Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G9:G27
Extra
PDB:
ATOM 1 O3' U A 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 2 P G A 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 3 OP1 G A 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 4 OP2 G A 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 5 O5' G A 9 -3.391 -47.034 -1.266 1.00 21.35 O
ATOM 6 C5' G A 9 -2.040 -46.747 -1.622 1.00 20.06 C
ATOM 7 C4' G A 9 -1.546 -45.531 -0.873 1.00 19.77 C
ATOM 8 O4' G A 9 -2.065 -44.310 -1.447 1.00 19.98 O
ATOM 9 C3' G A 9 -1.973 -45.446 0.579 1.00 18.74 C
ATOM 10 O3' G A 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 11 C2' G A 9 -1.744 -43.973 0.896 1.00 19.36 C
ATOM 12 O2' G A 9 -0.387 -43.720 1.187 1.00 23.50 O
ATOM 13 C1' G A 9 -2.063 -43.303 -0.447 1.00 18.15 C
ATOM 14 N9 G A 9 -3.324 -42.575 -0.522 1.00 13.74 N
ATOM 15 C8 G A 9 -4.566 -43.050 -0.194 1.00 12.68 C
ATOM 16 N7 G A 9 -5.520 -42.185 -0.413 1.00 13.95 N
ATOM 17 C5 G A 9 -4.865 -41.067 -0.908 1.00 10.53 C
ATOM 18 C6 G A 9 -5.382 -39.816 -1.337 1.00 8.93 C
ATOM 19 O6 G A 9 -6.563 -39.445 -1.386 1.00 7.02 O
ATOM 20 N1 G A 9 -4.365 -38.961 -1.750 1.00 6.39 N
ATOM 21 C2 G A 9 -3.031 -39.272 -1.759 1.00 6.23 C
ATOM 22 N2 G A 9 -2.212 -38.311 -2.190 1.00 7.53 N
ATOM 23 N3 G A 9 -2.537 -40.439 -1.374 1.00 7.02 N
ATOM 24 C4 G A 9 -3.505 -41.283 -0.964 1.00 10.31 C
ATOM 25 P C A 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 26 OP1 C A 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 27 OP2 C A 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 28 O5' C A 10 -2.383 -45.802 3.459 1.00 28.21 O
TER
ATOM 1 O3' U B 26 2.264 -34.635 -2.193 1.00 15.68 O
ATOM 2 P G B 27 2.739 -33.446 -3.166 1.00 21.07 P
ATOM 3 OP1 G B 27 4.002 -33.851 -3.821 1.00 15.99 O
ATOM 4 OP2 G B 27 2.694 -32.166 -2.396 1.00 22.13 O
ATOM 5 O5' G B 27 1.562 -33.377 -4.241 1.00 15.00 O
ATOM 6 C5' G B 27 1.489 -32.299 -5.164 1.00 11.77 C
ATOM 7 C4' G B 27 0.050 -31.947 -5.467 1.00 10.04 C
ATOM 8 O4' G B 27 -0.693 -33.133 -5.836 1.00 10.43 O
ATOM 9 C3' G B 27 -0.773 -31.401 -4.319 1.00 11.13 C
ATOM 10 O3' G B 27 -0.463 -30.040 -4.061 1.00 15.05 O
ATOM 11 C2' G B 27 -2.188 -31.573 -4.856 1.00 10.69 C
ATOM 12 O2' G B 27 -2.498 -30.603 -5.824 1.00 12.67 O
ATOM 13 C1' G B 27 -2.075 -32.911 -5.588 1.00 8.65 C
ATOM 14 N9 G B 27 -2.592 -34.032 -4.815 1.00 6.35 N
ATOM 15 C8 G B 27 -1.855 -35.015 -4.208 1.00 4.68 C
ATOM 16 N7 G B 27 -2.591 -35.880 -3.562 1.00 5.26 N
ATOM 17 C5 G B 27 -3.893 -35.448 -3.762 1.00 4.77 C
ATOM 18 C6 G B 27 -5.123 -35.996 -3.304 1.00 5.59 C
ATOM 19 O6 G B 27 -5.305 -37.006 -2.618 1.00 5.66 O
ATOM 20 N1 G B 27 -6.210 -35.244 -3.731 1.00 4.44 N
ATOM 21 C2 G B 27 -6.128 -34.120 -4.512 1.00 6.87 C
ATOM 22 N2 G B 27 -7.302 -33.555 -4.841 1.00 8.76 N
ATOM 23 N3 G B 27 -4.982 -33.594 -4.948 1.00 4.87 N
ATOM 24 C4 G B 27 -3.914 -34.308 -4.537 1.00 5.14 C
