ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3OHJ:A1021:A1089

Extra

PDB:
ATOM 1 O3' U A1020 126.143 -84.477 24.240 1.00 53.96 O
ATOM 2 P A A1021 125.801 -84.525 25.800 1.00 36.37 P
ATOM 3 OP1 A A1021 126.060 -83.178 26.351 1.00 59.34 O
ATOM 4 OP2 A A1021 126.518 -85.680 26.367 1.00 79.93 O
ATOM 5 O5' A A1021 124.251 -84.814 25.795 1.00 51.95 O
ATOM 6 C5' A A1021 123.335 -83.898 26.370 1.00 49.07 C
ATOM 7 C4' A A1021 122.040 -84.572 26.764 1.00 41.71 C
ATOM 8 O4' A A1021 121.836 -85.757 25.957 1.00 42.77 O
ATOM 9 C3' A A1021 121.950 -85.023 28.211 1.00 38.68 C
ATOM 10 O3' A A1021 120.660 -84.710 28.713 1.00 39.73 O
ATOM 11 C2' A A1021 122.125 -86.537 28.124 1.00 36.87 C
ATOM 12 O2' A A1021 121.497 -87.249 29.155 1.00 50.96 O
ATOM 13 C1' A A1021 121.496 -86.844 26.784 1.00 36.69 C
ATOM 14 N9 A A1021 121.963 -88.096 26.154 1.00 51.18 N
ATOM 15 C8 A A1021 123.091 -88.347 25.400 1.00 56.71 C
ATOM 16 N7 A A1021 123.207 -89.587 24.964 1.00 52.40 N
ATOM 17 C5 A A1021 122.077 -90.214 25.455 1.00 51.94 C
ATOM 18 C6 A A1021 121.597 -91.532 25.350 1.00 51.67 C
ATOM 19 N6 A A1021 122.194 -92.522 24.698 1.00 48.92 N
ATOM 20 N1 A A1021 120.438 -91.820 25.959 1.00 53.72 N
ATOM 21 C2 A A1021 119.809 -90.845 26.614 1.00 56.74 C
ATOM 22 N3 A A1021 120.151 -89.571 26.782 1.00 55.71 N
ATOM 23 C4 A A1021 121.311 -89.309 26.176 1.00 54.75 C
ATOM 24 P A A1022 120.394 -83.273 29.377 1.00 48.37 P
ATOM 25 OP1 A A1022 121.684 -82.818 29.936 1.00 53.20 O
ATOM 26 OP2 A A1022 119.229 -83.421 30.286 1.00 35.07 O
ATOM 27 O5' A A1022 120.013 -82.352 28.129 1.00 64.37 O
TER

ATOM 1 O3' C B1088 114.486 -96.732 21.785 1.00 50.93 O
ATOM 2 P U B1089 114.880 -96.737 23.341 1.00 42.50 P
ATOM 3 OP1 U B1089 115.266 -98.129 23.692 1.00 41.18 O
ATOM 4 OP2 U B1089 113.760 -96.119 24.066 1.00 45.21 O
ATOM 5 O5' U B1089 116.154 -95.788 23.386 1.00 35.55 O
ATOM 6 C5' U B1089 117.055 -95.731 22.294 1.00 42.84 C
ATOM 7 C4' U B1089 118.314 -94.986 22.652 1.00 45.78 C
ATOM 8 O4' U B1089 118.073 -93.555 22.574 1.00 46.65 O
ATOM 9 C3' U B1089 118.838 -95.242 24.061 1.00 50.77 C
ATOM 10 O3' U B1089 120.263 -95.168 24.050 1.00 65.24 O
ATOM 11 C2' U B1089 118.281 -94.056 24.823 1.00 42.73 C
ATOM 12 O2' U B1089 118.963 -93.744 26.012 1.00 47.23 O
ATOM 13 C1' U B1089 118.447 -92.967 23.795 1.00 46.57 C
ATOM 14 N1 U B1089 117.629 -91.778 24.057 1.00 43.05 N
ATOM 15 C2 U B1089 118.137 -90.563 23.683 1.00 40.55 C
ATOM 16 O2 U B1089 119.163 -90.432 23.089 1.00 44.95 O
ATOM 17 N3 U B1089 117.399 -89.479 23.998 1.00 44.17 N
ATOM 18 C4 U B1089 116.200 -89.494 24.671 1.00 51.30 C
ATOM 19 O4 U B1089 115.624 -88.424 24.887 1.00 58.10 O
ATOM 20 C5 U B1089 115.736 -90.793 25.065 1.00 42.06 C
ATOM 21 C6 U B1089 116.460 -91.870 24.761 1.00 42.29 C
ATOM 22 P U B1090 121.120 -95.977 25.126 1.00 43.02 P
ATOM 23 OP1 U B1090 120.642 -97.381 25.108 1.00 68.80 O
ATOM 24 OP2 U B1090 121.049 -95.212 26.386 1.00 84.23 O
ATOM 25 O5' U B1090 122.594 -95.902 24.550 1.00 65.02 O
TER

Atoms:
OP1: (126.060,-83.178,26.351)
OP2: (126.518,-85.680,26.367)
C3': (121.950,-85.023,28.211)
C1': (121.496,-86.844,26.784)
C5': (123.335,-83.898,26.370)
O4': (121.836,-85.757,25.957)
C8: (123.091,-88.347,25.400)
O2': (121.497,-87.249,29.155)
C6: (121.597,-91.532,25.350)
C5: (122.077,-90.214,25.455)
C4: (121.311,-89.309,26.176)
P: (125.801,-84.525,25.800)
C4': (122.040,-84.572,26.764)
C2': (122.125,-86.537,28.124)
C2: (119.809,-90.845,26.614)
N1: (120.438,-91.820,25.959)
N3: (120.151,-89.571,26.782)
N6: (122.194,-92.522,24.698)
N7: (123.207,-89.587,24.964)
N9: (121.963,-88.096,26.154)
O5': (124.251,-84.814,25.795)
O3': (120.660,-84.710,28.713)
C4: (116.200,-89.494,24.671)
N3: (117.399,-89.479,23.998)
OP1: (115.266,-98.129,23.692)
OP2: (113.760,-96.119,24.066)
C2: (118.137,-90.563,23.683)
C1': (118.447,-92.967,23.795)
C3': (118.838,-95.242,24.061)
O5': (116.154,-95.788,23.386)
O4': (118.073,-93.555,22.574)
C5': (117.055,-95.731,22.294)
P: (114.880,-96.737,23.341)
C4': (118.314,-94.986,22.652)
C2': (118.281,-94.056,24.823)
O2': (118.963,-93.744,26.012)
N1: (117.629,-91.778,24.057)
O4: (115.624,-88.424,24.887)
O2: (119.163,-90.432,23.089)
C6: (116.460,-91.870,24.761)
C5: (115.736,-90.793,25.065)
O3': (120.263,-95.168,24.050)
Image (generated by PyMOL):
PyMOL image
show in jmol