Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DUQ:A5:B7
Extra
PDB:
ATOM 1 O3' G A 4 12.792 -7.791 -10.519 1.00 37.38 O
ATOM 2 P G A 5 11.960 -6.747 -9.636 1.00 30.19 P
ATOM 3 OP1 G A 5 12.573 -6.922 -8.299 1.00 38.53 O
ATOM 4 OP2 G A 5 10.489 -6.922 -9.794 1.00 44.07 O
ATOM 5 O5' G A 5 12.262 -5.324 -10.273 1.00 38.64 O
ATOM 6 C5' G A 5 13.539 -4.993 -10.812 1.00 27.34 C
ATOM 7 C4' G A 5 13.413 -3.774 -11.718 1.00 22.57 C
ATOM 8 O4' G A 5 12.959 -4.150 -13.040 1.00 29.72 O
ATOM 9 C3' G A 5 12.454 -2.668 -11.290 1.00 30.53 C
ATOM 10 O3' G A 5 13.013 -1.803 -10.297 1.00 38.11 O
ATOM 11 C2' G A 5 12.230 -1.932 -12.608 1.00 34.88 C
ATOM 12 O2' G A 5 13.297 -1.087 -12.968 1.00 36.62 O
ATOM 13 C1' G A 5 12.183 -3.095 -13.603 1.00 32.41 C
ATOM 14 N9 G A 5 10.822 -3.587 -13.781 1.00 36.88 N
ATOM 15 C8 G A 5 10.247 -4.649 -13.125 1.00 28.00 C
ATOM 16 N7 G A 5 9.012 -4.862 -13.488 1.00 32.64 N
ATOM 17 C5 G A 5 8.753 -3.887 -14.439 1.00 25.71 C
ATOM 18 C6 G A 5 7.573 -3.637 -15.202 1.00 32.10 C
ATOM 19 O6 G A 5 6.515 -4.270 -15.186 1.00 33.38 O
ATOM 20 N1 G A 5 7.724 -2.528 -16.048 1.00 25.02 N
ATOM 21 C2 G A 5 8.879 -1.772 -16.150 1.00 38.04 C
ATOM 22 N2 G A 5 8.857 -0.729 -17.022 1.00 23.58 N
ATOM 23 N3 G A 5 9.990 -2.018 -15.448 1.00 25.55 N
ATOM 24 C4 G A 5 9.855 -3.080 -14.626 1.00 31.86 C
ATOM 25 P C A 6 12.050 -1.117 -9.195 1.00 32.98 P
ATOM 26 OP1 C A 6 12.941 -0.604 -8.133 1.00 47.02 O
ATOM 27 OP2 C A 6 10.962 -2.084 -8.846 1.00 34.07 O
ATOM 28 O5' C A 6 11.383 0.120 -9.935 1.00 27.56 O
TER
ATOM 1 O3' G B 6 0.153 2.393 -21.779 1.00 20.70 O
ATOM 2 P G B 7 1.143 1.882 -22.944 1.00 28.79 P
ATOM 3 OP1 G B 7 0.774 2.462 -24.240 1.00 26.86 O
ATOM 4 OP2 G B 7 1.227 0.433 -22.778 1.00 25.10 O
ATOM 5 O5' G B 7 2.599 2.448 -22.555 1.00 33.14 O
ATOM 6 C5' G B 7 2.890 3.872 -22.437 1.00 31.09 C
ATOM 7 C4' G B 7 4.348 4.048 -21.981 1.00 14.85 C
ATOM 8 O4' G B 7 4.517 3.365 -20.726 1.00 24.39 O
ATOM 9 C3' G B 7 5.357 3.451 -22.987 1.00 33.77 C
ATOM 10 O3' G B 7 6.483 4.332 -23.119 1.00 33.97 O
ATOM 11 C2' G B 7 6.004 2.276 -22.238 1.00 21.02 C
ATOM 12 O2' G B 7 7.376 2.113 -22.433 1.00 32.10 O
ATOM 13 C1' G B 7 5.698 2.618 -20.786 1.00 24.04 C
ATOM 14 N9 G B 7 5.697 1.546 -19.807 1.00 23.87 N
ATOM 15 C8 G B 7 6.599 1.397 -18.803 1.00 23.72 C
ATOM 16 N7 G B 7 6.490 0.266 -18.174 1.00 24.03 N
ATOM 17 C5 G B 7 5.413 -0.351 -18.777 1.00 30.26 C
ATOM 18 C6 G B 7 4.850 -1.595 -18.515 1.00 28.81 C
ATOM 19 O6 G B 7 5.224 -2.419 -17.685 1.00 33.89 O
ATOM 20 N1 G B 7 3.751 -1.848 -19.337 1.00 23.47 N
ATOM 21 C2 G B 7 3.278 -0.968 -20.297 1.00 40.90 C
ATOM 22 N2 G B 7 2.212 -1.361 -21.006 1.00 31.04 N
ATOM 23 N3 G B 7 3.819 0.222 -20.546 1.00 23.30 N
ATOM 24 C4 G B 7 4.880 0.451 -19.759 1.00 36.05 C
