O
ATOM 9 C3' U B2477 38.349 -43.686 54.400 1.00 40.13 C
ATOM 10 O3' U B2477 38.460 -42.281 54.331 1.00 39.82 O
ATOM 11 C2' U B2477 37.777 -44.141 55.735 1.00 40.13 C
ATOM 12 O2' U B2477 36.876 -43.168 56.267 1.00 39.89 O
ATOM 13 C1' U B2477 37.003 -45.414 55.366 1.00 40.46 C
ATOM 14 N1 U B2477 37.675 -46.561 55.865 1.00 40.68 N
ATOM 15 C2 U B2477 37.119 -47.109 56.989 1.00 40.74 C
ATOM 16 O2 U B2477 36.077 -46.708 57.482 1.00 40.63 O
ATOM 17 N3 U B2477 37.811 -48.172 57.494 1.00 40.95 N
ATOM 18 C4 U B2477 38.976 -48.671 56.993 1.00 41.10 C
ATOM 19 O4 U B2477 39.430 -49.618 57.574 1.00 41.30 O
ATOM 20 C5 U B2477 39.526 -48.029 55.841 1.00 41.02 C
ATOM 21 C6 U B2477 38.864 -46.978 55.319 1.00 40.81 C
ATOM 22 P C B2478 39.826 -41.569 53.942 1.00 41.14 P
ATOM 23 OP1 C B2478 39.627 -40.122 54.136 1.00 40.83 O
ATOM 24 OP2 C B2478 40.214 -42.055 52.607 1.00 41.36 O
ATOM 25 O5' C B2478 40.825 -42.108 55.010 1.00 41.16 O
TER
ATOM 2 P C A2478 39.826 -41.569 53.942 1.00 41.14 P
ATOM 3 OP1 C A2478 39.627 -40.122 54.136 1.00 40.83 O
ATOM 4 OP2 C A2478 40.214 -42.055 52.607 1.00 41.36 O
ATOM 5 O5' C A2478 40.825 -42.108 55.010 1.00 41.16 O
ATOM 6 C5' C A2478 40.697 -41.795 56.375 1.00 40.99 C
ATOM 7 C4' C A2478 41.798 -42.445 57.164 1.00 41.07 C
ATOM 8 O4' C A2478 41.566 -43.877 57.256 1.00 41.38 O
ATOM 9 C3' C A2478 43.185 -42.334 56.558 1.00 41.09 C
ATOM 10 O3' C A2478 43.783 -41.042 56.802 1.00 40.81 O
ATOM 11 C2' C A2478 43.906 -43.505 57.217 1.00 41.31 C
ATOM 12 O2' C A2478 44.215 -43.170 58.548 1.00 41.17 O
ATOM 13 C1' C A2478 42.796 -44.558 57.277 1.00 41.54 C
ATOM 14 N1 C A2478 42.822 -45.588 56.170 1.00 41.85 N
ATOM 15 C2 C A2478 42.116 -45.371 54.968 1.00 41.89 C
ATOM 16 O2 C A2478 41.572 -44.304 54.781 1.00 41.65 O
ATOM 17 N3 C A2478 41.968 -46.233 53.947 1.00 42.17 N
ATOM 18 C4 C A2478 42.549 -47.378 54.076 1.00 42.44 C
ATOM 19 N4 C A2478 42.375 -48.149 52.973 1.00 42.73 N
ATOM 20 C5 C A2478 43.275 -47.718 55.301 1.00 42.43 C
ATOM 21 C6 C A2478 43.361 -46.831 56.313 1.00 42.14 C
ATOM 22 P A A2479 45.219 -40.667 56.182 1.00 37.89 P
ATOM 23 OP1 A A2479 45.311 -39.189 56.068 1.00 37.60 O
ATOM 24 OP2 A A2479 45.364 -41.488 54.969 1.00 38.14 O
ATOM 25 O5' A A2479 46.216 -41.171 57.324 1.00 37.94 O
TER
ATOM 1 O3' U B2476 38.158 -47.217 50.382 1.00 40.40 O
ATOM 2 P U B2477 39.220 -46.040 50.555 1.00 41.03 P
ATOM 3 OP1 U B2477 38.957 -45.091 49.493 1.00 40.93 O
ATOM 4 OP2 U B2477 40.552 -46.654 50.640 1.00 41.15 O
ATOM 5 O5' U B2477 38.812 -45.412 51.939 1.00 40.74 O
ATOM 6 C5' U B2477 37.802 -44.443 52.001 1.00 40.53 C
ATOM 7 C4' U B2477 37.333 -44.242 53.409 1.00 40.36 C
ATOM 8 O4' U B2477 36.953 -45.504 53.979 1.00 40.60 O
ATOM 9 C3' U B2477 38.349 -43.686 54.400 1.00 40.13 C
ATOM 10 O3' U B2477 38.460 -42.281 54.331 1.00 39.82 O
ATOM 11 C2' U B2477 37.777 -44.141 55.735 1.00 40.13 C
ATOM 12 O2' U B2477 36.876 -43.168 56.267 1.00 39.89 O
ATOM 13 C1' U B2477 37.003 -45.414 55.366 1.00 40.46 C
