Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2023:A2493
Extra
PDB:
ATOM 1 O3' G A2022 -90.366 -79.190 0.006 1.00 0.01 O
ATOM 2 P A A2023 -90.980 -77.735 0.198 1.00 0.01 P
ATOM 3 OP1 A A2023 -92.015 -77.815 1.230 1.00 0.01 O
ATOM 4 OP2 A A2023 -91.362 -77.245 -1.129 1.00 0.01 O
ATOM 5 O5' A A2023 -89.744 -76.915 0.732 1.00 0.01 O
ATOM 6 C5' A A2023 -89.381 -76.935 2.103 1.00 0.01 C
ATOM 7 C4' A A2023 -88.165 -76.085 2.352 1.00 0.01 C
ATOM 8 O4' A A2023 -88.135 -75.660 3.740 1.00 0.01 O
ATOM 9 C3' A A2023 -86.823 -76.753 2.079 1.00 0.01 C
ATOM 10 O3' A A2023 -85.984 -75.853 1.355 1.00 0.01 O
ATOM 11 C2' A A2023 -86.270 -76.964 3.491 1.00 0.01 C
ATOM 12 O2' A A2023 -84.881 -76.985 3.583 1.00 0.01 O
ATOM 13 C1' A A2023 -86.828 -75.774 4.211 1.00 0.01 C
ATOM 14 N9 A A2023 -86.840 -75.890 5.677 1.00 0.01 N
ATOM 15 C8 A A2023 -87.414 -76.826 6.477 1.00 0.01 C
ATOM 16 N7 A A2023 -87.246 -76.606 7.754 1.00 0.01 N
ATOM 17 C5 A A2023 -86.495 -75.457 7.846 1.00 0.01 C
ATOM 18 C6 A A2023 -85.962 -74.713 8.942 1.00 0.01 C
ATOM 19 N6 A A2023 -86.072 -74.961 10.268 1.00 0.01 N
ATOM 20 N1 A A2023 -85.268 -73.610 8.599 1.00 0.01 N
ATOM 21 C2 A A2023 -85.101 -73.302 7.309 1.00 0.01 C
ATOM 22 N3 A A2023 -85.530 -73.927 6.226 1.00 0.01 N
ATOM 23 C4 A A2023 -86.239 -75.013 6.560 1.00 0.01 C
ATOM 24 P A A2024 -85.648 -76.091 -0.205 1.00 0.01 P
ATOM 25 OP1 A A2024 -85.311 -77.486 -0.362 1.00 0.01 O
ATOM 26 OP2 A A2024 -84.662 -75.071 -0.589 1.00 0.01 O
ATOM 27 O5' A A2024 -87.024 -75.806 -0.924 1.00 0.01 O
TER
ATOM 1 O3' C B2492 -83.378 -70.954 5.444 1.00 0.01 O
ATOM 2 P U B2493 -82.916 -70.174 6.726 1.00 0.01 P
ATOM 3 OP1 U B2493 -82.316 -71.137 7.619 1.00 0.01 O
ATOM 4 OP2 U B2493 -84.041 -69.407 7.196 1.00 0.01 O
ATOM 5 O5' U B2493 -81.807 -69.235 6.140 1.00 0.01 O
ATOM 6 C5' U B2493 -80.528 -69.761 5.847 1.00 0.01 C
ATOM 7 C4' U B2493 -79.684 -68.778 5.099 1.00 0.01 C
ATOM 8 O4' U B2493 -80.392 -68.314 3.941 1.00 0.01 O
ATOM 9 C3' U B2493 -79.345 -67.513 5.829 1.00 0.01 C
ATOM 10 O3' U B2493 -78.280 -67.699 6.724 1.00 0.01 O
ATOM 11 C2' U B2493 -79.006 -66.576 4.687 1.00 0.01 C
ATOM 12 O2' U B2493 -77.698 -66.843 4.200 1.00 0.01 O
ATOM 13 C1' U B2493 -79.997 -67.012 3.630 1.00 0.01 C
ATOM 14 N1 U B2493 -81.164 -66.184 3.598 1.00 0.01 N
ATOM 15 C2 U B2493 -81.257 -65.334 2.576 1.00 0.01 C
ATOM 16 O2 U B2493 -80.358 -65.307 1.805 1.00 0.01 O
ATOM 17 N3 U B2493 -82.353 -64.538 2.529 1.00 0.01 N
ATOM 18 C4 U B2493 -83.389 -64.585 3.426 1.00 0.01 C
ATOM 19 O4 U B2493 -84.377 -63.869 3.332 1.00 0.01 O
ATOM 20 C5 U B2493 -83.223 -65.542 4.462 1.00 0.01 C
ATOM 21 C6 U B2493 -82.127 -66.298 4.511 1.00 0.01 C
