Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E9:E27
Extra
PDB:
ATOM 1 O3' U A 8 -21.811 -7.572 18.701 1.00 21.75 O
ATOM 2 P G A 9 -20.523 -8.353 18.149 1.00 20.08 P
ATOM 3 OP1 G A 9 -19.406 -7.375 18.036 1.00 21.88 O
ATOM 4 OP2 G A 9 -20.926 -9.151 16.954 1.00 17.81 O
ATOM 5 O5' G A 9 -20.156 -9.345 19.340 1.00 17.03 O
ATOM 6 C5' G A 9 -21.010 -10.422 19.676 1.00 14.87 C
ATOM 7 C4' G A 9 -20.298 -11.384 20.586 1.00 15.10 C
ATOM 8 O4' G A 9 -21.051 -12.616 20.587 1.00 17.04 O
ATOM 9 C3' G A 9 -18.901 -11.772 20.131 1.00 15.37 C
ATOM 10 O3' G A 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 11 C2' G A 9 -18.751 -13.185 20.657 1.00 16.76 C
ATOM 12 O2' G A 9 -18.352 -13.203 22.014 1.00 16.22 O
ATOM 13 C1' G A 9 -20.175 -13.721 20.486 1.00 18.25 C
ATOM 14 N9 G A 9 -20.439 -14.382 19.204 1.00 20.00 N
ATOM 15 C8 G A 9 -20.165 -13.905 17.944 1.00 19.18 C
ATOM 16 N7 G A 9 -20.508 -14.735 16.997 1.00 20.49 N
ATOM 17 C5 G A 9 -21.045 -15.822 17.670 1.00 18.63 C
ATOM 18 C6 G A 9 -21.579 -17.036 17.174 1.00 19.00 C
ATOM 19 O6 G A 9 -21.677 -17.417 15.994 1.00 17.33 O
ATOM 20 N1 G A 9 -22.020 -17.851 18.210 1.00 19.14 N
ATOM 21 C2 G A 9 -21.948 -17.539 19.548 1.00 18.35 C
ATOM 22 N2 G A 9 -22.435 -18.440 20.414 1.00 20.97 N
ATOM 23 N3 G A 9 -21.441 -16.426 20.012 1.00 16.67 N
ATOM 24 C4 G A 9 -21.015 -15.618 19.030 1.00 17.39 C
ATOM 25 P C A 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 26 OP1 C A 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 27 OP2 C A 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 28 O5' C A 10 -15.990 -11.836 19.437 1.00 16.87 O
TER
ATOM 1 O3' U B 26 -22.669 -22.156 25.225 1.00 16.13 O
ATOM 2 P G B 27 -23.904 -23.082 25.655 1.00 17.22 P
ATOM 3 OP1 G B 27 -24.498 -22.444 26.854 1.00 17.57 O
ATOM 4 OP2 G B 27 -23.474 -24.505 25.728 1.00 17.64 O
ATOM 5 O5' G B 27 -24.897 -22.933 24.416 1.00 16.86 O
ATOM 6 C5' G B 27 -26.182 -23.545 24.438 1.00 15.32 C
ATOM 7 C4' G B 27 -26.555 -24.067 23.066 1.00 13.33 C
ATOM 8 O4' G B 27 -26.842 -22.995 22.141 1.00 14.51 O
ATOM 9 C3' G B 27 -25.499 -24.876 22.344 1.00 11.54 C
ATOM 10 O3' G B 27 -25.494 -26.200 22.820 1.00 10.04 O
ATOM 11 C2' G B 27 -26.014 -24.857 20.918 1.00 12.79 C
ATOM 12 O2' G B 27 -27.038 -25.810 20.773 1.00 13.28 O
ATOM 13 C1' G B 27 -26.615 -23.453 20.824 1.00 13.09 C
ATOM 14 N9 G B 27 -25.753 -22.489 20.165 1.00 16.35 N
ATOM 15 C8 G B 27 -24.950 -21.567 20.775 1.00 19.04 C
ATOM 16 N7 G B 27 -24.293 -20.822 19.928 1.00 21.96 N
ATOM 17 C5 G B 27 -24.684 -21.287 18.685 1.00 21.84 C
ATOM 18 C6 G B 27 -24.296 -20.873 17.390 1.00 23.72 C
ATOM 19 O6 G B 27 -23.484 -19.999 17.072 1.00 25.60 O
ATOM 20 N1 G B 27 -24.948 -21.601 16.406 1.00 24.48 N
ATOM 21 C2 G B 27 -25.840 -22.613 16.640 1.00 24.28 C
ATOM 22 N2 G B 27 -26.363 -23.191 15.562 1.00 24.47 N
ATOM 23 N3 G B 27 -26.197 -23.023 17.845 1.00 23.94 N
ATOM 24 C4 G B 27 -25.588 -22.317 18.814 1.00 20.65 C
ATOM 25 P C B 28 -24.202 -27.110 22.588 1.00 13.61 P
