Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A34:A41
Extra
PDB:
ATOM 1 O3' A A 33 -11.026 -22.238 30.513 1.00 27.15 O
ATOM 2 P U A 34 -10.203 -23.609 30.378 1.00 36.17 P
ATOM 3 OP1 U A 34 -11.180 -24.676 30.039 1.00 38.08 O
ATOM 4 OP2 U A 34 -9.388 -23.754 31.606 1.00 29.77 O
ATOM 5 O5' U A 34 -9.260 -23.321 29.132 1.00 30.74 O
ATOM 6 C5' U A 34 -8.031 -24.007 28.971 1.00 29.65 C
ATOM 7 C4' U A 34 -7.140 -23.298 27.986 1.00 29.26 C
ATOM 8 O4' U A 34 -6.795 -21.987 28.499 1.00 29.63 O
ATOM 9 C3' U A 34 -5.800 -23.958 27.703 1.00 28.41 C
ATOM 10 O3' U A 34 -5.894 -24.985 26.735 1.00 28.62 O
ATOM 11 C2' U A 34 -4.941 -22.785 27.254 1.00 29.51 C
ATOM 12 O2' U A 34 -5.225 -22.452 25.905 1.00 28.47 O
ATOM 13 C1' U A 34 -5.470 -21.663 28.144 1.00 28.96 C
ATOM 14 N1 U A 34 -4.678 -21.508 29.385 1.00 27.71 N
ATOM 15 C2 U A 34 -3.470 -20.840 29.306 1.00 26.80 C
ATOM 16 O2 U A 34 -3.023 -20.395 28.263 1.00 27.49 O
ATOM 17 N3 U A 34 -2.797 -20.720 30.494 1.00 25.97 N
ATOM 18 C4 U A 34 -3.203 -21.183 31.727 1.00 28.64 C
ATOM 19 O4 U A 34 -2.484 -20.997 32.709 1.00 30.25 O
ATOM 20 C5 U A 34 -4.468 -21.852 31.728 1.00 28.51 C
ATOM 21 C6 U A 34 -5.146 -21.986 30.584 1.00 26.16 C
ATOM 22 P G A 35 -5.798 -26.525 27.173 1.00 28.96 P
ATOM 23 OP1 G A 35 -7.163 -27.098 27.051 1.00 28.50 O
ATOM 24 OP2 G A 35 -5.120 -26.565 28.494 1.00 32.23 O
ATOM 25 O5' G A 35 -4.846 -27.144 26.058 1.00 31.59 O
TER
ATOM 1 O3' G B 40 1.056 -20.857 37.238 1.00 32.99 O
ATOM 2 P U B 41 0.632 -19.357 36.846 1.00 33.81 P
ATOM 3 OP1 U B 41 0.591 -18.571 38.104 1.00 31.40 O
ATOM 4 OP2 U B 41 -0.599 -19.448 36.021 1.00 30.04 O
ATOM 5 O5' U B 41 1.850 -18.872 35.949 1.00 34.62 O
ATOM 6 C5' U B 41 3.166 -18.785 36.485 1.00 35.16 C
ATOM 7 C4' U B 41 4.088 -18.048 35.552 1.00 36.64 C
ATOM 8 O4' U B 41 4.009 -18.661 34.234 1.00 37.58 O
ATOM 9 C3' U B 41 3.751 -16.572 35.351 1.00 38.50 C
ATOM 10 O3' U B 41 4.950 -15.838 35.107 1.00 43.78 O
ATOM 11 C2' U B 41 2.905 -16.593 34.086 1.00 35.57 C
ATOM 12 O2' U B 41 2.878 -15.374 33.376 1.00 39.14 O
ATOM 13 C1' U B 41 3.581 -17.703 33.284 1.00 36.33 C
ATOM 14 N1 U B 41 2.682 -18.370 32.319 1.00 32.35 N
ATOM 15 C2 U B 41 3.048 -18.377 30.985 1.00 31.97 C
ATOM 16 O2 U B 41 4.084 -17.878 30.575 1.00 35.12 O
ATOM 17 N3 U B 41 2.158 -18.995 30.145 1.00 27.55 N
ATOM 18 C4 U B 41 0.963 -19.587 30.496 1.00 29.84 C
ATOM 19 O4 U B 41 0.268 -20.105 29.623 1.00 27.46 O
ATOM 20 C5 U B 41 0.652 -19.533 31.891 1.00 31.94 C
ATOM 21 C6 U B 41 1.500 -18.935 32.733 1.00 30.42 C