ATOM 22 P C B2494 -78.476 -67.485 8.283 1.00 0.01 P
ATOM 23 OP1 C B2494 -77.266 -68.002 8.922 1.00 0.01 O
ATOM 24 OP2 C B2494 -79.758 -68.058 8.651 1.00 0.01 O
ATOM 25 O5' C B2494 -78.531 -65.913 8.418 1.00 0.01 O
TER
ATOM 2 P A A2023 -90.980 -77.735 0.198 1.00 0.01 P
ATOM 3 OP1 A A2023 -92.015 -77.815 1.230 1.00 0.01 O
ATOM 4 OP2 A A2023 -91.362 -77.245 -1.129 1.00 0.01 O
ATOM 5 O5' A A2023 -89.744 -76.915 0.732 1.00 0.01 O
ATOM 6 C5' A A2023 -89.381 -76.935 2.103 1.00 0.01 C
ATOM 7 C4' A A2023 -88.165 -76.085 2.352 1.00 0.01 C
ATOM 8 O4' A A2023 -88.135 -75.660 3.740 1.00 0.01 O
ATOM 9 C3' A A2023 -86.823 -76.753 2.079 1.00 0.01 C
ATOM 10 O3' A A2023 -85.984 -75.853 1.355 1.00 0.01 O
ATOM 11 C2' A A2023 -86.270 -76.964 3.491 1.00 0.01 C
ATOM 12 O2' A A2023 -84.881 -76.985 3.583 1.00 0.01 O
ATOM 13 C1' A A2023 -86.828 -75.774 4.211 1.00 0.01 C
ATOM 14 N9 A A2023 -86.840 -75.890 5.677 1.00 0.01 N
ATOM 15 C8 A A2023 -87.414 -76.826 6.477 1.00 0.01 C
ATOM 16 N7 A A2023 -87.246 -76.606 7.754 1.00 0.01 N
ATOM 17 C5 A A2023 -86.495 -75.457 7.846 1.00 0.01 C
ATOM 18 C6 A A2023 -85.962 -74.713 8.942 1.00 0.01 C
ATOM 19 N6 A A2023 -86.072 -74.961 10.268 1.00 0.01 N
ATOM 20 N1 A A2023 -85.268 -73.610 8.599 1.00 0.01 N
ATOM 21 C2 A A2023 -85.101 -73.302 7.309 1.00 0.01 C
ATOM 22 N3 A A2023 -85.530 -73.927 6.226 1.00 0.01 N
ATOM 23 C4 A A2023 -86.239 -75.013 6.560 1.00 0.01 C
ATOM 24 P A A2024 -85.648 -76.091 -0.205 1.00 0.01 P
ATOM 25 OP1 A A2024 -85.311 -77.486 -0.362 1.00 0.01 O
ATOM 26 OP2 A A2024 -84.662 -75.071 -0.589 1.00 0.01 O
ATOM 27 O5' A A2024 -87.024 -75.806 -0.924 1.00 0.01 O
TER
ATOM 1 O3' C B2492 -83.378 -70.954 5.444 1.00 0.01 O
ATOM 2 P U B2493 -82.916 -70.174 6.726 1.00 0.01 P
ATOM 3 OP1 U B2493 -82.316 -71.137 7.619 1.00 0.01 O
ATOM 4 OP2 U B2493 -84.041 -69.407 7.196 1.00 0.01 O
ATOM 5 O5' U B2493 -81.807 -69.235 6.140 1.00 0.01 O
ATOM 6 C5' U B2493 -80.528 -69.761 5.847 1.00 0.01 C
ATOM 7 C4' U B2493 -79.684 -68.778 5.099 1.00 0.01 C
ATOM 8 O4' U B2493 -80.392 -68.314 3.941 1.00 0.01 O
ATOM 9 C3' U B2493 -79.345 -67.513 5.829 1.00 0.01 C
ATOM 10 O3' U B2493 -78.280 -67.699 6.724 1.00 0.01 O
ATOM 11 C2' U B2493 -79.006 -66.576 4.687 1.00 0.01 C
ATOM 12 O2' U B2493 -77.698 -66.843 4.200 1.00 0.01 O
ATOM 13 C1' U B2493 -79.997 -67.012 3.630 1.00 0.01 C
ATOM 14 N1 U B2493 -81.164 -66.184 3.598 1.00 0.01 N
ATOM 15 C2 U B2493 -81.257 -65.334 2.576 1.00 0.01 C
ATOM 16 O2 U B2493 -80.358 -65.307 1.805 1.00 0.01 O
ATOM 17 N3 U B2493 -82.353 -64.538 2.529 1.00 0.01 N
ATOM 18 C4 U B2493 -83.389 -64.585 3.426 1.00 0.01 C
ATOM 19 O4 U B2493 -84.377 -63.869 3.332 1.00 0.01 O
ATOM 20 C5 U B2493 -83.223 -65.542 4.462 1.00 0.01 C