ATOM 26 OP1 C B 28 -24.560 -28.530 22.813 1.00 15.23 O
ATOM 27 OP2 C B 28 -23.133 -26.495 23.406 1.00 14.27 O
ATOM 28 O5' C B 28 -23.863 -26.926 21.036 1.00 13.23 O
TER
ATOM 2 P G A 9 -20.523 -8.353 18.149 1.00 20.08 P
ATOM 3 OP1 G A 9 -19.406 -7.375 18.036 1.00 21.88 O
ATOM 4 OP2 G A 9 -20.926 -9.151 16.954 1.00 17.81 O
ATOM 5 O5' G A 9 -20.156 -9.345 19.340 1.00 17.03 O
ATOM 6 C5' G A 9 -21.010 -10.422 19.676 1.00 14.87 C
ATOM 7 C4' G A 9 -20.298 -11.384 20.586 1.00 15.10 C
ATOM 8 O4' G A 9 -21.051 -12.616 20.587 1.00 17.04 O
ATOM 9 C3' G A 9 -18.901 -11.772 20.131 1.00 15.37 C
ATOM 10 O3' G A 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 11 C2' G A 9 -18.751 -13.185 20.657 1.00 16.76 C
ATOM 12 O2' G A 9 -18.352 -13.203 22.014 1.00 16.22 O
ATOM 13 C1' G A 9 -20.175 -13.721 20.486 1.00 18.25 C
ATOM 14 N9 G A 9 -20.439 -14.382 19.204 1.00 20.00 N
ATOM 15 C8 G A 9 -20.165 -13.905 17.944 1.00 19.18 C
ATOM 16 N7 G A 9 -20.508 -14.735 16.997 1.00 20.49 N
ATOM 17 C5 G A 9 -21.045 -15.822 17.670 1.00 18.63 C
ATOM 18 C6 G A 9 -21.579 -17.036 17.174 1.00 19.00 C
ATOM 19 O6 G A 9 -21.677 -17.417 15.994 1.00 17.33 O
ATOM 20 N1 G A 9 -22.020 -17.851 18.210 1.00 19.14 N
ATOM 21 C2 G A 9 -21.948 -17.539 19.548 1.00 18.35 C
ATOM 22 N2 G A 9 -22.435 -18.440 20.414 1.00 20.97 N
ATOM 23 N3 G A 9 -21.441 -16.426 20.012 1.00 16.67 N
ATOM 24 C4 G A 9 -21.015 -15.618 19.030 1.00 17.39 C
ATOM 25 P C A 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 26 OP1 C A 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 27 OP2 C A 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 28 O5' C A 10 -15.990 -11.836 19.437 1.00 16.87 O
TER
ATOM 1 O3' U B 26 -22.669 -22.156 25.225 1.00 16.13 O
ATOM 2 P G B 27 -23.904 -23.082 25.655 1.00 17.22 P
ATOM 3 OP1 G B 27 -24.498 -22.444 26.854 1.00 17.57 O
ATOM 4 OP2 G B 27 -23.474 -24.505 25.728 1.00 17.64 O
ATOM 5 O5' G B 27 -24.897 -22.933 24.416 1.00 16.86 O
ATOM 6 C5' G B 27 -26.182 -23.545 24.438 1.00 15.32 C
ATOM 7 C4' G B 27 -26.555 -24.067 23.066 1.00 13.33 C
ATOM 8 O4' G B 27 -26.842 -22.995 22.141 1.00 14.51 O
ATOM 9 C3' G B 27 -25.499 -24.876 22.344 1.00 11.54 C
ATOM 10 O3' G B 27 -25.494 -26.200 22.820 1.00 10.04 O
ATOM 11 C2' G B 27 -26.014 -24.857 20.918 1.00 12.79 C
ATOM 12 O2' G B 27 -27.038 -25.810 20.773 1.00 13.28 O
ATOM 13 C1' G B 27 -26.615 -23.453 20.824 1.00 13.09 C
ATOM 14 N9 G B 27 -25.753 -22.489 20.165 1.00 16.35 N
ATOM 15 C8 G B 27 -24.950 -21.567 20.775 1.00 19.04 C
ATOM 16 N7 G B 27 -24.293 -20.822 19.928 1.00 21.96 N
ATOM 17 C5 G B 27 -24.684 -21.287 18.685 1.00 21.84 C
ATOM 18 C6 G B 27 -24.296 -20.873 17.390 1.00 23.72 C
ATOM 19 O6 G B 27 -23.484 -19.999 17.072 1.00 25.60 O
ATOM 20 N1 G B 27 -24.948 -21.601 16.406 1.00 24.48 N
ATOM 21 C2 G B 27 -25.840 -22.613 16.640 1.00 24.28 C
ATOM 22 N2 G B 27 -26.363 -23.191 15.562 1.00 24.47 N
ATOM 23 N3 G B 27 -26.197 -23.023 17.845 1.00 23.94 N
