Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A9:A27
Extra
PDB:
ATOM 1 O3' U A 8 26.753 -19.039 13.108 1.00 25.35 O
ATOM 2 P G A 9 25.537 -18.479 12.214 1.00 28.33 P
ATOM 3 OP1 G A 9 24.311 -19.211 12.615 1.00 27.98 O
ATOM 4 OP2 G A 9 25.945 -18.477 10.783 1.00 28.77 O
ATOM 5 O5' G A 9 25.403 -16.969 12.706 1.00 28.29 O
ATOM 6 C5' G A 9 25.157 -16.679 14.079 1.00 26.02 C
ATOM 7 C4' G A 9 24.215 -15.507 14.203 1.00 26.08 C
ATOM 8 O4' G A 9 24.908 -14.271 13.939 1.00 26.86 O
ATOM 9 C3' G A 9 23.065 -15.481 13.211 1.00 25.57 C
ATOM 10 O3' G A 9 22.001 -16.283 13.674 1.00 27.16 O
ATOM 11 C2' G A 9 22.627 -14.028 13.260 1.00 24.61 C
ATOM 12 O2' G A 9 21.733 -13.837 14.331 1.00 24.66 O
ATOM 13 C1' G A 9 23.956 -13.306 13.535 1.00 24.74 C
ATOM 14 N9 G A 9 24.490 -12.548 12.409 1.00 22.71 N
ATOM 15 C8 G A 9 24.674 -12.971 11.117 1.00 21.72 C
ATOM 16 N7 G A 9 25.090 -12.024 10.323 1.00 21.83 N
ATOM 17 C5 G A 9 25.203 -10.918 11.149 1.00 22.90 C
ATOM 18 C6 G A 9 25.572 -9.585 10.852 1.00 26.48 C
ATOM 19 O6 G A 9 25.831 -9.084 9.747 1.00 29.71 O
ATOM 20 N1 G A 9 25.585 -8.792 11.999 1.00 24.96 N
ATOM 21 C2 G A 9 25.235 -9.222 13.259 1.00 22.72 C
ATOM 22 N2 G A 9 25.288 -8.313 14.244 1.00 21.91 N
ATOM 23 N3 G A 9 24.854 -10.452 13.533 1.00 21.87 N
ATOM 24 C4 G A 9 24.864 -11.238 12.442 1.00 21.23 C
ATOM 25 P C A 10 20.988 -16.932 12.628 1.00 31.03 P
ATOM 26 OP1 C A 10 19.902 -17.559 13.433 1.00 32.05 O
ATOM 27 OP2 C A 10 21.777 -17.753 11.666 1.00 27.22 O
ATOM 28 O5' C A 10 20.374 -15.684 11.855 1.00 32.60 O
TER
ATOM 1 O3' U B 26 23.240 -4.658 18.100 1.00 22.85 O
ATOM 2 P G B 27 24.067 -3.566 18.946 1.00 24.14 P
ATOM 3 OP1 G B 27 24.442 -4.138 20.257 1.00 27.12 O
ATOM 4 OP2 G B 27 23.309 -2.290 18.902 1.00 27.03 O
ATOM 5 O5' G B 27 25.395 -3.371 18.087 1.00 24.46 O
ATOM 6 C5' G B 27 26.428 -2.493 18.526 1.00 24.52 C
ATOM 7 C4' G B 27 27.288 -2.041 17.358 1.00 25.16 C
ATOM 8 O4' G B 27 28.020 -3.144 16.777 1.00 24.43 O
ATOM 9 C3' G B 27 26.554 -1.449 16.168 1.00 25.99 C
ATOM 10 O3' G B 27 26.153 -0.116 16.435 1.00 30.93 O
ATOM 11 C2' G B 27 27.613 -1.525 15.075 1.00 24.18 C
ATOM 12 O2' G B 27 28.580 -0.500 15.154 1.00 22.34 O
ATOM 13 C1' G B 27 28.299 -2.843 15.422 1.00 23.39 C
ATOM 14 N9 G B 27 27.823 -3.936 14.595 1.00 23.30 N
ATOM 15 C8 G B 27 26.935 -4.917 14.941 1.00 23.05 C
ATOM 16 N7 G B 27 26.713 -5.765 13.975 1.00 24.72 N
ATOM 17 C5 G B 27 27.503 -5.310 12.929 1.00 25.54 C
ATOM 18 C6 G B 27 27.686 -5.826 11.619 1.00 26.91 C
ATOM 19 O6 G B 27 27.151 -6.816 11.096 1.00 28.22 O
ATOM 20 N1 G B 27 28.592 -5.059 10.893 1.00 25.67 N
ATOM 21 C2 G B 27 29.230 -3.937 11.362 1.00 25.83 C
ATOM 22 N2 G B 27 30.073 -3.331 10.510 1.00 27.49 N
ATOM 23 N3 G B 27 29.060 -3.443 12.575 1.00 23.78 N
ATOM 24 C4 G B 27 28.192 -4.178 13.299 1.00 24.54 C
