Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0595:0596
Extra
PDB:
ATOM 1 O3' C A 594 1.593 122.887 91.567 1.00 46.67 O
ATOM 2 P G A 595 3.156 123.272 91.545 1.00 46.79 P
ATOM 3 OP1 G A 595 3.859 122.349 92.476 1.00 48.18 O
ATOM 4 OP2 G A 595 3.267 124.743 91.744 1.00 45.25 O
ATOM 5 O5' G A 595 3.627 122.913 90.066 1.00 45.20 O
ATOM 6 C5' G A 595 3.504 121.575 89.558 1.00 41.60 C
ATOM 7 C4' G A 595 3.686 121.563 88.057 1.00 43.37 C
ATOM 8 O4' G A 595 2.713 122.441 87.430 1.00 43.15 O
ATOM 9 C3' G A 595 5.013 122.089 87.540 1.00 43.41 C
ATOM 10 O3' G A 595 6.018 121.091 87.622 1.00 46.06 O
ATOM 11 C2' G A 595 4.678 122.430 86.096 1.00 39.96 C
ATOM 12 O2' G A 595 4.610 121.284 85.282 1.00 41.56 O
ATOM 13 C1' G A 595 3.266 122.989 86.243 1.00 39.35 C
ATOM 14 N9 G A 595 3.249 124.441 86.344 1.00 37.13 N
ATOM 15 C8 G A 595 2.931 125.200 87.443 1.00 36.75 C
ATOM 16 N7 G A 595 3.019 126.483 87.220 1.00 37.17 N
ATOM 17 C5 G A 595 3.413 126.574 85.892 1.00 36.80 C
ATOM 18 C6 G A 595 3.674 127.709 85.088 1.00 37.93 C
ATOM 19 O6 G A 595 3.595 128.907 85.396 1.00 40.66 O
ATOM 20 N1 G A 595 4.065 127.346 83.802 1.00 35.27 N
ATOM 21 C2 G A 595 4.184 126.060 83.348 1.00 35.31 C
ATOM 22 N2 G A 595 4.582 125.912 82.072 1.00 34.77 N
ATOM 23 N3 G A 595 3.935 124.994 84.086 1.00 35.76 N
ATOM 24 C4 G A 595 3.559 125.323 85.339 1.00 36.66 C
ATOM 25 P A A 596 7.498 121.492 88.095 1.00 48.00 P
ATOM 26 OP1 A A 596 8.341 120.286 87.865 1.00 45.27 O
ATOM 27 OP2 A A 596 7.436 122.116 89.448 1.00 45.37 O
ATOM 28 O5' A A 596 7.935 122.634 87.077 1.00 46.41 O
TER
ATOM 1 O3' G B 595 6.018 121.091 87.622 1.00 46.06 O
ATOM 2 P A B 596 7.498 121.492 88.095 1.00 48.00 P
ATOM 3 OP1 A B 596 8.341 120.286 87.865 1.00 45.27 O
ATOM 4 OP2 A B 596 7.436 122.116 89.448 1.00 45.37 O
ATOM 5 O5' A B 596 7.935 122.634 87.077 1.00 46.41 O
ATOM 6 C5' A B 596 8.128 122.350 85.690 1.00 42.14 C
ATOM 7 C4' A B 596 8.279 123.636 84.926 1.00 43.05 C
ATOM 8 O4' A B 596 7.037 124.388 84.999 1.00 42.98 O
ATOM 9 C3' A B 596 9.318 124.605 85.466 1.00 43.28 C
ATOM 10 O3' A B 596 10.633 124.252 85.046 1.00 44.02 O
ATOM 11 C2' A B 596 8.838 125.918 84.867 1.00 42.30 C
ATOM 12 O2' A B 596 9.138 125.970 83.482 1.00 42.17 O
ATOM 13 C1' A B 596 7.321 125.779 85.043 1.00 40.76 C
ATOM 14 N9 A B 596 6.830 126.303 86.323 1.00 38.91 N
ATOM 15 C8 A B 596 6.495 125.587 87.450 1.00 37.95 C
ATOM 16 N7 A B 596 6.099 126.334 88.453 1.00 36.41 N
ATOM 17 C5 A B 596 6.170 127.627 87.955 1.00 35.39 C
ATOM 18 C6 A B 596 5.880 128.880 88.528 1.00 36.24 C
ATOM 19 N6 A B 596 5.440 129.041 89.780 1.00 37.08 N
ATOM 20 N1 A B 596 6.062 129.975 87.763 1.00 31.81 N
ATOM 21 C2 A B 596 6.504 129.814 86.517 1.00 32.51 C
ATOM 22 N3 A B 596 6.808 128.698 85.866 1.00 33.97 N
ATOM 23 C4 A B 596 6.617 127.625 86.647 1.00 36.08 C