ATOM 25 P U B 8 6.556 5.497 -24.205 1.00 36.07 P
ATOM 26 OP1 U B 8 7.496 6.453 -23.574 1.00 41.11 O
ATOM 27 OP2 U B 8 5.234 5.967 -24.641 1.00 42.46 O
ATOM 28 O5' U B 8 7.339 4.867 -25.430 1.00 28.90 O
TER
ATOM 2 P G A 5 11.960 -6.747 -9.636 1.00 30.19 P
ATOM 3 OP1 G A 5 12.573 -6.922 -8.299 1.00 38.53 O
ATOM 4 OP2 G A 5 10.489 -6.922 -9.794 1.00 44.07 O
ATOM 5 O5' G A 5 12.262 -5.324 -10.273 1.00 38.64 O
ATOM 6 C5' G A 5 13.539 -4.993 -10.812 1.00 27.34 C
ATOM 7 C4' G A 5 13.413 -3.774 -11.718 1.00 22.57 C
ATOM 8 O4' G A 5 12.959 -4.150 -13.040 1.00 29.72 O
ATOM 9 C3' G A 5 12.454 -2.668 -11.290 1.00 30.53 C
ATOM 10 O3' G A 5 13.013 -1.803 -10.297 1.00 38.11 O
ATOM 11 C2' G A 5 12.230 -1.932 -12.608 1.00 34.88 C
ATOM 12 O2' G A 5 13.297 -1.087 -12.968 1.00 36.62 O
ATOM 13 C1' G A 5 12.183 -3.095 -13.603 1.00 32.41 C
ATOM 14 N9 G A 5 10.822 -3.587 -13.781 1.00 36.88 N
ATOM 15 C8 G A 5 10.247 -4.649 -13.125 1.00 28.00 C
ATOM 16 N7 G A 5 9.012 -4.862 -13.488 1.00 32.64 N
ATOM 17 C5 G A 5 8.753 -3.887 -14.439 1.00 25.71 C
ATOM 18 C6 G A 5 7.573 -3.637 -15.202 1.00 32.10 C
ATOM 19 O6 G A 5 6.515 -4.270 -15.186 1.00 33.38 O
ATOM 20 N1 G A 5 7.724 -2.528 -16.048 1.00 25.02 N
ATOM 21 C2 G A 5 8.879 -1.772 -16.150 1.00 38.04 C
ATOM 22 N2 G A 5 8.857 -0.729 -17.022 1.00 23.58 N
ATOM 23 N3 G A 5 9.990 -2.018 -15.448 1.00 25.55 N
ATOM 24 C4 G A 5 9.855 -3.080 -14.626 1.00 31.86 C
ATOM 25 P C A 6 12.050 -1.117 -9.195 1.00 32.98 P
ATOM 26 OP1 C A 6 12.941 -0.604 -8.133 1.00 47.02 O
ATOM 27 OP2 C A 6 10.962 -2.084 -8.846 1.00 34.07 O
ATOM 28 O5' C A 6 11.383 0.120 -9.935 1.00 27.56 O
TER
ATOM 1 O3' G B 6 0.153 2.393 -21.779 1.00 20.70 O
ATOM 2 P G B 7 1.143 1.882 -22.944 1.00 28.79 P
ATOM 3 OP1 G B 7 0.774 2.462 -24.240 1.00 26.86 O
ATOM 4 OP2 G B 7 1.227 0.433 -22.778 1.00 25.10 O
ATOM 5 O5' G B 7 2.599 2.448 -22.555 1.00 33.14 O
ATOM 6 C5' G B 7 2.890 3.872 -22.437 1.00 31.09 C
ATOM 7 C4' G B 7 4.348 4.048 -21.981 1.00 14.85 C
ATOM 8 O4' G B 7 4.517 3.365 -20.726 1.00 24.39 O
ATOM 9 C3' G B 7 5.357 3.451 -22.987 1.00 33.77 C
ATOM 10 O3' G B 7 6.483 4.332 -23.119 1.00 33.97 O
ATOM 11 C2' G B 7 6.004 2.276 -22.238 1.00 21.02 C
ATOM 12 O2' G B 7 7.376 2.113 -22.433 1.00 32.10 O
ATOM 13 C1' G B 7 5.698 2.618 -20.786 1.00 24.04 C
ATOM 14 N9 G B 7 5.697 1.546 -19.807 1.00 23.87 N
ATOM 15 C8 G B 7 6.599 1.397 -18.803 1.00 23.72 C
ATOM 16 N7 G B 7 6.490 0.266 -18.174 1.00 24.03 N
ATOM 17 C5 G B 7 5.413 -0.351 -18.777 1.00 30.26 C
ATOM 18 C6 G B 7 4.850 -1.595 -18.515 1.00 28.81 C
ATOM 19 O6 G B 7 5.224 -2.419 -17.685 1.00 33.89 O
ATOM 20 N1 G B 7 3.751 -1.848 -19.337 1.00 23.47 N
ATOM 21 C2 G B 7 3.278 -0.968 -20.297 1.00 40.90 C
ATOM 22 N2 G B 7 2.212 -1.361 -21.006 1.00 31.04 N
ATOM 23 N3 G B 7 3.819 0.222 -20.546 1.00 23.30 N
