Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:A47:A65
Extra
PDB:
ATOM 1 O3' U A 46 -4.259 19.389 -5.500 1.00 25.32 O
ATOM 2 P G A 47 -3.010 20.206 -6.076 1.00 24.34 P
ATOM 3 OP1 G A 47 -2.908 21.457 -5.307 1.00 29.65 O
ATOM 4 OP2 G A 47 -3.122 20.235 -7.552 1.00 25.14 O
ATOM 5 O5' G A 47 -1.758 19.284 -5.690 1.00 29.08 O
ATOM 6 C5' G A 47 -1.295 19.240 -4.343 1.00 26.79 C
ATOM 7 C4' G A 47 -0.203 18.199 -4.177 1.00 24.25 C
ATOM 8 O4' G A 47 -0.757 16.901 -4.511 1.00 24.02 O
ATOM 9 C3' G A 47 1.011 18.349 -5.087 1.00 24.10 C
ATOM 10 O3' G A 47 2.015 19.158 -4.490 1.00 31.02 O
ATOM 11 C2' G A 47 1.513 16.915 -5.191 1.00 24.02 C
ATOM 12 O2' G A 47 2.341 16.541 -4.109 1.00 25.85 O
ATOM 13 C1' G A 47 0.217 16.114 -5.162 1.00 23.89 C
ATOM 14 N9 G A 47 -0.262 15.818 -6.502 1.00 24.82 N
ATOM 15 C8 G A 47 -1.051 16.615 -7.296 1.00 23.78 C
ATOM 16 N7 G A 47 -1.317 16.082 -8.454 1.00 23.67 N
ATOM 17 C5 G A 47 -0.659 14.861 -8.416 1.00 22.51 C
ATOM 18 C6 G A 47 -0.585 13.845 -9.387 1.00 21.04 C
ATOM 19 O6 G A 47 -1.111 13.842 -10.500 1.00 18.49 O
ATOM 20 N1 G A 47 0.179 12.762 -8.962 1.00 25.27 N
ATOM 21 C2 G A 47 0.802 12.678 -7.739 1.00 22.90 C
ATOM 22 N2 G A 47 1.501 11.559 -7.495 1.00 24.78 N
ATOM 23 N3 G A 47 0.738 13.626 -6.817 1.00 24.19 N
ATOM 24 C4 G A 47 -0.005 14.681 -7.225 1.00 24.12 C
ATOM 25 P A A 48 2.022 20.751 -4.642 1.00 28.42 P
ATOM 26 OP1 A A 48 3.383 21.207 -4.292 1.00 33.03 O
ATOM 27 OP2 A A 48 0.857 21.283 -3.907 1.00 29.13 O
ATOM 28 O5' A A 48 1.814 20.999 -6.208 1.00 24.55 O
TER
ATOM 1 O3' C B 64 5.885 8.489 -7.013 1.00 28.98 O
ATOM 2 P G B 65 4.858 7.534 -6.240 1.00 40.15 P
ATOM 3 OP1 G B 65 3.598 8.291 -6.050 1.00 34.92 O
ATOM 4 OP2 G B 65 5.551 6.984 -5.054 1.00 29.99 O
ATOM 5 O5' G B 65 4.573 6.360 -7.290 1.00 27.48 O
ATOM 6 C5' G B 65 3.993 5.139 -6.833 1.00 29.08 C
ATOM 7 C4' G B 65 3.083 4.491 -7.867 1.00 31.06 C
ATOM 8 O4' G B 65 2.010 5.404 -8.218 1.00 24.67 O
ATOM 9 C3' G B 65 3.716 4.107 -9.200 1.00 30.50 C
ATOM 10 O3' G B 65 2.966 3.054 -9.781 1.00 26.76 O
ATOM 11 C2' G B 65 3.513 5.387 -10.002 1.00 26.27 C
ATOM 12 O2' G B 65 3.561 5.171 -11.396 1.00 30.90 O
ATOM 13 C1' G B 65 2.084 5.701 -9.597 1.00 22.84 C
ATOM 14 N9 G B 65 1.695 7.097 -9.753 1.00 26.44 N
ATOM 15 C8 G B 65 1.948 8.119 -8.871 1.00 22.87 C
ATOM 16 N7 G B 65 1.469 9.267 -9.261 1.00 25.82 N
ATOM 17 C5 G B 65 0.858 8.975 -10.473 1.00 21.69 C
ATOM 18 C6 G B 65 0.170 9.828 -11.354 1.00 24.84 C
ATOM 19 O6 G B 65 -0.028 11.035 -11.204 1.00 22.52 O
ATOM 20 N1 G B 65 -0.306 9.155 -12.477 1.00 20.59 N
ATOM 21 C2 G B 65 -0.125 7.811 -12.713 1.00 24.54 C
ATOM 22 N2 G B 65 -0.647 7.333 -13.852 1.00 19.83 N
ATOM 23 N3 G B 65 0.522 6.993 -11.892 1.00 21.88 N
ATOM 24 C4 G B 65 0.984 7.646 -10.795 1.00 22.63 C