ATOM 25 P C B 28 24.817 0.454 15.765 1.00 30.85 P
ATOM 26 OP1 C B 28 24.818 1.915 16.045 1.00 29.97 O
ATOM 27 OP2 C B 28 23.675 -0.382 16.216 1.00 32.87 O
ATOM 28 O5' C B 28 25.055 0.191 14.216 1.00 25.08 O
TER
ATOM 2 P G A 9 25.537 -18.479 12.214 1.00 28.33 P
ATOM 3 OP1 G A 9 24.311 -19.211 12.615 1.00 27.98 O
ATOM 4 OP2 G A 9 25.945 -18.477 10.783 1.00 28.77 O
ATOM 5 O5' G A 9 25.403 -16.969 12.706 1.00 28.29 O
ATOM 6 C5' G A 9 25.157 -16.679 14.079 1.00 26.02 C
ATOM 7 C4' G A 9 24.215 -15.507 14.203 1.00 26.08 C
ATOM 8 O4' G A 9 24.908 -14.271 13.939 1.00 26.86 O
ATOM 9 C3' G A 9 23.065 -15.481 13.211 1.00 25.57 C
ATOM 10 O3' G A 9 22.001 -16.283 13.674 1.00 27.16 O
ATOM 11 C2' G A 9 22.627 -14.028 13.260 1.00 24.61 C
ATOM 12 O2' G A 9 21.733 -13.837 14.331 1.00 24.66 O
ATOM 13 C1' G A 9 23.956 -13.306 13.535 1.00 24.74 C
ATOM 14 N9 G A 9 24.490 -12.548 12.409 1.00 22.71 N
ATOM 15 C8 G A 9 24.674 -12.971 11.117 1.00 21.72 C
ATOM 16 N7 G A 9 25.090 -12.024 10.323 1.00 21.83 N
ATOM 17 C5 G A 9 25.203 -10.918 11.149 1.00 22.90 C
ATOM 18 C6 G A 9 25.572 -9.585 10.852 1.00 26.48 C
ATOM 19 O6 G A 9 25.831 -9.084 9.747 1.00 29.71 O
ATOM 20 N1 G A 9 25.585 -8.792 11.999 1.00 24.96 N
ATOM 21 C2 G A 9 25.235 -9.222 13.259 1.00 22.72 C
ATOM 22 N2 G A 9 25.288 -8.313 14.244 1.00 21.91 N
ATOM 23 N3 G A 9 24.854 -10.452 13.533 1.00 21.87 N
ATOM 24 C4 G A 9 24.864 -11.238 12.442 1.00 21.23 C
ATOM 25 P C A 10 20.988 -16.932 12.628 1.00 31.03 P
ATOM 26 OP1 C A 10 19.902 -17.559 13.433 1.00 32.05 O
ATOM 27 OP2 C A 10 21.777 -17.753 11.666 1.00 27.22 O
ATOM 28 O5' C A 10 20.374 -15.684 11.855 1.00 32.60 O
TER
ATOM 1 O3' U B 26 23.240 -4.658 18.100 1.00 22.85 O
ATOM 2 P G B 27 24.067 -3.566 18.946 1.00 24.14 P
ATOM 3 OP1 G B 27 24.442 -4.138 20.257 1.00 27.12 O
ATOM 4 OP2 G B 27 23.309 -2.290 18.902 1.00 27.03 O
ATOM 5 O5' G B 27 25.395 -3.371 18.087 1.00 24.46 O
ATOM 6 C5' G B 27 26.428 -2.493 18.526 1.00 24.52 C
ATOM 7 C4' G B 27 27.288 -2.041 17.358 1.00 25.16 C
ATOM 8 O4' G B 27 28.020 -3.144 16.777 1.00 24.43 O
ATOM 9 C3' G B 27 26.554 -1.449 16.168 1.00 25.99 C
ATOM 10 O3' G B 27 26.153 -0.116 16.435 1.00 30.93 O
ATOM 11 C2' G B 27 27.613 -1.525 15.075 1.00 24.18 C
ATOM 12 O2' G B 27 28.580 -0.500 15.154 1.00 22.34 O
ATOM 13 C1' G B 27 28.299 -2.843 15.422 1.00 23.39 C
ATOM 14 N9 G B 27 27.823 -3.936 14.595 1.00 23.30 N
ATOM 15 C8 G B 27 26.935 -4.917 14.941 1.00 23.05 C
ATOM 16 N7 G B 27 26.713 -5.765 13.975 1.00 24.72 N
ATOM 17 C5 G B 27 27.503 -5.310 12.929 1.00 25.54 C
ATOM 18 C6 G B 27 27.686 -5.826 11.619 1.00 26.91 C
ATOM 19 O6 G B 27 27.151 -6.816 11.096 1.00 28.22 O
ATOM 20 N1 G B 27 28.592 -5.059 10.893 1.00 25.67 N
ATOM 21 C2 G B 27 29.230 -3.937 11.362 1.00 25.83 C
ATOM 22 N2 G B 27 30.073 -3.331 10.510 1.00 27.49 N
ATOM 23 N3 G B 27 29.060 -3.443 12.575 1.00 23.78 N
