Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A59:A87
Extra
PDB:
ATOM 1 O3' U A 58 -14.158 -70.513 49.407 1.00 0.01 O
ATOM 2 P G A 59 -13.760 -71.730 48.479 1.00 0.01 P
ATOM 3 OP1 G A 59 -12.363 -72.101 48.826 1.00 0.01 O
ATOM 4 OP2 G A 59 -14.073 -71.340 47.082 1.00 0.01 O
ATOM 5 O5' G A 59 -14.778 -72.849 48.957 1.00 0.01 O
ATOM 6 C5' G A 59 -14.703 -73.383 50.264 1.00 0.01 C
ATOM 7 C4' G A 59 -14.279 -74.817 50.222 1.00 0.01 C
ATOM 8 O4' G A 59 -15.399 -75.605 49.761 1.00 0.01 O
ATOM 9 C3' G A 59 -13.107 -75.101 49.291 1.00 0.01 C
ATOM 10 O3' G A 59 -12.031 -75.825 50.004 1.00 0.01 O
ATOM 11 C2' G A 59 -13.737 -75.815 48.076 1.00 0.01 C
ATOM 12 O2' G A 59 -12.980 -76.845 47.510 1.00 0.01 O
ATOM 13 C1' G A 59 -15.097 -76.310 48.585 1.00 0.01 C
ATOM 14 N9 G A 59 -16.205 -76.068 47.649 1.00 0.07 N
ATOM 15 C8 G A 59 -16.158 -75.302 46.511 1.00 0.07 C
ATOM 16 N7 G A 59 -17.281 -75.212 45.857 1.00 0.07 N
ATOM 17 C5 G A 59 -18.133 -75.962 46.620 1.00 0.07 C
ATOM 18 C6 G A 59 -19.497 -76.241 46.382 1.00 0.07 C
ATOM 19 O6 G A 59 -20.152 -75.818 45.417 1.00 0.07 O
ATOM 20 N1 G A 59 -20.068 -77.074 47.358 1.00 0.07 N
ATOM 21 C2 G A 59 -19.376 -77.550 48.443 1.00 0.07 C
ATOM 22 N2 G A 59 -20.070 -78.311 49.303 1.00 0.07 N
ATOM 23 N3 G A 59 -18.091 -77.284 48.662 1.00 0.07 N
ATOM 24 C4 G A 59 -17.516 -76.495 47.722 1.00 0.07 C
ATOM 25 P C A 60 -11.639 -77.395 49.829 1.00 0.01 P
ATOM 26 OP1 C A 60 -12.874 -78.207 49.977 1.00 0.01 O
ATOM 27 OP2 C A 60 -10.532 -77.646 50.756 1.00 0.01 O
ATOM 28 O5' C A 60 -11.090 -77.477 48.356 1.00 0.01 O
TER
ATOM 1 O3' U B 86 -19.308 -83.418 53.177 1.00 0.08 O
ATOM 2 P G B 87 -19.870 -83.283 51.692 1.00 0.01 P
ATOM 3 OP1 G B 87 -19.831 -84.630 51.052 1.00 0.01 O
ATOM 4 OP2 G B 87 -19.144 -82.151 51.057 1.00 0.01 O
ATOM 5 O5' G B 87 -21.363 -82.874 51.953 1.00 0.01 O
ATOM 6 C5' G B 87 -22.105 -83.457 52.999 1.00 0.01 C
ATOM 7 C4' G B 87 -23.559 -83.404 52.682 1.00 0.01 C
ATOM 8 O4' G B 87 -24.046 -82.051 52.864 1.00 0.01 O
ATOM 9 C3' G B 87 -23.885 -83.710 51.252 1.00 0.01 C
ATOM 10 O3' G B 87 -23.961 -85.076 50.998 1.00 0.01 O
ATOM 11 C2' G B 87 -25.182 -82.968 51.050 1.00 0.01 C
ATOM 12 O2' G B 87 -26.235 -83.620 51.730 1.00 0.01 O
ATOM 13 C1' G B 87 -24.867 -81.692 51.789 1.00 0.01 C
ATOM 14 N9 G B 87 -24.125 -80.760 50.938 1.00 0.01 N
ATOM 15 C8 G B 87 -22.796 -80.459 50.955 1.00 0.01 C
ATOM 16 N7 G B 87 -22.447 -79.598 50.051 1.00 0.01 N
ATOM 17 C5 G B 87 -23.630 -79.327 49.375 1.00 0.01 C
ATOM 18 C6 G B 87 -23.915 -78.474 48.273 1.00 0.01 C
ATOM 19 O6 G B 87 -23.114 -77.756 47.646 1.00 0.01 O
ATOM 20 N1 G B 87 -25.271 -78.523 47.929 1.00 0.01 N
ATOM 21 C2 G B 87 -26.222 -79.281 48.557 1.00 0.01 C
ATOM 22 N2 G B 87 -27.490 -79.230 48.152 1.00 0.01 N
ATOM 23 N3 G B 87 -25.961 -80.075 49.556 1.00 0.01 N
ATOM 24 C4 G B 87 -24.664 -80.049 49.913 1.00 0.01 C
ATOM 25 P A B 88 -23.811 -85.590 49.503 1.00 0.02 P