ATOM 22 P C B 42 5.490 -14.791 36.198 1.00 52.89 P
ATOM 23 OP1 C B 42 6.478 -15.509 37.040 1.00 52.46 O
ATOM 24 OP2 C B 42 4.302 -14.185 36.850 1.00 48.59 O
ATOM 25 O5' C B 42 6.230 -13.702 35.305 1.00 48.48 O
TER
ATOM 2 P U A 34 -10.203 -23.609 30.378 1.00 36.17 P
ATOM 3 OP1 U A 34 -11.180 -24.676 30.039 1.00 38.08 O
ATOM 4 OP2 U A 34 -9.388 -23.754 31.606 1.00 29.77 O
ATOM 5 O5' U A 34 -9.260 -23.321 29.132 1.00 30.74 O
ATOM 6 C5' U A 34 -8.031 -24.007 28.971 1.00 29.65 C
ATOM 7 C4' U A 34 -7.140 -23.298 27.986 1.00 29.26 C
ATOM 8 O4' U A 34 -6.795 -21.987 28.499 1.00 29.63 O
ATOM 9 C3' U A 34 -5.800 -23.958 27.703 1.00 28.41 C
ATOM 10 O3' U A 34 -5.894 -24.985 26.735 1.00 28.62 O
ATOM 11 C2' U A 34 -4.941 -22.785 27.254 1.00 29.51 C
ATOM 12 O2' U A 34 -5.225 -22.452 25.905 1.00 28.47 O
ATOM 13 C1' U A 34 -5.470 -21.663 28.144 1.00 28.96 C
ATOM 14 N1 U A 34 -4.678 -21.508 29.385 1.00 27.71 N
ATOM 15 C2 U A 34 -3.470 -20.840 29.306 1.00 26.80 C
ATOM 16 O2 U A 34 -3.023 -20.395 28.263 1.00 27.49 O
ATOM 17 N3 U A 34 -2.797 -20.720 30.494 1.00 25.97 N
ATOM 18 C4 U A 34 -3.203 -21.183 31.727 1.00 28.64 C
ATOM 19 O4 U A 34 -2.484 -20.997 32.709 1.00 30.25 O
ATOM 20 C5 U A 34 -4.468 -21.852 31.728 1.00 28.51 C
ATOM 21 C6 U A 34 -5.146 -21.986 30.584 1.00 26.16 C
ATOM 22 P G A 35 -5.798 -26.525 27.173 1.00 28.96 P
ATOM 23 OP1 G A 35 -7.163 -27.098 27.051 1.00 28.50 O
ATOM 24 OP2 G A 35 -5.120 -26.565 28.494 1.00 32.23 O
ATOM 25 O5' G A 35 -4.846 -27.144 26.058 1.00 31.59 O
TER
ATOM 1 O3' G B 40 1.056 -20.857 37.238 1.00 32.99 O
ATOM 2 P U B 41 0.632 -19.357 36.846 1.00 33.81 P
ATOM 3 OP1 U B 41 0.591 -18.571 38.104 1.00 31.40 O
ATOM 4 OP2 U B 41 -0.599 -19.448 36.021 1.00 30.04 O
ATOM 5 O5' U B 41 1.850 -18.872 35.949 1.00 34.62 O
ATOM 6 C5' U B 41 3.166 -18.785 36.485 1.00 35.16 C
ATOM 7 C4' U B 41 4.088 -18.048 35.552 1.00 36.64 C
ATOM 8 O4' U B 41 4.009 -18.661 34.234 1.00 37.58 O
ATOM 9 C3' U B 41 3.751 -16.572 35.351 1.00 38.50 C
ATOM 10 O3' U B 41 4.950 -15.838 35.107 1.00 43.78 O
ATOM 11 C2' U B 41 2.905 -16.593 34.086 1.00 35.57 C
ATOM 12 O2' U B 41 2.878 -15.374 33.376 1.00 39.14 O
ATOM 13 C1' U B 41 3.581 -17.703 33.284 1.00 36.33 C
ATOM 14 N1 U B 41 2.682 -18.370 32.319 1.00 32.35 N
ATOM 15 C2 U B 41 3.048 -18.377 30.985 1.00 31.97 C
ATOM 16 O2 U B 41 4.084 -17.878 30.575 1.00 35.12 O
ATOM 17 N3 U B 41 2.158 -18.995 30.145 1.00 27.55 N
ATOM 18 C4 U B 41 0.963 -19.587 30.496 1.00 29.84 C
ATOM 19 O4 U B 41 0.268 -20.105 29.623 1.00 27.46 O
ATOM 20 C5 U B 41 0.652 -19.533 31.891 1.00 31.94 C