ATOM 24 C4 G B 27 28.192 -4.178 13.299 1.00 24.54 C
ATOM 25 P C B 28 24.817 0.454 15.765 1.00 30.85 P
ATOM 26 OP1 C B 28 24.818 1.915 16.045 1.00 29.97 O
ATOM 27 OP2 C B 28 23.675 -0.382 16.216 1.00 32.87 O
ATOM 28 O5' C B 28 25.055 0.191 14.216 1.00 25.08 O
TER
Atoms:
OP1: (24.311,-19.211,12.615)
OP2: (25.945,-18.477,10.783)
C3': (23.065,-15.481,13.211)
C1': (23.956,-13.306,13.535)
C5': (25.157,-16.679,14.079)
O6: (25.831,-9.084,9.747)
O4': (24.908,-14.271,13.939)
C8: (24.674,-12.971,11.117)
C2: (25.235,-9.222,13.259)
C6: (25.572,-9.585,10.852)
C5: (25.203,-10.918,11.149)
C4: (24.864,-11.238,12.442)
P: (25.537,-18.479,12.214)
C4': (24.215,-15.507,14.203)
C2': (22.627,-14.028,13.260)
O2': (21.733,-13.837,14.331)
N1: (25.585,-8.792,11.999)
N2: (25.288,-8.313,14.244)
N3: (24.854,-10.452,13.533)
N7: (25.090,-12.024,10.323)
N9: (24.490,-12.548,12.409)
O5': (25.403,-16.969,12.706)
O3': (22.001,-16.283,13.674)
OP2: (25.945,-18.477,10.783)
C3': (23.065,-15.481,13.211)
C1': (23.956,-13.306,13.535)
C5': (25.157,-16.679,14.079)
O6: (25.831,-9.084,9.747)
O4': (24.908,-14.271,13.939)
C8: (24.674,-12.971,11.117)
C2: (25.235,-9.222,13.259)
C6: (25.572,-9.585,10.852)
C5: (25.203,-10.918,11.149)
C4: (24.864,-11.238,12.442)
P: (25.537,-18.479,12.214)
C4': (24.215,-15.507,14.203)
C2': (22.627,-14.028,13.260)
O2': (21.733,-13.837,14.331)
N1: (25.585,-8.792,11.999)
N2: (25.288,-8.313,14.244)
N3: (24.854,-10.452,13.533)
N7: (25.090,-12.024,10.323)
N9: (24.490,-12.548,12.409)
O5': (25.403,-16.969,12.706)
O3': (22.001,-16.283,13.674)
OP1: (24.442,-4.138,20.257)
OP2: (23.309,-2.290,18.902)
C3': (26.554,-1.449,16.168)
C1': (28.299,-2.843,15.422)
C5': (26.428,-2.493,18.526)
O6: (27.151,-6.816,11.096)
O4': (28.020,-3.144,16.777)
C8: (26.935,-4.917,14.941)
C2: (29.230,-3.937,11.362)
C6: (27.686,-5.826,11.619)
C5: (27.503,-5.310,12.929)
C4: (28.192,-4.178,13.299)
P: (24.067,-3.566,18.946)
C4': (27.288,-2.041,17.358)
C2': (27.613,-1.525,15.075)
O2': (28.580,-0.500,15.154)
N1: (28.592,-5.059,10.893)
N2: (30.073,-3.331,10.510)
N3: (29.060,-3.443,12.575)
N7: (26.713,-5.765,13.975)
N9: (27.823,-3.936,14.595)
O5': (25.395,-3.371,18.087)
O3': (26.153,-0.116,16.435)
OP2: (23.309,-2.290,18.902)
C3': (26.554,-1.449,16.168)
C1': (28.299,-2.843,15.422)
C5': (26.428,-2.493,18.526)
O6: (27.151,-6.816,11.096)
O4': (28.020,-3.144,16.777)
C8: (26.935,-4.917,14.941)
C2: (29.230,-3.937,11.362)
C6: (27.686,-5.826,11.619)
C5: (27.503,-5.310,12.929)
C4: (28.192,-4.178,13.299)
P: (24.067,-3.566,18.946)
C4': (27.288,-2.041,17.358)
C2': (27.613,-1.525,15.075)
O2': (28.580,-0.500,15.154)
N1: (28.592,-5.059,10.893)
N2: (30.073,-3.331,10.510)
N3: (29.060,-3.443,12.575)
N7: (26.713,-5.765,13.975)
N9: (27.823,-3.936,14.595)
O5': (25.395,-3.371,18.087)
O3': (26.153,-0.116,16.435)
Image (generated by PyMOL):