Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02620:02630
Extra
PDB:
ATOM 1 O3' C A2619 44.205 112.718 168.200 1.00 47.28 O
ATOM 2 P U A2620 43.948 111.218 168.713 1.00 49.12 P
ATOM 3 OP1 U A2620 43.928 111.245 170.203 1.00 51.90 O
ATOM 4 OP2 U A2620 44.902 110.319 168.013 1.00 48.24 O
ATOM 5 O5' U A2620 42.474 110.897 168.214 1.00 46.63 O
ATOM 6 C5' U A2620 41.356 111.628 168.737 1.00 46.68 C
ATOM 7 C4' U A2620 40.128 111.369 167.905 1.00 47.53 C
ATOM 8 O4' U A2620 40.309 111.931 166.575 1.00 49.04 O
ATOM 9 C3' U A2620 39.822 109.910 167.632 1.00 47.92 C
ATOM 10 O3' U A2620 39.181 109.258 168.713 1.00 47.76 O
ATOM 11 C2' U A2620 38.937 110.003 166.400 1.00 48.07 C
ATOM 12 O2' U A2620 37.615 110.379 166.715 1.00 48.46 O
ATOM 13 C1' U A2620 39.637 111.118 165.622 1.00 48.68 C
ATOM 14 N1 U A2620 40.626 110.571 164.679 1.00 49.29 N
ATOM 15 C2 U A2620 40.157 110.096 163.460 1.00 49.29 C
ATOM 16 O2 U A2620 38.985 110.150 163.130 1.00 49.68 O
ATOM 17 N3 U A2620 41.113 109.556 162.643 1.00 48.95 N
ATOM 18 C4 U A2620 42.461 109.446 162.899 1.00 50.40 C
ATOM 19 O4 U A2620 43.186 108.887 162.073 1.00 50.75 O
ATOM 20 C5 U A2620 42.877 109.980 164.167 1.00 49.16 C
ATOM 21 C6 U A2620 41.969 110.509 164.992 1.00 48.10 C
ATOM 22 P G A2621 39.280 107.656 168.841 1.00 50.38 P
ATOM 23 OP1 G A2621 38.232 107.220 169.804 1.00 49.99 O
ATOM 24 OP2 G A2621 40.698 107.273 169.073 1.00 46.67 O
ATOM 25 O5' G A2621 38.852 107.119 167.403 1.00 48.32 O
TER
ATOM 1 O3' C B2629 45.202 106.862 159.266 1.00 45.24 O
ATOM 2 P U B2630 45.425 105.517 158.418 1.00 46.88 P
ATOM 3 OP1 U B2630 44.521 104.483 158.988 1.00 45.42 O
ATOM 4 OP2 U B2630 46.880 105.230 158.308 1.00 45.09 O
ATOM 5 O5' U B2630 44.866 105.911 156.976 1.00 46.10 O
ATOM 6 C5' U B2630 44.569 104.909 155.978 1.00 43.85 C
ATOM 7 C4' U B2630 43.537 105.443 155.007 1.00 45.22 C
ATOM 8 O4' U B2630 42.334 105.765 155.750 1.00 45.54 O
ATOM 9 C3' U B2630 43.922 106.727 154.269 1.00 45.35 C
ATOM 10 O3' U B2630 43.218 106.862 153.023 1.00 46.07 O
ATOM 11 C2' U B2630 43.378 107.794 155.207 1.00 45.30 C
ATOM 12 O2' U B2630 43.154 109.026 154.563 1.00 44.55 O
ATOM 13 C1' U B2630 42.064 107.145 155.641 1.00 46.05 C
ATOM 14 N1 U B2630 41.501 107.596 156.923 1.00 48.28 N
ATOM 15 C2 U B2630 40.120 107.714 157.008 1.00 48.36 C
ATOM 16 O2 U B2630 39.370 107.475 156.076 1.00 47.56 O
ATOM 17 N3 U B2630 39.650 108.124 158.229 1.00 49.94 N
ATOM 18 C4 U B2630 40.395 108.426 159.348 1.00 51.32 C
ATOM 19 O4 U B2630 39.820 108.796 160.372 1.00 53.49 O
ATOM 20 C5 U B2630 41.812 108.283 159.184 1.00 50.93 C
ATOM 21 C6 U B2630 42.305 107.883 158.008 1.00 49.16 C