ATOM 25 P C B 66 3.311 1.508 -9.505 1.00 30.45 P
ATOM 26 OP1 C B 66 4.732 1.309 -9.868 1.00 31.45 O
ATOM 27 OP2 C B 66 2.243 0.714 -10.151 1.00 30.23 O
ATOM 28 O5' C B 66 3.188 1.331 -7.925 1.00 30.05 O
TER
ATOM 2 P G A 47 -3.010 20.206 -6.076 1.00 24.34 P
ATOM 3 OP1 G A 47 -2.908 21.457 -5.307 1.00 29.65 O
ATOM 4 OP2 G A 47 -3.122 20.235 -7.552 1.00 25.14 O
ATOM 5 O5' G A 47 -1.758 19.284 -5.690 1.00 29.08 O
ATOM 6 C5' G A 47 -1.295 19.240 -4.343 1.00 26.79 C
ATOM 7 C4' G A 47 -0.203 18.199 -4.177 1.00 24.25 C
ATOM 8 O4' G A 47 -0.757 16.901 -4.511 1.00 24.02 O
ATOM 9 C3' G A 47 1.011 18.349 -5.087 1.00 24.10 C
ATOM 10 O3' G A 47 2.015 19.158 -4.490 1.00 31.02 O
ATOM 11 C2' G A 47 1.513 16.915 -5.191 1.00 24.02 C
ATOM 12 O2' G A 47 2.341 16.541 -4.109 1.00 25.85 O
ATOM 13 C1' G A 47 0.217 16.114 -5.162 1.00 23.89 C
ATOM 14 N9 G A 47 -0.262 15.818 -6.502 1.00 24.82 N
ATOM 15 C8 G A 47 -1.051 16.615 -7.296 1.00 23.78 C
ATOM 16 N7 G A 47 -1.317 16.082 -8.454 1.00 23.67 N
ATOM 17 C5 G A 47 -0.659 14.861 -8.416 1.00 22.51 C
ATOM 18 C6 G A 47 -0.585 13.845 -9.387 1.00 21.04 C
ATOM 19 O6 G A 47 -1.111 13.842 -10.500 1.00 18.49 O
ATOM 20 N1 G A 47 0.179 12.762 -8.962 1.00 25.27 N
ATOM 21 C2 G A 47 0.802 12.678 -7.739 1.00 22.90 C
ATOM 22 N2 G A 47 1.501 11.559 -7.495 1.00 24.78 N
ATOM 23 N3 G A 47 0.738 13.626 -6.817 1.00 24.19 N
ATOM 24 C4 G A 47 -0.005 14.681 -7.225 1.00 24.12 C
ATOM 25 P A A 48 2.022 20.751 -4.642 1.00 28.42 P
ATOM 26 OP1 A A 48 3.383 21.207 -4.292 1.00 33.03 O
ATOM 27 OP2 A A 48 0.857 21.283 -3.907 1.00 29.13 O
ATOM 28 O5' A A 48 1.814 20.999 -6.208 1.00 24.55 O
TER
ATOM 1 O3' C B 64 5.885 8.489 -7.013 1.00 28.98 O
ATOM 2 P G B 65 4.858 7.534 -6.240 1.00 40.15 P
ATOM 3 OP1 G B 65 3.598 8.291 -6.050 1.00 34.92 O
ATOM 4 OP2 G B 65 5.551 6.984 -5.054 1.00 29.99 O
ATOM 5 O5' G B 65 4.573 6.360 -7.290 1.00 27.48 O
ATOM 6 C5' G B 65 3.993 5.139 -6.833 1.00 29.08 C
ATOM 7 C4' G B 65 3.083 4.491 -7.867 1.00 31.06 C
ATOM 8 O4' G B 65 2.010 5.404 -8.218 1.00 24.67 O
ATOM 9 C3' G B 65 3.716 4.107 -9.200 1.00 30.50 C
ATOM 10 O3' G B 65 2.966 3.054 -9.781 1.00 26.76 O
ATOM 11 C2' G B 65 3.513 5.387 -10.002 1.00 26.27 C
ATOM 12 O2' G B 65 3.561 5.171 -11.396 1.00 30.90 O
ATOM 13 C1' G B 65 2.084 5.701 -9.597 1.00 22.84 C
ATOM 14 N9 G B 65 1.695 7.097 -9.753 1.00 26.44 N
ATOM 15 C8 G B 65 1.948 8.119 -8.871 1.00 22.87 C
ATOM 16 N7 G B 65 1.469 9.267 -9.261 1.00 25.82 N
ATOM 17 C5 G B 65 0.858 8.975 -10.473 1.00 21.69 C
ATOM 18 C6 G B 65 0.170 9.828 -11.354 1.00 24.84 C
ATOM 19 O6 G B 65 -0.028 11.035 -11.204 1.00 22.52 O
ATOM 20 N1 G B 65 -0.306 9.155 -12.477 1.00 20.59 N
ATOM 21 C2 G B 65 -0.125 7.811 -12.713 1.00 24.54 C
ATOM 22 N2 G B 65 -0.647 7.333 -13.852 1.00 19.83 N