ATOM 21 C6 U B2493 -82.127 -66.298 4.511 1.00 0.01 C
ATOM 22 P C B2494 -78.476 -67.485 8.283 1.00 0.01 P
ATOM 23 OP1 C B2494 -77.266 -68.002 8.922 1.00 0.01 O
ATOM 24 OP2 C B2494 -79.758 -68.058 8.651 1.00 0.01 O
ATOM 25 O5' C B2494 -78.531 -65.913 8.418 1.00 0.01 O
TER
Atoms:
OP1: (-92.015,-77.815,1.230)
OP2: (-91.362,-77.245,-1.129)
C3': (-86.823,-76.753,2.079)
C1': (-86.828,-75.774,4.211)
C5': (-89.381,-76.935,2.103)
O4': (-88.135,-75.660,3.740)
C8: (-87.414,-76.826,6.477)
O2': (-84.881,-76.985,3.583)
C6: (-85.962,-74.713,8.942)
C5: (-86.495,-75.457,7.846)
C4: (-86.239,-75.013,6.560)
P: (-90.980,-77.735,0.198)
C4': (-88.165,-76.085,2.352)
C2': (-86.270,-76.964,3.491)
C2: (-85.101,-73.302,7.309)
N1: (-85.268,-73.610,8.599)
N3: (-85.530,-73.927,6.226)
N6: (-86.072,-74.961,10.268)
N7: (-87.246,-76.606,7.754)
N9: (-86.840,-75.890,5.677)
O5': (-89.744,-76.915,0.732)
O3': (-85.984,-75.853,1.355)
OP2: (-91.362,-77.245,-1.129)
C3': (-86.823,-76.753,2.079)
C1': (-86.828,-75.774,4.211)
C5': (-89.381,-76.935,2.103)
O4': (-88.135,-75.660,3.740)
C8: (-87.414,-76.826,6.477)
O2': (-84.881,-76.985,3.583)
C6: (-85.962,-74.713,8.942)
C5: (-86.495,-75.457,7.846)
C4: (-86.239,-75.013,6.560)
P: (-90.980,-77.735,0.198)
C4': (-88.165,-76.085,2.352)
C2': (-86.270,-76.964,3.491)
C2: (-85.101,-73.302,7.309)
N1: (-85.268,-73.610,8.599)
N3: (-85.530,-73.927,6.226)
N6: (-86.072,-74.961,10.268)
N7: (-87.246,-76.606,7.754)
N9: (-86.840,-75.890,5.677)
O5': (-89.744,-76.915,0.732)
O3': (-85.984,-75.853,1.355)
C4: (-83.389,-64.585,3.426)
N3: (-82.353,-64.538,2.529)
OP1: (-82.316,-71.137,7.619)
OP2: (-84.041,-69.407,7.196)
C2: (-81.257,-65.334,2.576)
C1': (-79.997,-67.012,3.630)
C3': (-79.345,-67.513,5.829)
O5': (-81.807,-69.235,6.140)
O4': (-80.392,-68.314,3.941)
C5': (-80.528,-69.761,5.847)
P: (-82.916,-70.174,6.726)
C4': (-79.684,-68.778,5.099)
C2': (-79.006,-66.576,4.687)
O2': (-77.698,-66.843,4.200)
N1: (-81.164,-66.184,3.598)
O4: (-84.377,-63.869,3.332)
O2: (-80.358,-65.307,1.805)
C6: (-82.127,-66.298,4.511)
C5: (-83.223,-65.542,4.462)
O3': (-78.280,-67.699,6.724)
N3: (-82.353,-64.538,2.529)
OP1: (-82.316,-71.137,7.619)
OP2: (-84.041,-69.407,7.196)
C2: (-81.257,-65.334,2.576)
C1': (-79.997,-67.012,3.630)
C3': (-79.345,-67.513,5.829)
O5': (-81.807,-69.235,6.140)
O4': (-80.392,-68.314,3.941)
C5': (-80.528,-69.761,5.847)
P: (-82.916,-70.174,6.726)
C4': (-79.684,-68.778,5.099)
C2': (-79.006,-66.576,4.687)
O2': (-77.698,-66.843,4.200)
N1: (-81.164,-66.184,3.598)
O4: (-84.377,-63.869,3.332)
O2: (-80.358,-65.307,1.805)
C6: (-82.127,-66.298,4.511)
C5: (-83.223,-65.542,4.462)
O3': (-78.280,-67.699,6.724)
Image (generated by PyMOL):