ATOM 22 P A B2631 43.100 105.614 152.007 1.00 47.56 P
ATOM 23 OP1 A B2631 44.281 104.724 152.164 1.00 45.10 O
ATOM 24 OP2 A B2631 42.772 106.171 150.672 1.00 48.06 O
ATOM 25 O5' A B2631 41.794 104.846 152.503 1.00 46.15 O
TER
ATOM 2 P U A2620 43.948 111.218 168.713 1.00 49.12 P
ATOM 3 OP1 U A2620 43.928 111.245 170.203 1.00 51.90 O
ATOM 4 OP2 U A2620 44.902 110.319 168.013 1.00 48.24 O
ATOM 5 O5' U A2620 42.474 110.897 168.214 1.00 46.63 O
ATOM 6 C5' U A2620 41.356 111.628 168.737 1.00 46.68 C
ATOM 7 C4' U A2620 40.128 111.369 167.905 1.00 47.53 C
ATOM 8 O4' U A2620 40.309 111.931 166.575 1.00 49.04 O
ATOM 9 C3' U A2620 39.822 109.910 167.632 1.00 47.92 C
ATOM 10 O3' U A2620 39.181 109.258 168.713 1.00 47.76 O
ATOM 11 C2' U A2620 38.937 110.003 166.400 1.00 48.07 C
ATOM 12 O2' U A2620 37.615 110.379 166.715 1.00 48.46 O
ATOM 13 C1' U A2620 39.637 111.118 165.622 1.00 48.68 C
ATOM 14 N1 U A2620 40.626 110.571 164.679 1.00 49.29 N
ATOM 15 C2 U A2620 40.157 110.096 163.460 1.00 49.29 C
ATOM 16 O2 U A2620 38.985 110.150 163.130 1.00 49.68 O
ATOM 17 N3 U A2620 41.113 109.556 162.643 1.00 48.95 N
ATOM 18 C4 U A2620 42.461 109.446 162.899 1.00 50.40 C
ATOM 19 O4 U A2620 43.186 108.887 162.073 1.00 50.75 O
ATOM 20 C5 U A2620 42.877 109.980 164.167 1.00 49.16 C
ATOM 21 C6 U A2620 41.969 110.509 164.992 1.00 48.10 C
ATOM 22 P G A2621 39.280 107.656 168.841 1.00 50.38 P
ATOM 23 OP1 G A2621 38.232 107.220 169.804 1.00 49.99 O
ATOM 24 OP2 G A2621 40.698 107.273 169.073 1.00 46.67 O
ATOM 25 O5' G A2621 38.852 107.119 167.403 1.00 48.32 O
TER
ATOM 1 O3' C B2629 45.202 106.862 159.266 1.00 45.24 O
ATOM 2 P U B2630 45.425 105.517 158.418 1.00 46.88 P
ATOM 3 OP1 U B2630 44.521 104.483 158.988 1.00 45.42 O
ATOM 4 OP2 U B2630 46.880 105.230 158.308 1.00 45.09 O
ATOM 5 O5' U B2630 44.866 105.911 156.976 1.00 46.10 O
ATOM 6 C5' U B2630 44.569 104.909 155.978 1.00 43.85 C
ATOM 7 C4' U B2630 43.537 105.443 155.007 1.00 45.22 C
ATOM 8 O4' U B2630 42.334 105.765 155.750 1.00 45.54 O
ATOM 9 C3' U B2630 43.922 106.727 154.269 1.00 45.35 C
ATOM 10 O3' U B2630 43.218 106.862 153.023 1.00 46.07 O
ATOM 11 C2' U B2630 43.378 107.794 155.207 1.00 45.30 C
ATOM 12 O2' U B2630 43.154 109.026 154.563 1.00 44.55 O
ATOM 13 C1' U B2630 42.064 107.145 155.641 1.00 46.05 C
ATOM 14 N1 U B2630 41.501 107.596 156.923 1.00 48.28 N
ATOM 15 C2 U B2630 40.120 107.714 157.008 1.00 48.36 C
ATOM 16 O2 U B2630 39.370 107.475 156.076 1.00 47.56 O
ATOM 17 N3 U B2630 39.650 108.124 158.229 1.00 49.94 N
ATOM 18 C4 U B2630 40.395 108.426 159.348 1.00 51.32 C
ATOM 19 O4 U B2630 39.820 108.796 160.372 1.00 53.49 O
ATOM 20 C5 U B2630 41.812 108.283 159.184 1.00 50.93 C
