Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:C9:C27
Extra
PDB:
ATOM 1 O3' U A 8 -30.503 -43.359 6.129 1.00 24.60 O
ATOM 2 P G A 9 -29.476 -42.569 5.173 1.00 27.76 P
ATOM 3 OP1 G A 9 -29.474 -43.180 3.816 1.00 28.75 O
ATOM 4 OP2 G A 9 -28.194 -42.449 5.915 1.00 32.24 O
ATOM 5 O5' G A 9 -30.115 -41.115 5.073 1.00 23.67 O
ATOM 6 C5' G A 9 -31.480 -40.961 4.744 1.00 20.65 C
ATOM 7 C4' G A 9 -31.660 -39.735 3.902 1.00 21.02 C
ATOM 8 O4' G A 9 -31.676 -38.553 4.727 1.00 23.79 O
ATOM 9 C3' G A 9 -30.546 -39.472 2.909 1.00 21.79 C
ATOM 10 O3' G A 9 -30.719 -40.269 1.750 1.00 22.65 O
ATOM 11 C2' G A 9 -30.719 -37.987 2.617 1.00 23.16 C
ATOM 12 O2' G A 9 -31.706 -37.754 1.637 1.00 23.74 O
ATOM 13 C1' G A 9 -31.192 -37.456 3.977 1.00 23.67 C
ATOM 14 N9 G A 9 -30.169 -36.773 4.761 1.00 25.61 N
ATOM 15 C8 G A 9 -28.921 -37.242 5.096 1.00 27.46 C
ATOM 16 N7 G A 9 -28.207 -36.368 5.754 1.00 29.11 N
ATOM 17 C5 G A 9 -29.042 -35.261 5.870 1.00 27.48 C
ATOM 18 C6 G A 9 -28.818 -33.997 6.471 1.00 27.47 C
ATOM 19 O6 G A 9 -27.792 -33.571 7.019 1.00 32.00 O
ATOM 20 N1 G A 9 -29.943 -33.188 6.386 1.00 24.07 N
ATOM 21 C2 G A 9 -31.122 -33.541 5.802 1.00 21.48 C
ATOM 22 N2 G A 9 -32.098 -32.635 5.858 1.00 21.99 N
ATOM 23 N3 G A 9 -31.336 -34.699 5.217 1.00 23.19 N
ATOM 24 C4 G A 9 -30.262 -35.506 5.287 1.00 24.56 C
ATOM 25 P C A 10 -29.461 -40.594 0.820 1.00 21.78 P
ATOM 26 OP1 C A 10 -29.966 -41.277 -0.390 1.00 28.17 O
ATOM 27 OP2 C A 10 -28.473 -41.285 1.687 1.00 20.40 O
ATOM 28 O5' C A 10 -28.960 -39.147 0.377 1.00 19.54 O
TER
ATOM 1 O3' U B 26 -36.577 -28.804 4.250 1.00 22.98 O
ATOM 2 P G B 27 -37.447 -27.802 5.169 1.00 22.54 P
ATOM 3 OP1 G B 27 -38.828 -28.338 5.315 1.00 21.47 O
ATOM 4 OP2 G B 27 -37.250 -26.419 4.630 1.00 18.97 O
ATOM 5 O5' G B 27 -36.712 -27.883 6.583 1.00 18.44 O
ATOM 6 C5' G B 27 -37.251 -27.227 7.719 1.00 16.48 C
ATOM 7 C4' G B 27 -36.151 -26.826 8.665 1.00 14.21 C
ATOM 8 O4' G B 27 -35.490 -27.999 9.191 1.00 14.37 O
ATOM 9 C3' G B 27 -35.011 -26.038 8.053 1.00 12.62 C
ATOM 10 O3' G B 27 -35.367 -24.679 7.882 1.00 11.90 O
ATOM 11 C2' G B 27 -33.906 -26.216 9.091 1.00 14.41 C
ATOM 12 O2' G B 27 -33.989 -25.313 10.171 1.00 14.37 O
ATOM 13 C1' G B 27 -34.179 -27.640 9.594 1.00 14.66 C
ATOM 14 N9 G B 27 -33.249 -28.628 9.066 1.00 17.59 N
ATOM 15 C8 G B 27 -33.510 -29.606 8.141 1.00 20.25 C
ATOM 16 N7 G B 27 -32.459 -30.323 7.847 1.00 21.01 N
ATOM 17 C5 G B 27 -31.453 -29.788 8.632 1.00 21.52 C
ATOM 18 C6 G B 27 -30.098 -30.149 8.743 1.00 22.20 C
ATOM 19 O6 G B 27 -29.495 -31.035 8.150 1.00 26.94 O
ATOM 20 N1 G B 27 -29.430 -29.353 9.656 1.00 20.78 N
ATOM 21 C2 G B 27 -29.999 -28.334 10.369 1.00 22.59 C
ATOM 22 N2 G B 27 -29.193 -27.685 11.208 1.00 24.10 N
ATOM 23 N3 G B 27 -31.265 -27.978 10.271 1.00 21.30 N
ATOM 24 C4 G B 27 -31.927 -28.744 9.393 1.00 19.79 C
ATOM 25 P C B 28 -34.765 -23.858 6.645 1.00 12.71 P