ATOM 21 C6 U B 41 1.500 -18.935 32.733 1.00 30.42 C
ATOM 22 P C B 42 5.490 -14.791 36.198 1.00 52.89 P
ATOM 23 OP1 C B 42 6.478 -15.509 37.040 1.00 52.46 O
ATOM 24 OP2 C B 42 4.302 -14.185 36.850 1.00 48.59 O
ATOM 25 O5' C B 42 6.230 -13.702 35.305 1.00 48.48 O
TER
Atoms:
C4: (-3.203,-21.183,31.727)
N3: (-2.797,-20.720,30.494)
OP1: (-11.180,-24.676,30.039)
OP2: (-9.388,-23.754,31.606)
C2: (-3.470,-20.840,29.306)
C1': (-5.470,-21.663,28.144)
C3': (-5.800,-23.958,27.703)
O5': (-9.260,-23.321,29.132)
O4': (-6.795,-21.987,28.499)
C5': (-8.031,-24.007,28.971)
P: (-10.203,-23.609,30.378)
C4': (-7.140,-23.298,27.986)
C2': (-4.941,-22.785,27.254)
O2': (-5.225,-22.452,25.905)
N1: (-4.678,-21.508,29.385)
O4: (-2.484,-20.997,32.709)
O2: (-3.023,-20.395,28.263)
C6: (-5.146,-21.986,30.584)
C5: (-4.468,-21.852,31.728)
O3': (-5.894,-24.985,26.735)
N3: (-2.797,-20.720,30.494)
OP1: (-11.180,-24.676,30.039)
OP2: (-9.388,-23.754,31.606)
C2: (-3.470,-20.840,29.306)
C1': (-5.470,-21.663,28.144)
C3': (-5.800,-23.958,27.703)
O5': (-9.260,-23.321,29.132)
O4': (-6.795,-21.987,28.499)
C5': (-8.031,-24.007,28.971)
P: (-10.203,-23.609,30.378)
C4': (-7.140,-23.298,27.986)
C2': (-4.941,-22.785,27.254)
O2': (-5.225,-22.452,25.905)
N1: (-4.678,-21.508,29.385)
O4: (-2.484,-20.997,32.709)
O2: (-3.023,-20.395,28.263)
C6: (-5.146,-21.986,30.584)
C5: (-4.468,-21.852,31.728)
O3': (-5.894,-24.985,26.735)
C4: (0.963,-19.587,30.496)
N3: (2.158,-18.995,30.145)
OP1: (0.591,-18.571,38.104)
OP2: (-0.599,-19.448,36.021)
C2: (3.048,-18.377,30.985)
C1': (3.581,-17.703,33.284)
C3': (3.751,-16.572,35.351)
O5': (1.850,-18.872,35.949)
O4': (4.009,-18.661,34.234)
C5': (3.166,-18.785,36.485)
P: (0.632,-19.357,36.846)
C4': (4.088,-18.048,35.552)
C2': (2.905,-16.593,34.086)
O2': (2.878,-15.374,33.376)
N1: (2.682,-18.370,32.319)
O4: (0.268,-20.105,29.623)
O2: (4.084,-17.878,30.575)
C6: (1.500,-18.935,32.733)
C5: (0.652,-19.533,31.891)
O3': (4.950,-15.838,35.107)
N3: (2.158,-18.995,30.145)
OP1: (0.591,-18.571,38.104)
OP2: (-0.599,-19.448,36.021)
C2: (3.048,-18.377,30.985)
C1': (3.581,-17.703,33.284)
C3': (3.751,-16.572,35.351)
O5': (1.850,-18.872,35.949)
O4': (4.009,-18.661,34.234)
C5': (3.166,-18.785,36.485)
P: (0.632,-19.357,36.846)
C4': (4.088,-18.048,35.552)
C2': (2.905,-16.593,34.086)
O2': (2.878,-15.374,33.376)
N1: (2.682,-18.370,32.319)
O4: (0.268,-20.105,29.623)
O2: (4.084,-17.878,30.575)
C6: (1.500,-18.935,32.733)
C5: (0.652,-19.533,31.891)
O3': (4.950,-15.838,35.107)
Image (generated by PyMOL):