ATOM 24 P U B 597 11.888 124.517 86.020 1.00 43.09 P
ATOM 25 OP1 U B 597 13.037 123.859 85.369 1.00 44.94 O
ATOM 26 OP2 U B 597 11.544 124.175 87.422 1.00 42.12 O
ATOM 27 O5' U B 597 12.120 126.086 85.946 1.00 42.04 O
TER
ATOM 2 P G A 595 3.156 123.272 91.545 1.00 46.79 P
ATOM 3 OP1 G A 595 3.859 122.349 92.476 1.00 48.18 O
ATOM 4 OP2 G A 595 3.267 124.743 91.744 1.00 45.25 O
ATOM 5 O5' G A 595 3.627 122.913 90.066 1.00 45.20 O
ATOM 6 C5' G A 595 3.504 121.575 89.558 1.00 41.60 C
ATOM 7 C4' G A 595 3.686 121.563 88.057 1.00 43.37 C
ATOM 8 O4' G A 595 2.713 122.441 87.430 1.00 43.15 O
ATOM 9 C3' G A 595 5.013 122.089 87.540 1.00 43.41 C
ATOM 10 O3' G A 595 6.018 121.091 87.622 1.00 46.06 O
ATOM 11 C2' G A 595 4.678 122.430 86.096 1.00 39.96 C
ATOM 12 O2' G A 595 4.610 121.284 85.282 1.00 41.56 O
ATOM 13 C1' G A 595 3.266 122.989 86.243 1.00 39.35 C
ATOM 14 N9 G A 595 3.249 124.441 86.344 1.00 37.13 N
ATOM 15 C8 G A 595 2.931 125.200 87.443 1.00 36.75 C
ATOM 16 N7 G A 595 3.019 126.483 87.220 1.00 37.17 N
ATOM 17 C5 G A 595 3.413 126.574 85.892 1.00 36.80 C
ATOM 18 C6 G A 595 3.674 127.709 85.088 1.00 37.93 C
ATOM 19 O6 G A 595 3.595 128.907 85.396 1.00 40.66 O
ATOM 20 N1 G A 595 4.065 127.346 83.802 1.00 35.27 N
ATOM 21 C2 G A 595 4.184 126.060 83.348 1.00 35.31 C
ATOM 22 N2 G A 595 4.582 125.912 82.072 1.00 34.77 N
ATOM 23 N3 G A 595 3.935 124.994 84.086 1.00 35.76 N
ATOM 24 C4 G A 595 3.559 125.323 85.339 1.00 36.66 C
ATOM 25 P A A 596 7.498 121.492 88.095 1.00 48.00 P
ATOM 26 OP1 A A 596 8.341 120.286 87.865 1.00 45.27 O
ATOM 27 OP2 A A 596 7.436 122.116 89.448 1.00 45.37 O
ATOM 28 O5' A A 596 7.935 122.634 87.077 1.00 46.41 O
TER
ATOM 1 O3' G B 595 6.018 121.091 87.622 1.00 46.06 O
ATOM 2 P A B 596 7.498 121.492 88.095 1.00 48.00 P
ATOM 3 OP1 A B 596 8.341 120.286 87.865 1.00 45.27 O
ATOM 4 OP2 A B 596 7.436 122.116 89.448 1.00 45.37 O
ATOM 5 O5' A B 596 7.935 122.634 87.077 1.00 46.41 O
ATOM 6 C5' A B 596 8.128 122.350 85.690 1.00 42.14 C
ATOM 7 C4' A B 596 8.279 123.636 84.926 1.00 43.05 C
ATOM 8 O4' A B 596 7.037 124.388 84.999 1.00 42.98 O
ATOM 9 C3' A B 596 9.318 124.605 85.466 1.00 43.28 C
ATOM 10 O3' A B 596 10.633 124.252 85.046 1.00 44.02 O
ATOM 11 C2' A B 596 8.838 125.918 84.867 1.00 42.30 C
ATOM 12 O2' A B 596 9.138 125.970 83.482 1.00 42.17 O
ATOM 13 C1' A B 596 7.321 125.779 85.043 1.00 40.76 C
ATOM 14 N9 A B 596 6.830 126.303 86.323 1.00 38.91 N
ATOM 15 C8 A B 596 6.495 125.587 87.450 1.00 37.95 C
ATOM 16 N7 A B 596 6.099 126.334 88.453 1.00 36.41 N
ATOM 17 C5 A B 596 6.170 127.627 87.955 1.00 35.39 C
ATOM 18 C6 A B 596 5.880 128.880 88.528 1.00 36.24 C
ATOM 19 N6 A B 596 5.440 129.041 89.780 1.00 37.08 N
ATOM 20 N1 A B 596 6.062 129.975 87.763 1.00 31.81 N
ATOM 21 C2 A B 596 6.504 129.814 86.517 1.00 32.51 C