ATOM 26 OP1 A B 88 -24.253 -87.025 49.501 1.00 0.02 O
ATOM 27 OP2 A B 88 -22.431 -85.247 49.060 1.00 0.02 O
ATOM 28 O5' A B 88 -24.870 -84.702 48.705 1.00 0.02 O
TER
ATOM 2 P G A 59 -13.760 -71.730 48.479 1.00 0.01 P
ATOM 3 OP1 G A 59 -12.363 -72.101 48.826 1.00 0.01 O
ATOM 4 OP2 G A 59 -14.073 -71.340 47.082 1.00 0.01 O
ATOM 5 O5' G A 59 -14.778 -72.849 48.957 1.00 0.01 O
ATOM 6 C5' G A 59 -14.703 -73.383 50.264 1.00 0.01 C
ATOM 7 C4' G A 59 -14.279 -74.817 50.222 1.00 0.01 C
ATOM 8 O4' G A 59 -15.399 -75.605 49.761 1.00 0.01 O
ATOM 9 C3' G A 59 -13.107 -75.101 49.291 1.00 0.01 C
ATOM 10 O3' G A 59 -12.031 -75.825 50.004 1.00 0.01 O
ATOM 11 C2' G A 59 -13.737 -75.815 48.076 1.00 0.01 C
ATOM 12 O2' G A 59 -12.980 -76.845 47.510 1.00 0.01 O
ATOM 13 C1' G A 59 -15.097 -76.310 48.585 1.00 0.01 C
ATOM 14 N9 G A 59 -16.205 -76.068 47.649 1.00 0.07 N
ATOM 15 C8 G A 59 -16.158 -75.302 46.511 1.00 0.07 C
ATOM 16 N7 G A 59 -17.281 -75.212 45.857 1.00 0.07 N
ATOM 17 C5 G A 59 -18.133 -75.962 46.620 1.00 0.07 C
ATOM 18 C6 G A 59 -19.497 -76.241 46.382 1.00 0.07 C
ATOM 19 O6 G A 59 -20.152 -75.818 45.417 1.00 0.07 O
ATOM 20 N1 G A 59 -20.068 -77.074 47.358 1.00 0.07 N
ATOM 21 C2 G A 59 -19.376 -77.550 48.443 1.00 0.07 C
ATOM 22 N2 G A 59 -20.070 -78.311 49.303 1.00 0.07 N
ATOM 23 N3 G A 59 -18.091 -77.284 48.662 1.00 0.07 N
ATOM 24 C4 G A 59 -17.516 -76.495 47.722 1.00 0.07 C
ATOM 25 P C A 60 -11.639 -77.395 49.829 1.00 0.01 P
ATOM 26 OP1 C A 60 -12.874 -78.207 49.977 1.00 0.01 O
ATOM 27 OP2 C A 60 -10.532 -77.646 50.756 1.00 0.01 O
ATOM 28 O5' C A 60 -11.090 -77.477 48.356 1.00 0.01 O
TER
ATOM 1 O3' U B 86 -19.308 -83.418 53.177 1.00 0.08 O
ATOM 2 P G B 87 -19.870 -83.283 51.692 1.00 0.01 P
ATOM 3 OP1 G B 87 -19.831 -84.630 51.052 1.00 0.01 O
ATOM 4 OP2 G B 87 -19.144 -82.151 51.057 1.00 0.01 O
ATOM 5 O5' G B 87 -21.363 -82.874 51.953 1.00 0.01 O
ATOM 6 C5' G B 87 -22.105 -83.457 52.999 1.00 0.01 C
ATOM 7 C4' G B 87 -23.559 -83.404 52.682 1.00 0.01 C
ATOM 8 O4' G B 87 -24.046 -82.051 52.864 1.00 0.01 O
ATOM 9 C3' G B 87 -23.885 -83.710 51.252 1.00 0.01 C
ATOM 10 O3' G B 87 -23.961 -85.076 50.998 1.00 0.01 O
ATOM 11 C2' G B 87 -25.182 -82.968 51.050 1.00 0.01 C
ATOM 12 O2' G B 87 -26.235 -83.620 51.730 1.00 0.01 O
ATOM 13 C1' G B 87 -24.867 -81.692 51.789 1.00 0.01 C
ATOM 14 N9 G B 87 -24.125 -80.760 50.938 1.00 0.01 N
ATOM 15 C8 G B 87 -22.796 -80.459 50.955 1.00 0.01 C
ATOM 16 N7 G B 87 -22.447 -79.598 50.051 1.00 0.01 N
ATOM 17 C5 G B 87 -23.630 -79.327 49.375 1.00 0.01 C
ATOM 18 C6 G B 87 -23.915 -78.474 48.273 1.00 0.01 C
ATOM 19 O6 G B 87 -23.114 -77.756 47.646 1.00 0.01 O
ATOM 20 N1 G B 87 -25.271 -78.523 47.929 1.00 0.01 N
ATOM 21 C2 G B 87 -26.222 -79.281 48.557 1.00 0.01 C
ATOM 22 N2 G B 87 -27.490 -79.230 48.152 1.00 0.01 N
ATOM 23 N3 G B 87 -25.961 -80.075 49.556 1.00 0.01 N
ATOM 24 C4 G B 87 -24.664 -80.049 49.913 1.00 0.01 C