ATOM 14 N1 U B2477 37.675 -46.561 55.865 1.00 40.68 N
ATOM 15 C2 U B2477 37.119 -47.109 56.989 1.00 40.74 C
ATOM 16 O2 U B2477 36.077 -46.708 57.482 1.00 40.63 O
ATOM 17 N3 U B2477 37.811 -48.172 57.494 1.00 40.95 N
ATOM 18 C4 U B2477 38.976 -48.671 56.993 1.00 41.10 C
ATOM 19 O4 U B2477 39.430 -49.618 57.574 1.00 41.30 O
ATOM 20 C5 U B2477 39.526 -48.029 55.841 1.00 41.02 C
ATOM 21 C6 U B2477 38.864 -46.978 55.319 1.00 40.81 C
ATOM 22 P C B2478 39.826 -41.569 53.942 1.00 41.14 P
ATOM 23 OP1 C B2478 39.627 -40.122 54.136 1.00 40.83 O
ATOM 24 OP2 C B2478 40.214 -42.055 52.607 1.00 41.36 O
ATOM 25 O5' C B2478 40.825 -42.108 55.010 1.00 41.16 O
TER
Atoms:
C2: (42.116,-45.371,54.968)
OP1: (39.627,-40.122,54.136)
OP2: (40.214,-42.055,52.607)
C4: (42.549,-47.378,54.076)
O5': (40.825,-42.108,55.010)
C3': (43.185,-42.334,56.558)
C1': (42.796,-44.558,57.277)
O4': (41.566,-43.877,57.256)
C5': (40.697,-41.795,56.375)
P: (39.826,-41.569,53.942)
O2: (41.572,-44.304,54.781)
C4': (41.798,-42.445,57.164)
C2': (43.906,-43.505,57.217)
O2': (44.215,-43.170,58.548)
N1: (42.822,-45.588,56.170)
N3: (41.968,-46.233,53.947)
N4: (42.375,-48.149,52.973)
C6: (43.361,-46.831,56.313)
C5: (43.275,-47.718,55.301)
O3': (43.783,-41.042,56.802)
OP1: (39.627,-40.122,54.136)
OP2: (40.214,-42.055,52.607)
C4: (42.549,-47.378,54.076)
O5': (40.825,-42.108,55.010)
C3': (43.185,-42.334,56.558)
C1': (42.796,-44.558,57.277)
O4': (41.566,-43.877,57.256)
C5': (40.697,-41.795,56.375)
P: (39.826,-41.569,53.942)
O2: (41.572,-44.304,54.781)
C4': (41.798,-42.445,57.164)
C2': (43.906,-43.505,57.217)
O2': (44.215,-43.170,58.548)
N1: (42.822,-45.588,56.170)
N3: (41.968,-46.233,53.947)
N4: (42.375,-48.149,52.973)
C6: (43.361,-46.831,56.313)
C5: (43.275,-47.718,55.301)
O3': (43.783,-41.042,56.802)
C4: (38.976,-48.671,56.993)
N3: (37.811,-48.172,57.494)
OP1: (38.957,-45.091,49.493)
OP2: (40.552,-46.654,50.640)
C2: (37.119,-47.109,56.989)
C1': (37.003,-45.414,55.366)
C3': (38.349,-43.686,54.400)
O5': (38.812,-45.412,51.939)
O4': (36.953,-45.504,53.979)
C5': (37.802,-44.443,52.001)
P: (39.220,-46.040,50.555)
C4': (37.333,-44.242,53.409)
C2': (37.777,-44.141,55.735)
O2': (36.876,-43.168,56.267)
N1: (37.675,-46.561,55.865)
O4: (39.430,-49.618,57.574)
O2: (36.077,-46.708,57.482)
C6: (38.864,-46.978,55.319)
C5: (39.526,-48.029,55.841)
O3': (38.460,-42.281,54.331)
N3: (37.811,-48.172,57.494)
OP1: (38.957,-45.091,49.493)
OP2: (40.552,-46.654,50.640)
C2: (37.119,-47.109,56.989)
C1': (37.003,-45.414,55.366)
C3': (38.349,-43.686,54.400)
O5': (38.812,-45.412,51.939)
O4': (36.953,-45.504,53.979)
C5': (37.802,-44.443,52.001)
P: (39.220,-46.040,50.555)
C4': (37.333,-44.242,53.409)
C2': (37.777,-44.141,55.735)
O2': (36.876,-43.168,56.267)
N1: (37.675,-46.561,55.865)
O4: (39.430,-49.618,57.574)
O2: (36.077,-46.708,57.482)
C6: (38.864,-46.978,55.319)
C5: (39.526,-48.029,55.841)
O3': (38.460,-42.281,54.331)
Image (generated by PyMOL):