ATOM 25 P C B 28 -0.516 -29.488 -2.550 1.00 18.91 P
ATOM 26 OP1 C B 28 -0.327 -28.021 -2.653 1.00 15.79 O
ATOM 27 OP2 C B 28 0.406 -30.295 -1.696 1.00 13.95 O
ATOM 28 O5' C B 28 -2.022 -29.769 -2.122 1.00 15.46 O
TER
ATOM 2 P G A 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 3 OP1 G A 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 4 OP2 G A 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 5 O5' G A 9 -3.391 -47.034 -1.266 1.00 21.35 O
ATOM 6 C5' G A 9 -2.040 -46.747 -1.622 1.00 20.06 C
ATOM 7 C4' G A 9 -1.546 -45.531 -0.873 1.00 19.77 C
ATOM 8 O4' G A 9 -2.065 -44.310 -1.447 1.00 19.98 O
ATOM 9 C3' G A 9 -1.973 -45.446 0.579 1.00 18.74 C
ATOM 10 O3' G A 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 11 C2' G A 9 -1.744 -43.973 0.896 1.00 19.36 C
ATOM 12 O2' G A 9 -0.387 -43.720 1.187 1.00 23.50 O
ATOM 13 C1' G A 9 -2.063 -43.303 -0.447 1.00 18.15 C
ATOM 14 N9 G A 9 -3.324 -42.575 -0.522 1.00 13.74 N
ATOM 15 C8 G A 9 -4.566 -43.050 -0.194 1.00 12.68 C
ATOM 16 N7 G A 9 -5.520 -42.185 -0.413 1.00 13.95 N
ATOM 17 C5 G A 9 -4.865 -41.067 -0.908 1.00 10.53 C
ATOM 18 C6 G A 9 -5.382 -39.816 -1.337 1.00 8.93 C
ATOM 19 O6 G A 9 -6.563 -39.445 -1.386 1.00 7.02 O
ATOM 20 N1 G A 9 -4.365 -38.961 -1.750 1.00 6.39 N
ATOM 21 C2 G A 9 -3.031 -39.272 -1.759 1.00 6.23 C
ATOM 22 N2 G A 9 -2.212 -38.311 -2.190 1.00 7.53 N
ATOM 23 N3 G A 9 -2.537 -40.439 -1.374 1.00 7.02 N
ATOM 24 C4 G A 9 -3.505 -41.283 -0.964 1.00 10.31 C
ATOM 25 P C A 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 26 OP1 C A 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 27 OP2 C A 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 28 O5' C A 10 -2.383 -45.802 3.459 1.00 28.21 O
TER
ATOM 1 O3' U B 26 2.264 -34.635 -2.193 1.00 15.68 O
ATOM 2 P G B 27 2.739 -33.446 -3.166 1.00 21.07 P
ATOM 3 OP1 G B 27 4.002 -33.851 -3.821 1.00 15.99 O
ATOM 4 OP2 G B 27 2.694 -32.166 -2.396 1.00 22.13 O
ATOM 5 O5' G B 27 1.562 -33.377 -4.241 1.00 15.00 O
ATOM 6 C5' G B 27 1.489 -32.299 -5.164 1.00 11.77 C
ATOM 7 C4' G B 27 0.050 -31.947 -5.467 1.00 10.04 C
ATOM 8 O4' G B 27 -0.693 -33.133 -5.836 1.00 10.43 O
ATOM 9 C3' G B 27 -0.773 -31.401 -4.319 1.00 11.13 C
ATOM 10 O3' G B 27 -0.463 -30.040 -4.061 1.00 15.05 O
ATOM 11 C2' G B 27 -2.188 -31.573 -4.856 1.00 10.69 C
ATOM 12 O2' G B 27 -2.498 -30.603 -5.824 1.00 12.67 O
ATOM 13 C1' G B 27 -2.075 -32.911 -5.588 1.00 8.65 C
ATOM 14 N9 G B 27 -2.592 -34.032 -4.815 1.00 6.35 N
ATOM 15 C8 G B 27 -1.855 -35.015 -4.208 1.00 4.68 C
ATOM 16 N7 G B 27 -2.591 -35.880 -3.562 1.00 5.26 N
ATOM 17 C5 G B 27 -3.893 -35.448 -3.762 1.00 4.77 C
ATOM 18 C6 G B 27 -5.123 -35.996 -3.304 1.00 5.59 C
ATOM 19 O6 G B 27 -5.305 -37.006 -2.618 1.00 5.66 O
ATOM 20 N1 G B 27 -6.210 -35.244 -3.731 1.00 4.44 N
ATOM 21 C2 G B 27 -6.128 -34.120 -4.512 1.00 6.87 C
ATOM 22 N2 G B 27 -7.302 -33.555 -4.841 1.00 8.76 N