ATOM 22 N3 A B 596 6.808 128.698 85.866 1.00 33.97 N
ATOM 23 C4 A B 596 6.617 127.625 86.647 1.00 36.08 C
ATOM 24 P U B 597 11.888 124.517 86.020 1.00 43.09 P
ATOM 25 OP1 U B 597 13.037 123.859 85.369 1.00 44.94 O
ATOM 26 OP2 U B 597 11.544 124.175 87.422 1.00 42.12 O
ATOM 27 O5' U B 597 12.120 126.086 85.946 1.00 42.04 O
TER
Atoms:
OP1: (3.859,122.349,92.476)
OP2: (3.267,124.743,91.744)
C3': (5.013,122.089,87.540)
C1': (3.266,122.989,86.243)
C5': (3.504,121.575,89.558)
O6: (3.595,128.907,85.396)
O4': (2.713,122.441,87.430)
C8: (2.931,125.200,87.443)
C2: (4.184,126.060,83.348)
C6: (3.674,127.709,85.088)
C5: (3.413,126.574,85.892)
C4: (3.559,125.323,85.339)
P: (3.156,123.272,91.545)
C4': (3.686,121.563,88.057)
C2': (4.678,122.430,86.096)
O2': (4.610,121.284,85.282)
N1: (4.065,127.346,83.802)
N2: (4.582,125.912,82.072)
N3: (3.935,124.994,84.086)
N7: (3.019,126.483,87.220)
N9: (3.249,124.441,86.344)
O5': (3.627,122.913,90.066)
O3': (6.018,121.091,87.622)
OP2: (3.267,124.743,91.744)
C3': (5.013,122.089,87.540)
C1': (3.266,122.989,86.243)
C5': (3.504,121.575,89.558)
O6: (3.595,128.907,85.396)
O4': (2.713,122.441,87.430)
C8: (2.931,125.200,87.443)
C2: (4.184,126.060,83.348)
C6: (3.674,127.709,85.088)
C5: (3.413,126.574,85.892)
C4: (3.559,125.323,85.339)
P: (3.156,123.272,91.545)
C4': (3.686,121.563,88.057)
C2': (4.678,122.430,86.096)
O2': (4.610,121.284,85.282)
N1: (4.065,127.346,83.802)
N2: (4.582,125.912,82.072)
N3: (3.935,124.994,84.086)
N7: (3.019,126.483,87.220)
N9: (3.249,124.441,86.344)
O5': (3.627,122.913,90.066)
O3': (6.018,121.091,87.622)
OP1: (8.341,120.286,87.865)
OP2: (7.436,122.116,89.448)
C3': (9.318,124.605,85.466)
C1': (7.321,125.779,85.043)
C5': (8.128,122.350,85.690)
O4': (7.037,124.388,84.999)
C8: (6.495,125.587,87.450)
O2': (9.138,125.970,83.482)
C6: (5.880,128.880,88.528)
C5: (6.170,127.627,87.955)
C4: (6.617,127.625,86.647)
P: (7.498,121.492,88.095)
C4': (8.279,123.636,84.926)
C2': (8.838,125.918,84.867)
C2: (6.504,129.814,86.517)
N1: (6.062,129.975,87.763)
N3: (6.808,128.698,85.866)
N6: (5.440,129.041,89.780)
N7: (6.099,126.334,88.453)
N9: (6.830,126.303,86.323)
O5': (7.935,122.634,87.077)
O3': (10.633,124.252,85.046)
OP2: (7.436,122.116,89.448)
C3': (9.318,124.605,85.466)
C1': (7.321,125.779,85.043)
C5': (8.128,122.350,85.690)
O4': (7.037,124.388,84.999)
C8: (6.495,125.587,87.450)
O2': (9.138,125.970,83.482)
C6: (5.880,128.880,88.528)
C5: (6.170,127.627,87.955)
C4: (6.617,127.625,86.647)
P: (7.498,121.492,88.095)
C4': (8.279,123.636,84.926)
C2': (8.838,125.918,84.867)
C2: (6.504,129.814,86.517)
N1: (6.062,129.975,87.763)
N3: (6.808,128.698,85.866)
N6: (5.440,129.041,89.780)
N7: (6.099,126.334,88.453)
N9: (6.830,126.303,86.323)
O5': (7.935,122.634,87.077)
O3': (10.633,124.252,85.046)
Image (generated by PyMOL):