ATOM 24 C4 G B 7 4.880 0.451 -19.759 1.00 36.05 C
ATOM 25 P U B 8 6.556 5.497 -24.205 1.00 36.07 P
ATOM 26 OP1 U B 8 7.496 6.453 -23.574 1.00 41.11 O
ATOM 27 OP2 U B 8 5.234 5.967 -24.641 1.00 42.46 O
ATOM 28 O5' U B 8 7.339 4.867 -25.430 1.00 28.90 O
TER
Atoms:
OP1: (12.573,-6.922,-8.299)
OP2: (10.489,-6.922,-9.794)
C3': (12.454,-2.668,-11.290)
C1': (12.183,-3.095,-13.603)
C5': (13.539,-4.993,-10.812)
O6: (6.515,-4.270,-15.186)
O4': (12.959,-4.150,-13.040)
C8: (10.247,-4.649,-13.125)
C2: (8.879,-1.772,-16.150)
C6: (7.573,-3.637,-15.202)
C5: (8.753,-3.887,-14.439)
C4: (9.855,-3.080,-14.626)
P: (11.960,-6.747,-9.636)
C4': (13.413,-3.774,-11.718)
C2': (12.230,-1.932,-12.608)
O2': (13.297,-1.087,-12.968)
N1: (7.724,-2.528,-16.048)
N2: (8.857,-0.729,-17.022)
N3: (9.990,-2.018,-15.448)
N7: (9.012,-4.862,-13.488)
N9: (10.822,-3.587,-13.781)
O5': (12.262,-5.324,-10.273)
O3': (13.013,-1.803,-10.297)
OP2: (10.489,-6.922,-9.794)
C3': (12.454,-2.668,-11.290)
C1': (12.183,-3.095,-13.603)
C5': (13.539,-4.993,-10.812)
O6: (6.515,-4.270,-15.186)
O4': (12.959,-4.150,-13.040)
C8: (10.247,-4.649,-13.125)
C2: (8.879,-1.772,-16.150)
C6: (7.573,-3.637,-15.202)
C5: (8.753,-3.887,-14.439)
C4: (9.855,-3.080,-14.626)
P: (11.960,-6.747,-9.636)
C4': (13.413,-3.774,-11.718)
C2': (12.230,-1.932,-12.608)
O2': (13.297,-1.087,-12.968)
N1: (7.724,-2.528,-16.048)
N2: (8.857,-0.729,-17.022)
N3: (9.990,-2.018,-15.448)
N7: (9.012,-4.862,-13.488)
N9: (10.822,-3.587,-13.781)
O5': (12.262,-5.324,-10.273)
O3': (13.013,-1.803,-10.297)
OP1: (0.774,2.462,-24.240)
OP2: (1.227,0.433,-22.778)
C3': (5.357,3.451,-22.987)
C1': (5.698,2.618,-20.786)
C5': (2.890,3.872,-22.437)
O6: (5.224,-2.419,-17.685)
O4': (4.517,3.365,-20.726)
C8: (6.599,1.397,-18.803)
C2: (3.278,-0.968,-20.297)
C6: (4.850,-1.595,-18.515)
C5: (5.413,-0.351,-18.777)
C4: (4.880,0.451,-19.759)
P: (1.143,1.882,-22.944)
C4': (4.348,4.048,-21.981)
C2': (6.004,2.276,-22.238)
O2': (7.376,2.113,-22.433)
N1: (3.751,-1.848,-19.337)
N2: (2.212,-1.361,-21.006)
N3: (3.819,0.222,-20.546)
N7: (6.490,0.266,-18.174)
N9: (5.697,1.546,-19.807)
O5': (2.599,2.448,-22.555)
O3': (6.483,4.332,-23.119)
OP2: (1.227,0.433,-22.778)
C3': (5.357,3.451,-22.987)
C1': (5.698,2.618,-20.786)
C5': (2.890,3.872,-22.437)
O6: (5.224,-2.419,-17.685)
O4': (4.517,3.365,-20.726)
C8: (6.599,1.397,-18.803)
C2: (3.278,-0.968,-20.297)
C6: (4.850,-1.595,-18.515)
C5: (5.413,-0.351,-18.777)
C4: (4.880,0.451,-19.759)
P: (1.143,1.882,-22.944)
C4': (4.348,4.048,-21.981)
C2': (6.004,2.276,-22.238)
O2': (7.376,2.113,-22.433)
N1: (3.751,-1.848,-19.337)
N2: (2.212,-1.361,-21.006)
N3: (3.819,0.222,-20.546)
N7: (6.490,0.266,-18.174)
N9: (5.697,1.546,-19.807)
O5': (2.599,2.448,-22.555)
O3': (6.483,4.332,-23.119)
Image (generated by PyMOL):