ATOM 26 OP1 C B 28 -35.075 -22.425 6.852 1.00 8.15 O
ATOM 27 OP2 C B 28 -35.200 -24.537 5.390 1.00 6.75 O
ATOM 28 O5' C B 28 -33.201 -24.006 6.866 1.00 8.99 O
TER
ATOM 2 P G A 9 -29.476 -42.569 5.173 1.00 27.76 P
ATOM 3 OP1 G A 9 -29.474 -43.180 3.816 1.00 28.75 O
ATOM 4 OP2 G A 9 -28.194 -42.449 5.915 1.00 32.24 O
ATOM 5 O5' G A 9 -30.115 -41.115 5.073 1.00 23.67 O
ATOM 6 C5' G A 9 -31.480 -40.961 4.744 1.00 20.65 C
ATOM 7 C4' G A 9 -31.660 -39.735 3.902 1.00 21.02 C
ATOM 8 O4' G A 9 -31.676 -38.553 4.727 1.00 23.79 O
ATOM 9 C3' G A 9 -30.546 -39.472 2.909 1.00 21.79 C
ATOM 10 O3' G A 9 -30.719 -40.269 1.750 1.00 22.65 O
ATOM 11 C2' G A 9 -30.719 -37.987 2.617 1.00 23.16 C
ATOM 12 O2' G A 9 -31.706 -37.754 1.637 1.00 23.74 O
ATOM 13 C1' G A 9 -31.192 -37.456 3.977 1.00 23.67 C
ATOM 14 N9 G A 9 -30.169 -36.773 4.761 1.00 25.61 N
ATOM 15 C8 G A 9 -28.921 -37.242 5.096 1.00 27.46 C
ATOM 16 N7 G A 9 -28.207 -36.368 5.754 1.00 29.11 N
ATOM 17 C5 G A 9 -29.042 -35.261 5.870 1.00 27.48 C
ATOM 18 C6 G A 9 -28.818 -33.997 6.471 1.00 27.47 C
ATOM 19 O6 G A 9 -27.792 -33.571 7.019 1.00 32.00 O
ATOM 20 N1 G A 9 -29.943 -33.188 6.386 1.00 24.07 N
ATOM 21 C2 G A 9 -31.122 -33.541 5.802 1.00 21.48 C
ATOM 22 N2 G A 9 -32.098 -32.635 5.858 1.00 21.99 N
ATOM 23 N3 G A 9 -31.336 -34.699 5.217 1.00 23.19 N
ATOM 24 C4 G A 9 -30.262 -35.506 5.287 1.00 24.56 C
ATOM 25 P C A 10 -29.461 -40.594 0.820 1.00 21.78 P
ATOM 26 OP1 C A 10 -29.966 -41.277 -0.390 1.00 28.17 O
ATOM 27 OP2 C A 10 -28.473 -41.285 1.687 1.00 20.40 O
ATOM 28 O5' C A 10 -28.960 -39.147 0.377 1.00 19.54 O
TER
ATOM 1 O3' U B 26 -36.577 -28.804 4.250 1.00 22.98 O
ATOM 2 P G B 27 -37.447 -27.802 5.169 1.00 22.54 P
ATOM 3 OP1 G B 27 -38.828 -28.338 5.315 1.00 21.47 O
ATOM 4 OP2 G B 27 -37.250 -26.419 4.630 1.00 18.97 O
ATOM 5 O5' G B 27 -36.712 -27.883 6.583 1.00 18.44 O
ATOM 6 C5' G B 27 -37.251 -27.227 7.719 1.00 16.48 C
ATOM 7 C4' G B 27 -36.151 -26.826 8.665 1.00 14.21 C
ATOM 8 O4' G B 27 -35.490 -27.999 9.191 1.00 14.37 O
ATOM 9 C3' G B 27 -35.011 -26.038 8.053 1.00 12.62 C
ATOM 10 O3' G B 27 -35.367 -24.679 7.882 1.00 11.90 O
ATOM 11 C2' G B 27 -33.906 -26.216 9.091 1.00 14.41 C
ATOM 12 O2' G B 27 -33.989 -25.313 10.171 1.00 14.37 O
ATOM 13 C1' G B 27 -34.179 -27.640 9.594 1.00 14.66 C
ATOM 14 N9 G B 27 -33.249 -28.628 9.066 1.00 17.59 N
ATOM 15 C8 G B 27 -33.510 -29.606 8.141 1.00 20.25 C
ATOM 16 N7 G B 27 -32.459 -30.323 7.847 1.00 21.01 N
ATOM 17 C5 G B 27 -31.453 -29.788 8.632 1.00 21.52 C
ATOM 18 C6 G B 27 -30.098 -30.149 8.743 1.00 22.20 C
ATOM 19 O6 G B 27 -29.495 -31.035 8.150 1.00 26.94 O
ATOM 20 N1 G B 27 -29.430 -29.353 9.656 1.00 20.78 N
ATOM 21 C2 G B 27 -29.999 -28.334 10.369 1.00 22.59 C
ATOM 22 N2 G B 27 -29.193 -27.685 11.208 1.00 24.10 N
ATOM 23 N3 G B 27 -31.265 -27.978 10.271 1.00 21.30 N
