Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:119:120
Extra
PDB:
ATOM 1 O3' G A 18 47.881 -10.499 127.851 1.00 47.35 O
ATOM 2 P G A 19 47.668 -10.622 126.264 1.00 50.44 P
ATOM 3 OP1 G A 19 46.291 -10.210 125.974 1.00 50.24 O
ATOM 4 OP2 G A 19 48.102 -11.968 125.857 1.00 50.31 O
ATOM 5 O5' G A 19 48.673 -9.554 125.688 1.00 50.30 O
ATOM 6 C5' G A 19 48.318 -8.191 125.582 1.00 50.26 C
ATOM 7 C4' G A 19 49.549 -7.323 125.490 1.00 50.33 C
ATOM 8 O4' G A 19 50.402 -7.558 126.645 1.00 50.84 O
ATOM 9 C3' G A 19 50.487 -7.613 124.331 1.00 49.96 C
ATOM 10 O3' G A 19 50.029 -7.149 123.074 1.00 49.46 O
ATOM 11 C2' G A 19 51.756 -6.948 124.810 1.00 50.26 C
ATOM 12 O2' G A 19 51.600 -5.549 124.785 1.00 50.28 O
ATOM 13 C1' G A 19 51.756 -7.403 126.262 1.00 50.81 C
ATOM 14 N9 G A 19 52.461 -8.693 126.405 1.00 50.90 N
ATOM 15 C8 G A 19 51.971 -9.960 126.575 1.00 50.91 C
ATOM 16 N7 G A 19 52.917 -10.879 126.603 1.00 51.00 N
ATOM 17 C5 G A 19 54.095 -10.173 126.458 1.00 51.06 C
ATOM 18 C6 G A 19 55.430 -10.594 126.379 1.00 51.16 C
ATOM 19 O6 G A 19 55.885 -11.707 126.457 1.00 51.23 O
ATOM 20 N1 G A 19 56.321 -9.587 126.195 1.00 51.19 N
ATOM 21 C2 G A 19 55.933 -8.311 126.069 1.00 51.11 C
ATOM 22 N2 G A 19 56.882 -7.424 125.891 1.00 51.16 N
ATOM 23 N3 G A 19 54.705 -7.888 126.132 1.00 51.02 N
ATOM 24 C4 G A 19 53.822 -8.858 126.330 1.00 50.99 C
ATOM 25 P A A 20 50.483 -7.900 121.731 1.00 44.45 P
ATOM 26 OP1 A A 20 49.755 -7.265 120.607 1.00 44.01 O
ATOM 27 OP2 A A 20 50.297 -9.310 121.985 1.00 44.50 O
ATOM 28 O5' A A 20 52.038 -7.597 121.597 1.00 44.53 O
TER
ATOM 1 O3' G B 19 50.029 -7.149 123.074 1.00 49.46 O
ATOM 2 P A B 20 50.483 -7.900 121.731 1.00 44.45 P
ATOM 3 OP1 A B 20 49.755 -7.265 120.607 1.00 44.01 O
ATOM 4 OP2 A B 20 50.297 -9.310 121.985 1.00 44.50 O
ATOM 5 O5' A B 20 52.038 -7.597 121.597 1.00 44.53 O
ATOM 6 C5' A B 20 52.551 -6.276 121.538 1.00 44.59 C
ATOM 7 C4' A B 20 54.064 -6.279 121.596 1.00 44.75 C
ATOM 8 O4' A B 20 54.487 -6.902 122.831 1.00 45.22 O
ATOM 9 C3' A B 20 54.777 -7.110 120.532 1.00 44.41 C
ATOM 10 O3' A B 20 54.902 -6.471 119.280 1.00 43.99 O
ATOM 11 C2' A B 20 56.095 -7.411 121.171 1.00 44.76 C
ATOM 12 O2' A B 20 56.917 -6.271 121.102 1.00 44.85 O
ATOM 13 C1' A B 20 55.681 -7.629 122.624 1.00 45.25 C
ATOM 14 N9 A B 20 55.412 -9.044 122.888 1.00 45.29 N
ATOM 15 C8 A B 20 54.160 -9.542 123.065 1.00 45.23 C
ATOM 16 N7 A B 20 54.144 -10.838 123.229 1.00 45.28 N
ATOM 17 C5 A B 20 55.474 -11.205 123.154 1.00 45.39 C
ATOM 18 C6 A B 20 56.074 -12.463 123.255 1.00 45.49 C
ATOM 19 N6 A B 20 55.290 -13.554 123.441 1.00 45.49 N
ATOM 20 N1 A B 20 57.448 -12.558 123.122 1.00 45.59 N
ATOM 21 C2 A B 20 58.132 -11.438 122.888 1.00 45.57 C
ATOM 22 N3 A B 20 57.650 -10.195 122.781 1.00 45.48 N
ATOM 23 C4 A B 20 56.289 -10.125 122.922 1.00 45.39 C