ATOM 21 C6 U B2630 42.305 107.883 158.008 1.00 49.16 C
ATOM 22 P A B2631 43.100 105.614 152.007 1.00 47.56 P
ATOM 23 OP1 A B2631 44.281 104.724 152.164 1.00 45.10 O
ATOM 24 OP2 A B2631 42.772 106.171 150.672 1.00 48.06 O
ATOM 25 O5' A B2631 41.794 104.846 152.503 1.00 46.15 O
TER
Atoms:
C4: (42.461,109.446,162.899)
N3: (41.113,109.556,162.643)
OP1: (43.928,111.245,170.203)
OP2: (44.902,110.319,168.013)
C2: (40.157,110.096,163.460)
C1': (39.637,111.118,165.622)
C3': (39.822,109.910,167.632)
O5': (42.474,110.897,168.214)
O4': (40.309,111.931,166.575)
C5': (41.356,111.628,168.737)
P: (43.948,111.218,168.713)
C4': (40.128,111.369,167.905)
C2': (38.937,110.003,166.400)
O2': (37.615,110.379,166.715)
N1: (40.626,110.571,164.679)
O4: (43.186,108.887,162.073)
O2: (38.985,110.150,163.130)
C6: (41.969,110.509,164.992)
C5: (42.877,109.980,164.167)
O3': (39.181,109.258,168.713)
N3: (41.113,109.556,162.643)
OP1: (43.928,111.245,170.203)
OP2: (44.902,110.319,168.013)
C2: (40.157,110.096,163.460)
C1': (39.637,111.118,165.622)
C3': (39.822,109.910,167.632)
O5': (42.474,110.897,168.214)
O4': (40.309,111.931,166.575)
C5': (41.356,111.628,168.737)
P: (43.948,111.218,168.713)
C4': (40.128,111.369,167.905)
C2': (38.937,110.003,166.400)
O2': (37.615,110.379,166.715)
N1: (40.626,110.571,164.679)
O4: (43.186,108.887,162.073)
O2: (38.985,110.150,163.130)
C6: (41.969,110.509,164.992)
C5: (42.877,109.980,164.167)
O3': (39.181,109.258,168.713)
C4: (40.395,108.426,159.348)
N3: (39.650,108.124,158.229)
OP1: (44.521,104.483,158.988)
OP2: (46.880,105.230,158.308)
C2: (40.120,107.714,157.008)
C1': (42.064,107.145,155.641)
C3': (43.922,106.727,154.269)
O5': (44.866,105.911,156.976)
O4': (42.334,105.765,155.750)
C5': (44.569,104.909,155.978)
P: (45.425,105.517,158.418)
C4': (43.537,105.443,155.007)
C2': (43.378,107.794,155.207)
O2': (43.154,109.026,154.563)
N1: (41.501,107.596,156.923)
O4: (39.820,108.796,160.372)
O2: (39.370,107.475,156.076)
C6: (42.305,107.883,158.008)
C5: (41.812,108.283,159.184)
O3': (43.218,106.862,153.023)
N3: (39.650,108.124,158.229)
OP1: (44.521,104.483,158.988)
OP2: (46.880,105.230,158.308)
C2: (40.120,107.714,157.008)
C1': (42.064,107.145,155.641)
C3': (43.922,106.727,154.269)
O5': (44.866,105.911,156.976)
O4': (42.334,105.765,155.750)
C5': (44.569,104.909,155.978)
P: (45.425,105.517,158.418)
C4': (43.537,105.443,155.007)
C2': (43.378,107.794,155.207)
O2': (43.154,109.026,154.563)
N1: (41.501,107.596,156.923)
O4: (39.820,108.796,160.372)
O2: (39.370,107.475,156.076)
C6: (42.305,107.883,158.008)
C5: (41.812,108.283,159.184)
O3': (43.218,106.862,153.023)
Image (generated by PyMOL):