ATOM 24 C4 G B 27 -31.927 -28.744 9.393 1.00 19.79 C
ATOM 25 P C B 28 -34.765 -23.858 6.645 1.00 12.71 P
ATOM 26 OP1 C B 28 -35.075 -22.425 6.852 1.00 8.15 O
ATOM 27 OP2 C B 28 -35.200 -24.537 5.390 1.00 6.75 O
ATOM 28 O5' C B 28 -33.201 -24.006 6.866 1.00 8.99 O
TER
Atoms:
OP1: (-29.474,-43.180,3.816)
OP2: (-28.194,-42.449,5.915)
C3': (-30.546,-39.472,2.909)
C1': (-31.192,-37.456,3.977)
C5': (-31.480,-40.961,4.744)
O6: (-27.792,-33.571,7.019)
O4': (-31.676,-38.553,4.727)
C8: (-28.921,-37.242,5.096)
C2: (-31.122,-33.541,5.802)
C6: (-28.818,-33.997,6.471)
C5: (-29.042,-35.261,5.870)
C4: (-30.262,-35.506,5.287)
P: (-29.476,-42.569,5.173)
C4': (-31.660,-39.735,3.902)
C2': (-30.719,-37.987,2.617)
O2': (-31.706,-37.754,1.637)
N1: (-29.943,-33.188,6.386)
N2: (-32.098,-32.635,5.858)
N3: (-31.336,-34.699,5.217)
N7: (-28.207,-36.368,5.754)
N9: (-30.169,-36.773,4.761)
O5': (-30.115,-41.115,5.073)
O3': (-30.719,-40.269,1.750)
OP2: (-28.194,-42.449,5.915)
C3': (-30.546,-39.472,2.909)
C1': (-31.192,-37.456,3.977)
C5': (-31.480,-40.961,4.744)
O6: (-27.792,-33.571,7.019)
O4': (-31.676,-38.553,4.727)
C8: (-28.921,-37.242,5.096)
C2: (-31.122,-33.541,5.802)
C6: (-28.818,-33.997,6.471)
C5: (-29.042,-35.261,5.870)
C4: (-30.262,-35.506,5.287)
P: (-29.476,-42.569,5.173)
C4': (-31.660,-39.735,3.902)
C2': (-30.719,-37.987,2.617)
O2': (-31.706,-37.754,1.637)
N1: (-29.943,-33.188,6.386)
N2: (-32.098,-32.635,5.858)
N3: (-31.336,-34.699,5.217)
N7: (-28.207,-36.368,5.754)
N9: (-30.169,-36.773,4.761)
O5': (-30.115,-41.115,5.073)
O3': (-30.719,-40.269,1.750)
OP1: (-38.828,-28.338,5.315)
OP2: (-37.250,-26.419,4.630)
C3': (-35.011,-26.038,8.053)
C1': (-34.179,-27.640,9.594)
C5': (-37.251,-27.227,7.719)
O6: (-29.495,-31.035,8.150)
O4': (-35.490,-27.999,9.191)
C8: (-33.510,-29.606,8.141)
C2: (-29.999,-28.334,10.369)
C6: (-30.098,-30.149,8.743)
C5: (-31.453,-29.788,8.632)
C4: (-31.927,-28.744,9.393)
P: (-37.447,-27.802,5.169)
C4': (-36.151,-26.826,8.665)
C2': (-33.906,-26.216,9.091)
O2': (-33.989,-25.313,10.171)
N1: (-29.430,-29.353,9.656)
N2: (-29.193,-27.685,11.208)
N3: (-31.265,-27.978,10.271)
N7: (-32.459,-30.323,7.847)
N9: (-33.249,-28.628,9.066)
O5': (-36.712,-27.883,6.583)
O3': (-35.367,-24.679,7.882)
OP2: (-37.250,-26.419,4.630)
C3': (-35.011,-26.038,8.053)
C1': (-34.179,-27.640,9.594)
C5': (-37.251,-27.227,7.719)
O6: (-29.495,-31.035,8.150)
O4': (-35.490,-27.999,9.191)
C8: (-33.510,-29.606,8.141)
C2: (-29.999,-28.334,10.369)
C6: (-30.098,-30.149,8.743)
C5: (-31.453,-29.788,8.632)
C4: (-31.927,-28.744,9.393)
P: (-37.447,-27.802,5.169)
C4': (-36.151,-26.826,8.665)
C2': (-33.906,-26.216,9.091)
O2': (-33.989,-25.313,10.171)
N1: (-29.430,-29.353,9.656)
N2: (-29.193,-27.685,11.208)
N3: (-31.265,-27.978,10.271)
N7: (-32.459,-30.323,7.847)
N9: (-33.249,-28.628,9.066)
O5': (-36.712,-27.883,6.583)
O3': (-35.367,-24.679,7.882)
Image (generated by PyMOL):