ATOM 24 P G B 21 54.500 -7.292 117.965 1.00 53.60 P
ATOM 25 OP1 G B 21 54.203 -6.304 116.907 1.00 53.24 O
ATOM 26 OP2 G B 21 53.458 -8.246 118.367 1.00 53.63 O
ATOM 27 O5' G B 21 55.818 -8.103 117.616 1.00 53.59 O
TER
ATOM 2 P G A 19 47.668 -10.622 126.264 1.00 50.44 P
ATOM 3 OP1 G A 19 46.291 -10.210 125.974 1.00 50.24 O
ATOM 4 OP2 G A 19 48.102 -11.968 125.857 1.00 50.31 O
ATOM 5 O5' G A 19 48.673 -9.554 125.688 1.00 50.30 O
ATOM 6 C5' G A 19 48.318 -8.191 125.582 1.00 50.26 C
ATOM 7 C4' G A 19 49.549 -7.323 125.490 1.00 50.33 C
ATOM 8 O4' G A 19 50.402 -7.558 126.645 1.00 50.84 O
ATOM 9 C3' G A 19 50.487 -7.613 124.331 1.00 49.96 C
ATOM 10 O3' G A 19 50.029 -7.149 123.074 1.00 49.46 O
ATOM 11 C2' G A 19 51.756 -6.948 124.810 1.00 50.26 C
ATOM 12 O2' G A 19 51.600 -5.549 124.785 1.00 50.28 O
ATOM 13 C1' G A 19 51.756 -7.403 126.262 1.00 50.81 C
ATOM 14 N9 G A 19 52.461 -8.693 126.405 1.00 50.90 N
ATOM 15 C8 G A 19 51.971 -9.960 126.575 1.00 50.91 C
ATOM 16 N7 G A 19 52.917 -10.879 126.603 1.00 51.00 N
ATOM 17 C5 G A 19 54.095 -10.173 126.458 1.00 51.06 C
ATOM 18 C6 G A 19 55.430 -10.594 126.379 1.00 51.16 C
ATOM 19 O6 G A 19 55.885 -11.707 126.457 1.00 51.23 O
ATOM 20 N1 G A 19 56.321 -9.587 126.195 1.00 51.19 N
ATOM 21 C2 G A 19 55.933 -8.311 126.069 1.00 51.11 C
ATOM 22 N2 G A 19 56.882 -7.424 125.891 1.00 51.16 N
ATOM 23 N3 G A 19 54.705 -7.888 126.132 1.00 51.02 N
ATOM 24 C4 G A 19 53.822 -8.858 126.330 1.00 50.99 C
ATOM 25 P A A 20 50.483 -7.900 121.731 1.00 44.45 P
ATOM 26 OP1 A A 20 49.755 -7.265 120.607 1.00 44.01 O
ATOM 27 OP2 A A 20 50.297 -9.310 121.985 1.00 44.50 O
ATOM 28 O5' A A 20 52.038 -7.597 121.597 1.00 44.53 O
TER
ATOM 1 O3' G B 19 50.029 -7.149 123.074 1.00 49.46 O
ATOM 2 P A B 20 50.483 -7.900 121.731 1.00 44.45 P
ATOM 3 OP1 A B 20 49.755 -7.265 120.607 1.00 44.01 O
ATOM 4 OP2 A B 20 50.297 -9.310 121.985 1.00 44.50 O
ATOM 5 O5' A B 20 52.038 -7.597 121.597 1.00 44.53 O
ATOM 6 C5' A B 20 52.551 -6.276 121.538 1.00 44.59 C
ATOM 7 C4' A B 20 54.064 -6.279 121.596 1.00 44.75 C
ATOM 8 O4' A B 20 54.487 -6.902 122.831 1.00 45.22 O
ATOM 9 C3' A B 20 54.777 -7.110 120.532 1.00 44.41 C
ATOM 10 O3' A B 20 54.902 -6.471 119.280 1.00 43.99 O
ATOM 11 C2' A B 20 56.095 -7.411 121.171 1.00 44.76 C
ATOM 12 O2' A B 20 56.917 -6.271 121.102 1.00 44.85 O
ATOM 13 C1' A B 20 55.681 -7.629 122.624 1.00 45.25 C
ATOM 14 N9 A B 20 55.412 -9.044 122.888 1.00 45.29 N
ATOM 15 C8 A B 20 54.160 -9.542 123.065 1.00 45.23 C
ATOM 16 N7 A B 20 54.144 -10.838 123.229 1.00 45.28 N
ATOM 17 C5 A B 20 55.474 -11.205 123.154 1.00 45.39 C
ATOM 18 C6 A B 20 56.074 -12.463 123.255 1.00 45.49 C
ATOM 19 N6 A B 20 55.290 -13.554 123.441 1.00 45.49 N
ATOM 20 N1 A B 20 57.448 -12.558 123.122 1.00 45.59 N
ATOM 21 C2 A B 20 58.132 -11.438 122.888 1.00 45.57 C
ATOM 22 N3 A B 20 57.650 -10.195 122.781 1.00 45.48 N