ATOM 24 C4 G B 27 -25.588 -22.317 18.814 1.00 20.65 C
ATOM 25 P C B 28 -24.202 -27.110 22.588 1.00 13.61 P
ATOM 26 OP1 C B 28 -24.560 -28.530 22.813 1.00 15.23 O
ATOM 27 OP2 C B 28 -23.133 -26.495 23.406 1.00 14.27 O
ATOM 28 O5' C B 28 -23.863 -26.926 21.036 1.00 13.23 O
TER
Atoms:
OP1: (-19.406,-7.375,18.036)
OP2: (-20.926,-9.151,16.954)
C3': (-18.901,-11.772,20.131)
C1': (-20.175,-13.721,20.486)
C5': (-21.010,-10.422,19.676)
O6: (-21.677,-17.417,15.994)
O4': (-21.051,-12.616,20.587)
C8: (-20.165,-13.905,17.944)
C2: (-21.948,-17.539,19.548)
C6: (-21.579,-17.036,17.174)
C5: (-21.045,-15.822,17.670)
C4: (-21.015,-15.618,19.030)
P: (-20.523,-8.353,18.149)
C4': (-20.298,-11.384,20.586)
C2': (-18.751,-13.185,20.657)
O2': (-18.352,-13.203,22.014)
N1: (-22.020,-17.851,18.210)
N2: (-22.435,-18.440,20.414)
N3: (-21.441,-16.426,20.012)
N7: (-20.508,-14.735,16.997)
N9: (-20.439,-14.382,19.204)
O5': (-20.156,-9.345,19.340)
O3': (-17.952,-10.935,20.744)
OP2: (-20.926,-9.151,16.954)
C3': (-18.901,-11.772,20.131)
C1': (-20.175,-13.721,20.486)
C5': (-21.010,-10.422,19.676)
O6: (-21.677,-17.417,15.994)
O4': (-21.051,-12.616,20.587)
C8: (-20.165,-13.905,17.944)
C2: (-21.948,-17.539,19.548)
C6: (-21.579,-17.036,17.174)
C5: (-21.045,-15.822,17.670)
C4: (-21.015,-15.618,19.030)
P: (-20.523,-8.353,18.149)
C4': (-20.298,-11.384,20.586)
C2': (-18.751,-13.185,20.657)
O2': (-18.352,-13.203,22.014)
N1: (-22.020,-17.851,18.210)
N2: (-22.435,-18.440,20.414)
N3: (-21.441,-16.426,20.012)
N7: (-20.508,-14.735,16.997)
N9: (-20.439,-14.382,19.204)
O5': (-20.156,-9.345,19.340)
O3': (-17.952,-10.935,20.744)
OP1: (-24.498,-22.444,26.854)
OP2: (-23.474,-24.505,25.728)
C3': (-25.499,-24.876,22.344)
C1': (-26.615,-23.453,20.824)
C5': (-26.182,-23.545,24.438)
O6: (-23.484,-19.999,17.072)
O4': (-26.842,-22.995,22.141)
C8: (-24.950,-21.567,20.775)
C2: (-25.840,-22.613,16.640)
C6: (-24.296,-20.873,17.390)
C5: (-24.684,-21.287,18.685)
C4: (-25.588,-22.317,18.814)
P: (-23.904,-23.082,25.655)
C4': (-26.555,-24.067,23.066)
C2': (-26.014,-24.857,20.918)
O2': (-27.038,-25.810,20.773)
N1: (-24.948,-21.601,16.406)
N2: (-26.363,-23.191,15.562)
N3: (-26.197,-23.023,17.845)
N7: (-24.293,-20.822,19.928)
N9: (-25.753,-22.489,20.165)
O5': (-24.897,-22.933,24.416)
O3': (-25.494,-26.200,22.820)
OP2: (-23.474,-24.505,25.728)
C3': (-25.499,-24.876,22.344)
C1': (-26.615,-23.453,20.824)
C5': (-26.182,-23.545,24.438)
O6: (-23.484,-19.999,17.072)
O4': (-26.842,-22.995,22.141)
C8: (-24.950,-21.567,20.775)
C2: (-25.840,-22.613,16.640)
C6: (-24.296,-20.873,17.390)
C5: (-24.684,-21.287,18.685)
C4: (-25.588,-22.317,18.814)
P: (-23.904,-23.082,25.655)
C4': (-26.555,-24.067,23.066)
C2': (-26.014,-24.857,20.918)
O2': (-27.038,-25.810,20.773)
N1: (-24.948,-21.601,16.406)
N2: (-26.363,-23.191,15.562)
N3: (-26.197,-23.023,17.845)
N7: (-24.293,-20.822,19.928)
N9: (-25.753,-22.489,20.165)
O5': (-24.897,-22.933,24.416)
O3': (-25.494,-26.200,22.820)
Image (generated by PyMOL):