Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12863:12873
Extra
PDB:
ATOM 1 O3' C A2862 18.584 29.133 -5.815 1.00 54.92 O
ATOM 2 P U A2863 18.158 28.046 -6.911 1.00 59.06 P
ATOM 3 OP1 U A2863 17.275 28.719 -7.907 1.00 59.83 O
ATOM 4 OP2 U A2863 17.631 26.894 -6.178 1.00 58.57 O
ATOM 5 O5' U A2863 19.530 27.659 -7.590 1.00 59.05 O
ATOM 6 C5' U A2863 20.379 28.642 -8.144 1.00 59.37 C
ATOM 7 C4' U A2863 21.818 28.233 -7.993 1.00 58.97 C
ATOM 8 O4' U A2863 22.126 28.116 -6.587 1.00 58.25 O
ATOM 9 C3' U A2863 22.182 26.858 -8.528 1.00 58.88 C
ATOM 10 O3' U A2863 22.309 26.779 -9.931 1.00 59.51 O
ATOM 11 C2' U A2863 23.446 26.531 -7.762 1.00 58.25 C
ATOM 12 O2' U A2863 24.566 27.221 -8.284 1.00 58.47 O
ATOM 13 C1' U A2863 23.110 27.120 -6.400 1.00 57.80 C
ATOM 14 N1 U A2863 22.586 26.097 -5.501 1.00 57.26 N
ATOM 15 C2 U A2863 23.561 25.228 -5.028 1.00 56.73 C
ATOM 16 O2 U A2863 24.754 25.255 -5.286 1.00 56.67 O
ATOM 17 N3 U A2863 23.050 24.279 -4.232 1.00 56.27 N
ATOM 18 C4 U A2863 21.749 24.116 -3.887 1.00 56.29 C
ATOM 19 O4 U A2863 21.542 23.192 -3.143 1.00 55.82 O
ATOM 20 C5 U A2863 20.816 25.032 -4.410 1.00 56.85 C
ATOM 21 C6 U A2863 21.257 25.990 -5.211 1.00 57.32 C
ATOM 22 P G A2864 21.822 25.445 -10.663 1.00 54.66 P
ATOM 23 OP1 G A2864 22.120 25.560 -12.089 1.00 55.33 O
ATOM 24 OP2 G A2864 20.420 25.198 -10.232 1.00 54.63 O
ATOM 25 O5' G A2864 22.756 24.355 -10.005 1.00 53.98 O
TER
ATOM 1 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U B2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U B2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U B2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U B2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U B2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U B2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U B2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U B2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U B2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U B2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U B2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U B2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U B2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U B2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U B2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U B2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A B2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A B2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A B2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A B2874 26.891 15.766 1.987 1.00 51.91 O
TER
ATOM 2 P U A2863 18.158 28.046 -6.911 1.00 59.06 P
ATOM 3 OP1 U A2863 17.275 28.719 -7.907 1.00 59.83 O
ATOM 4 OP2 U A2863 17.631 26.894 -6.178 1.00 58.57 O
ATOM 5 O5' U A2863 19.530 27.659 -7.590 1.00 59.05 O
ATOM 6 C5' U A2863 20.379 28.642 -8.144 1.00 59.37 C
ATOM 7 C4' U A2863 21.818 28.233 -7.993 1.00 58.97 C
ATOM 8 O4' U A2863 22.126 28.116 -6.587 1.00 58.25 O
ATOM 9 C3' U A2863 22.182 26.858 -8.528 1.00 58.88 C
ATOM 10 O3' U A2863 22.309 26.779 -9.931 1.00 59.51 O
ATOM 11 C2' U A2863 23.446 26.531 -7.762 1.00 58.25 C
ATOM 12 O2' U A2863 24.566 27.221 -8.284 1.00 58.47 O
ATOM 13 C1' U A2863 23.110 27.120 -6.400 1.00 57.80 C
ATOM 14 N1 U A2863 22.586 26.097 -5.501 1.00 57.26 N
ATOM 15 C2 U A2863 23.561 25.228 -5.028 1.00 56.73 C
ATOM 16 O2 U A2863 24.754 25.255 -5.286 1.00 56.67 O
ATOM 17 N3 U A2863 23.050 24.279 -4.232 1.00 56.27 N
ATOM 18 C4 U A2863 21.749 24.116 -3.887 1.00 56.29 C
ATOM 19 O4 U A2863 21.542 23.192 -3.143 1.00 55.82 O
ATOM 20 C5 U A2863 20.816 25.032 -4.410 1.00 56.85 C
ATOM 21 C6 U A2863 21.257 25.990 -5.211 1.00 57.32 C
ATOM 22 P G A2864 21.822 25.445 -10.663 1.00 54.66 P
ATOM 23 OP1 G A2864 22.120 25.560 -12.089 1.00 55.33 O
ATOM 24 OP2 G A2864 20.420 25.198 -10.232 1.00 54.63 O
ATOM 25 O5' G A2864 22.756 24.355 -10.005 1.00 53.98 O
TER
ATOM 1 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U B2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U B2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U B2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U B2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U B2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U B2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U B2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U B2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U B2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U B2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U B2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U B2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U B2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U B2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U B2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U B2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A B2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A B2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A B2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A B2874 26.891 15.766 1.987 1.00 51.91 O
TER
Atoms:
C4: (21.749,24.116,-3.887)
N3: (23.050,24.279,-4.232)
OP1: (17.275,28.719,-7.907)
OP2: (17.631,26.894,-6.178)
C2: (23.561,25.228,-5.028)
C1': (23.110,27.120,-6.400)
C3': (22.182,26.858,-8.528)
O5': (19.530,27.659,-7.590)
O4': (22.126,28.116,-6.587)
C5': (20.379,28.642,-8.144)
P: (18.158,28.046,-6.911)
C4': (21.818,28.233,-7.993)
C2': (23.446,26.531,-7.762)
O2': (24.566,27.221,-8.284)
N1: (22.586,26.097,-5.501)
O4: (21.542,23.192,-3.143)
O2: (24.754,25.255,-5.286)
C6: (21.257,25.990,-5.211)
C5: (20.816,25.032,-4.410)
O3': (22.309,26.779,-9.931)
N3: (23.050,24.279,-4.232)
OP1: (17.275,28.719,-7.907)
OP2: (17.631,26.894,-6.178)
C2: (23.561,25.228,-5.028)
C1': (23.110,27.120,-6.400)
C3': (22.182,26.858,-8.528)
O5': (19.530,27.659,-7.590)
O4': (22.126,28.116,-6.587)
C5': (20.379,28.642,-8.144)
P: (18.158,28.046,-6.911)
C4': (21.818,28.233,-7.993)
C2': (23.446,26.531,-7.762)
O2': (24.566,27.221,-8.284)
N1: (22.586,26.097,-5.501)
O4: (21.542,23.192,-3.143)
O2: (24.754,25.255,-5.286)
C6: (21.257,25.990,-5.211)
C5: (20.816,25.032,-4.410)
O3': (22.309,26.779,-9.931)
C4: (25.013,21.859,-2.506)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
Image (generated by PyMOL):