ATOM 23 N3 G B 65 0.522 6.993 -11.892 1.00 21.88 N
ATOM 24 C4 G B 65 0.984 7.646 -10.795 1.00 22.63 C
ATOM 25 P C B 66 3.311 1.508 -9.505 1.00 30.45 P
ATOM 26 OP1 C B 66 4.732 1.309 -9.868 1.00 31.45 O
ATOM 27 OP2 C B 66 2.243 0.714 -10.151 1.00 30.23 O
ATOM 28 O5' C B 66 3.188 1.331 -7.925 1.00 30.05 O
TER
Atoms:
OP1: (-2.908,21.457,-5.307)
OP2: (-3.122,20.235,-7.552)
C3': (1.011,18.349,-5.087)
C1': (0.217,16.114,-5.162)
C5': (-1.295,19.240,-4.343)
O6: (-1.111,13.842,-10.500)
O4': (-0.757,16.901,-4.511)
C8: (-1.051,16.615,-7.296)
C2: (0.802,12.678,-7.739)
C6: (-0.585,13.845,-9.387)
C5: (-0.659,14.861,-8.416)
C4: (-0.005,14.681,-7.225)
P: (-3.010,20.206,-6.076)
C4': (-0.203,18.199,-4.177)
C2': (1.513,16.915,-5.191)
O2': (2.341,16.541,-4.109)
N1: (0.179,12.762,-8.962)
N2: (1.501,11.559,-7.495)
N3: (0.738,13.626,-6.817)
N7: (-1.317,16.082,-8.454)
N9: (-0.262,15.818,-6.502)
O5': (-1.758,19.284,-5.690)
O3': (2.015,19.158,-4.490)
OP2: (-3.122,20.235,-7.552)
C3': (1.011,18.349,-5.087)
C1': (0.217,16.114,-5.162)
C5': (-1.295,19.240,-4.343)
O6: (-1.111,13.842,-10.500)
O4': (-0.757,16.901,-4.511)
C8: (-1.051,16.615,-7.296)
C2: (0.802,12.678,-7.739)
C6: (-0.585,13.845,-9.387)
C5: (-0.659,14.861,-8.416)
C4: (-0.005,14.681,-7.225)
P: (-3.010,20.206,-6.076)
C4': (-0.203,18.199,-4.177)
C2': (1.513,16.915,-5.191)
O2': (2.341,16.541,-4.109)
N1: (0.179,12.762,-8.962)
N2: (1.501,11.559,-7.495)
N3: (0.738,13.626,-6.817)
N7: (-1.317,16.082,-8.454)
N9: (-0.262,15.818,-6.502)
O5': (-1.758,19.284,-5.690)
O3': (2.015,19.158,-4.490)
OP1: (3.598,8.291,-6.050)
OP2: (5.551,6.984,-5.054)
C3': (3.716,4.107,-9.200)
C1': (2.084,5.701,-9.597)
C5': (3.993,5.139,-6.833)
O6: (-0.028,11.035,-11.204)
O4': (2.010,5.404,-8.218)
C8: (1.948,8.119,-8.871)
C2: (-0.125,7.811,-12.713)
C6: (0.170,9.828,-11.354)
C5: (0.858,8.975,-10.473)
C4: (0.984,7.646,-10.795)
P: (4.858,7.534,-6.240)
C4': (3.083,4.491,-7.867)
C2': (3.513,5.387,-10.002)
O2': (3.561,5.171,-11.396)
N1: (-0.306,9.155,-12.477)
N2: (-0.647,7.333,-13.852)
N3: (0.522,6.993,-11.892)
N7: (1.469,9.267,-9.261)
N9: (1.695,7.097,-9.753)
O5': (4.573,6.360,-7.290)
O3': (2.966,3.054,-9.781)
OP2: (5.551,6.984,-5.054)
C3': (3.716,4.107,-9.200)
C1': (2.084,5.701,-9.597)
C5': (3.993,5.139,-6.833)
O6: (-0.028,11.035,-11.204)
O4': (2.010,5.404,-8.218)
C8: (1.948,8.119,-8.871)
C2: (-0.125,7.811,-12.713)
C6: (0.170,9.828,-11.354)
C5: (0.858,8.975,-10.473)
C4: (0.984,7.646,-10.795)
P: (4.858,7.534,-6.240)
C4': (3.083,4.491,-7.867)
C2': (3.513,5.387,-10.002)
O2': (3.561,5.171,-11.396)
N1: (-0.306,9.155,-12.477)
N2: (-0.647,7.333,-13.852)
N3: (0.522,6.993,-11.892)
N7: (1.469,9.267,-9.261)
N9: (1.695,7.097,-9.753)
O5': (4.573,6.360,-7.290)
O3': (2.966,3.054,-9.781)
Image (generated by PyMOL):