ATOM 25 P A B 88 -23.811 -85.590 49.503 1.00 0.02 P
ATOM 26 OP1 A B 88 -24.253 -87.025 49.501 1.00 0.02 O
ATOM 27 OP2 A B 88 -22.431 -85.247 49.060 1.00 0.02 O
ATOM 28 O5' A B 88 -24.870 -84.702 48.705 1.00 0.02 O
TER
Atoms:
OP1: (-12.363,-72.101,48.826)
OP2: (-14.073,-71.340,47.082)
C3': (-13.107,-75.101,49.291)
C1': (-15.097,-76.310,48.585)
C5': (-14.703,-73.383,50.264)
O6: (-20.152,-75.818,45.417)
O4': (-15.399,-75.605,49.761)
C8: (-16.158,-75.302,46.511)
C2: (-19.376,-77.550,48.443)
C6: (-19.497,-76.241,46.382)
C5: (-18.133,-75.962,46.620)
C4: (-17.516,-76.495,47.722)
P: (-13.760,-71.730,48.479)
C4': (-14.279,-74.817,50.222)
C2': (-13.737,-75.815,48.076)
O2': (-12.980,-76.845,47.510)
N1: (-20.068,-77.074,47.358)
N2: (-20.070,-78.311,49.303)
N3: (-18.091,-77.284,48.662)
N7: (-17.281,-75.212,45.857)
N9: (-16.205,-76.068,47.649)
O5': (-14.778,-72.849,48.957)
O3': (-12.031,-75.825,50.004)
OP2: (-14.073,-71.340,47.082)
C3': (-13.107,-75.101,49.291)
C1': (-15.097,-76.310,48.585)
C5': (-14.703,-73.383,50.264)
O6: (-20.152,-75.818,45.417)
O4': (-15.399,-75.605,49.761)
C8: (-16.158,-75.302,46.511)
C2: (-19.376,-77.550,48.443)
C6: (-19.497,-76.241,46.382)
C5: (-18.133,-75.962,46.620)
C4: (-17.516,-76.495,47.722)
P: (-13.760,-71.730,48.479)
C4': (-14.279,-74.817,50.222)
C2': (-13.737,-75.815,48.076)
O2': (-12.980,-76.845,47.510)
N1: (-20.068,-77.074,47.358)
N2: (-20.070,-78.311,49.303)
N3: (-18.091,-77.284,48.662)
N7: (-17.281,-75.212,45.857)
N9: (-16.205,-76.068,47.649)
O5': (-14.778,-72.849,48.957)
O3': (-12.031,-75.825,50.004)
OP1: (-19.831,-84.630,51.052)
OP2: (-19.144,-82.151,51.057)
C3': (-23.885,-83.710,51.252)
C1': (-24.867,-81.692,51.789)
C5': (-22.105,-83.457,52.999)
O6: (-23.114,-77.756,47.646)
O4': (-24.046,-82.051,52.864)
C8: (-22.796,-80.459,50.955)
C2: (-26.222,-79.281,48.557)
C6: (-23.915,-78.474,48.273)
C5: (-23.630,-79.327,49.375)
C4: (-24.664,-80.049,49.913)
P: (-19.870,-83.283,51.692)
C4': (-23.559,-83.404,52.682)
C2': (-25.182,-82.968,51.050)
O2': (-26.235,-83.620,51.730)
N1: (-25.271,-78.523,47.929)
N2: (-27.490,-79.230,48.152)
N3: (-25.961,-80.075,49.556)
N7: (-22.447,-79.598,50.051)
N9: (-24.125,-80.760,50.938)
O5': (-21.363,-82.874,51.953)
O3': (-23.961,-85.076,50.998)
OP2: (-19.144,-82.151,51.057)
C3': (-23.885,-83.710,51.252)
C1': (-24.867,-81.692,51.789)
C5': (-22.105,-83.457,52.999)
O6: (-23.114,-77.756,47.646)
O4': (-24.046,-82.051,52.864)
C8: (-22.796,-80.459,50.955)
C2: (-26.222,-79.281,48.557)
C6: (-23.915,-78.474,48.273)
C5: (-23.630,-79.327,49.375)
C4: (-24.664,-80.049,49.913)
P: (-19.870,-83.283,51.692)
C4': (-23.559,-83.404,52.682)
C2': (-25.182,-82.968,51.050)
O2': (-26.235,-83.620,51.730)
N1: (-25.271,-78.523,47.929)
N2: (-27.490,-79.230,48.152)
N3: (-25.961,-80.075,49.556)
N7: (-22.447,-79.598,50.051)
N9: (-24.125,-80.760,50.938)
O5': (-21.363,-82.874,51.953)
O3': (-23.961,-85.076,50.998)
Image (generated by PyMOL):