ATOM 23 C4 A B 20 56.289 -10.125 122.922 1.00 45.39 C
ATOM 24 P G B 21 54.500 -7.292 117.965 1.00 53.60 P
ATOM 25 OP1 G B 21 54.203 -6.304 116.907 1.00 53.24 O
ATOM 26 OP2 G B 21 53.458 -8.246 118.367 1.00 53.63 O
ATOM 27 O5' G B 21 55.818 -8.103 117.616 1.00 53.59 O
TER
Atoms:
OP1: (46.291,-10.210,125.974)
OP2: (48.102,-11.968,125.857)
C3': (50.487,-7.613,124.331)
C1': (51.756,-7.403,126.262)
C5': (48.318,-8.191,125.582)
O6: (55.885,-11.707,126.457)
O4': (50.402,-7.558,126.645)
C8: (51.971,-9.960,126.575)
C2: (55.933,-8.311,126.069)
C6: (55.430,-10.594,126.379)
C5: (54.095,-10.173,126.458)
C4: (53.822,-8.858,126.330)
P: (47.668,-10.622,126.264)
C4': (49.549,-7.323,125.490)
C2': (51.756,-6.948,124.810)
O2': (51.600,-5.549,124.785)
N1: (56.321,-9.587,126.195)
N2: (56.882,-7.424,125.891)
N3: (54.705,-7.888,126.132)
N7: (52.917,-10.879,126.603)
N9: (52.461,-8.693,126.405)
O5': (48.673,-9.554,125.688)
O3': (50.029,-7.149,123.074)
OP2: (48.102,-11.968,125.857)
C3': (50.487,-7.613,124.331)
C1': (51.756,-7.403,126.262)
C5': (48.318,-8.191,125.582)
O6: (55.885,-11.707,126.457)
O4': (50.402,-7.558,126.645)
C8: (51.971,-9.960,126.575)
C2: (55.933,-8.311,126.069)
C6: (55.430,-10.594,126.379)
C5: (54.095,-10.173,126.458)
C4: (53.822,-8.858,126.330)
P: (47.668,-10.622,126.264)
C4': (49.549,-7.323,125.490)
C2': (51.756,-6.948,124.810)
O2': (51.600,-5.549,124.785)
N1: (56.321,-9.587,126.195)
N2: (56.882,-7.424,125.891)
N3: (54.705,-7.888,126.132)
N7: (52.917,-10.879,126.603)
N9: (52.461,-8.693,126.405)
O5': (48.673,-9.554,125.688)
O3': (50.029,-7.149,123.074)
OP1: (49.755,-7.265,120.607)
OP2: (50.297,-9.310,121.985)
C3': (54.777,-7.110,120.532)
C1': (55.681,-7.629,122.624)
C5': (52.551,-6.276,121.538)
O4': (54.487,-6.902,122.831)
C8: (54.160,-9.542,123.065)
O2': (56.917,-6.271,121.102)
C6: (56.074,-12.463,123.255)
C5: (55.474,-11.205,123.154)
C4: (56.289,-10.125,122.922)
P: (50.483,-7.900,121.731)
C4': (54.064,-6.279,121.596)
C2': (56.095,-7.411,121.171)
C2: (58.132,-11.438,122.888)
N1: (57.448,-12.558,123.122)
N3: (57.650,-10.195,122.781)
N6: (55.290,-13.554,123.441)
N7: (54.144,-10.838,123.229)
N9: (55.412,-9.044,122.888)
O5': (52.038,-7.597,121.597)
O3': (54.902,-6.471,119.280)
OP2: (50.297,-9.310,121.985)
C3': (54.777,-7.110,120.532)
C1': (55.681,-7.629,122.624)
C5': (52.551,-6.276,121.538)
O4': (54.487,-6.902,122.831)
C8: (54.160,-9.542,123.065)
O2': (56.917,-6.271,121.102)
C6: (56.074,-12.463,123.255)
C5: (55.474,-11.205,123.154)
C4: (56.289,-10.125,122.922)
P: (50.483,-7.900,121.731)
C4': (54.064,-6.279,121.596)
C2': (56.095,-7.411,121.171)
C2: (58.132,-11.438,122.888)
N1: (57.448,-12.558,123.122)
N3: (57.650,-10.195,122.781)
N6: (55.290,-13.554,123.441)
N7: (54.144,-10.838,123.229)
N9: (55.412,-9.044,122.888)
O5': (52.038,-7.597,121.597)
O3': (54.902,-6.471,119.280)
Image (generated by PyMOL):