ATOM 23 N3 G B 27 -4.982 -33.594 -4.948 1.00 4.87 N
ATOM 24 C4 G B 27 -3.914 -34.308 -4.537 1.00 5.14 C
ATOM 25 P C B 28 -0.516 -29.488 -2.550 1.00 18.91 P
ATOM 26 OP1 C B 28 -0.327 -28.021 -2.653 1.00 15.79 O
ATOM 27 OP2 C B 28 0.406 -30.295 -1.696 1.00 13.95 O
ATOM 28 O5' C B 28 -2.022 -29.769 -2.122 1.00 15.46 O
TER
Atoms:
OP1: (-3.195,-49.319,-0.328)
OP2: (-5.442,-48.498,-1.292)
C3': (-1.973,-45.446,0.579)
C1': (-2.063,-43.303,-0.447)
C5': (-2.040,-46.747,-1.622)
O6: (-6.563,-39.445,-1.386)
O4': (-2.065,-44.310,-1.447)
C8: (-4.566,-43.050,-0.194)
C2: (-3.031,-39.272,-1.759)
C6: (-5.382,-39.816,-1.337)
C5: (-4.865,-41.067,-0.908)
C4: (-3.505,-41.283,-0.964)
P: (-3.948,-48.523,-1.335)
C4': (-1.546,-45.531,-0.873)
C2': (-1.744,-43.973,0.896)
O2': (-0.387,-43.720,1.187)
N1: (-4.365,-38.961,-1.750)
N2: (-2.212,-38.311,-2.190)
N3: (-2.537,-40.439,-1.374)
N7: (-5.520,-42.185,-0.413)
N9: (-3.324,-42.575,-0.522)
O5': (-3.391,-47.034,-1.266)
O3': (-1.130,-46.273,1.352)
OP2: (-5.442,-48.498,-1.292)
C3': (-1.973,-45.446,0.579)
C1': (-2.063,-43.303,-0.447)
C5': (-2.040,-46.747,-1.622)
O6: (-6.563,-39.445,-1.386)
O4': (-2.065,-44.310,-1.447)
C8: (-4.566,-43.050,-0.194)
C2: (-3.031,-39.272,-1.759)
C6: (-5.382,-39.816,-1.337)
C5: (-4.865,-41.067,-0.908)
C4: (-3.505,-41.283,-0.964)
P: (-3.948,-48.523,-1.335)
C4': (-1.546,-45.531,-0.873)
C2': (-1.744,-43.973,0.896)
O2': (-0.387,-43.720,1.187)
N1: (-4.365,-38.961,-1.750)
N2: (-2.212,-38.311,-2.190)
N3: (-2.537,-40.439,-1.374)
N7: (-5.520,-42.185,-0.413)
N9: (-3.324,-42.575,-0.522)
O5': (-3.391,-47.034,-1.266)
O3': (-1.130,-46.273,1.352)
OP1: (4.002,-33.851,-3.821)
OP2: (2.694,-32.166,-2.396)
C3': (-0.773,-31.401,-4.319)
C1': (-2.075,-32.911,-5.588)
C5': (1.489,-32.299,-5.164)
O6: (-5.305,-37.006,-2.618)
O4': (-0.693,-33.133,-5.836)
C8: (-1.855,-35.015,-4.208)
C2: (-6.128,-34.120,-4.512)
C6: (-5.123,-35.996,-3.304)
C5: (-3.893,-35.448,-3.762)
C4: (-3.914,-34.308,-4.537)
P: (2.739,-33.446,-3.166)
C4': (0.050,-31.947,-5.467)
C2': (-2.188,-31.573,-4.856)
O2': (-2.498,-30.603,-5.824)
N1: (-6.210,-35.244,-3.731)
N2: (-7.302,-33.555,-4.841)
N3: (-4.982,-33.594,-4.948)
N7: (-2.591,-35.880,-3.562)
N9: (-2.592,-34.032,-4.815)
O5': (1.562,-33.377,-4.241)
O3': (-0.463,-30.040,-4.061)
OP2: (2.694,-32.166,-2.396)
C3': (-0.773,-31.401,-4.319)
C1': (-2.075,-32.911,-5.588)
C5': (1.489,-32.299,-5.164)
O6: (-5.305,-37.006,-2.618)
O4': (-0.693,-33.133,-5.836)
C8: (-1.855,-35.015,-4.208)
C2: (-6.128,-34.120,-4.512)
C6: (-5.123,-35.996,-3.304)
C5: (-3.893,-35.448,-3.762)
C4: (-3.914,-34.308,-4.537)
P: (2.739,-33.446,-3.166)
C4': (0.050,-31.947,-5.467)
C2': (-2.188,-31.573,-4.856)
O2': (-2.498,-30.603,-5.824)
N1: (-6.210,-35.244,-3.731)
N2: (-7.302,-33.555,-4.841)
N3: (-4.982,-33.594,-4.948)
N7: (-2.591,-35.880,-3.562)
N9: (-2.592,-34.032,-4.815)
O5': (1.562,-33.377,-4.241)
O3': (-0.463,-30.040,-4.061)
Image (generated by PyMOL):