Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A653:A652
Extra
PDB:
ATOM 1 O3' U A 652 -114.098 -87.405 64.361 1.00 62.14 O
ATOM 2 P A A 653 -113.464 -88.477 63.353 1.00 89.19 P
ATOM 3 OP1 A A 653 -114.082 -88.239 62.020 1.00 89.19 O
ATOM 4 OP2 A A 653 -113.625 -89.802 63.995 1.00 89.19 O
ATOM 5 O5' A A 653 -111.919 -88.086 63.298 1.00 89.19 O
ATOM 6 C5' A A 653 -111.394 -87.363 62.189 1.00 89.19 C
ATOM 7 C4' A A 653 -110.552 -88.233 61.272 1.00 89.19 C
ATOM 8 O4' A A 653 -110.771 -87.829 59.896 1.00 89.19 O
ATOM 9 C3' A A 653 -109.040 -88.154 61.494 1.00 89.19 C
ATOM 10 O3' A A 653 -108.576 -89.186 62.335 1.00 89.19 O
ATOM 11 C2' A A 653 -108.419 -88.209 60.096 1.00 89.19 C
ATOM 12 O2' A A 653 -108.018 -89.530 59.764 1.00 89.19 O
ATOM 13 C1' A A 653 -109.562 -87.785 59.175 1.00 89.19 C
ATOM 14 N9 A A 653 -109.380 -86.417 58.631 1.00 90.73 N
ATOM 15 C8 A A 653 -109.094 -86.103 57.315 1.00 90.73 C
ATOM 16 N7 A A 653 -108.996 -84.809 57.078 1.00 90.73 N
ATOM 17 C5 A A 653 -109.241 -84.210 58.318 1.00 90.73 C
ATOM 18 C6 A A 653 -109.283 -82.853 58.732 1.00 90.73 C
ATOM 19 N6 A A 653 -109.068 -81.821 57.900 1.00 90.73 N
ATOM 20 N1 A A 653 -109.560 -82.596 60.044 1.00 90.73 N
ATOM 21 C2 A A 653 -109.774 -83.629 60.874 1.00 90.73 C
ATOM 22 N3 A A 653 -109.755 -84.939 60.604 1.00 90.73 N
ATOM 23 C4 A A 653 -109.484 -85.185 59.292 1.00 90.73 C
ATOM 24 P A A 654 -107.445 -88.898 63.432 1.00 12.10 P
ATOM 25 OP1 A A 654 -107.273 -90.161 64.206 1.00 12.10 O
ATOM 26 OP2 A A 654 -107.863 -87.648 64.175 1.00 12.10 O
ATOM 27 O5' A A 654 -106.118 -88.619 62.539 1.00 12.10 O
TER
ATOM 1 O3' U B 651 -113.054 -82.108 65.775 1.00 0.01 O
ATOM 2 P U B 652 -112.554 -83.328 64.884 1.00 62.14 P
ATOM 3 OP1 U B 652 -111.777 -84.217 65.756 1.00 62.14 O
ATOM 4 OP2 U B 652 -111.913 -82.771 63.679 1.00 62.14 O
ATOM 5 O5' U B 652 -113.908 -84.004 64.504 1.00 62.14 O
ATOM 6 C5' U B 652 -114.783 -84.450 65.515 1.00 62.14 C
ATOM 7 C4' U B 652 -115.613 -85.569 64.999 1.00 62.14 C
ATOM 8 O4' U B 652 -116.826 -85.021 64.412 1.00 62.14 O
ATOM 9 C3' U B 652 -114.952 -86.368 63.877 1.00 62.14 C
ATOM 10 O3' U B 652 -114.098 -87.405 64.361 1.00 62.14 O
ATOM 11 C2' U B 652 -116.141 -86.831 63.028 1.00 62.14 C
ATOM 12 O2' U B 652 -116.775 -87.976 63.593 1.00 62.14 O
ATOM 13 C1' U B 652 -117.083 -85.622 63.162 1.00 62.14 C
ATOM 14 N1 U B 652 -116.856 -84.586 62.093 1.00 63.62 N
ATOM 15 C2 U B 652 -117.561 -83.357 62.172 1.00 63.62 C
ATOM 16 O2 U B 652 -118.366 -83.046 63.053 1.00 63.62 O
ATOM 17 N3 U B 652 -117.295 -82.474 61.149 1.00 63.62 N
ATOM 18 C4 U B 652 -116.424 -82.665 60.090 1.00 63.62 C
ATOM 19 O4 U B 652 -116.293 -81.776 59.247 1.00 63.62 O
ATOM 20 C5 U B 652 -115.736 -83.926 60.072 1.00 63.62 C
ATOM 21 C6 U B 652 -115.969 -84.817 61.046 1.00 63.62 C
ATOM 22 P A B 653 -113.464 -88.477 63.353 1.00 89.19 P
ATOM 23 OP1 A B 653 -114.082 -88.239 62.020 1.00 89.19 O
ATOM 24 OP2 A B 653 -113.625 -89.802 63.995 1.00 89.19 O
ATOM 25 O5' A B 653 -111.919 -88.086 63.298 1.00 89.19 O
TER
ATOM 2 P A A 653 -113.464 -88.477 63.353 1.00 89.19 P
ATOM 3 OP1 A A 653 -114.082 -88.239 62.020 1.00 89.19 O
ATOM 4 OP2 A A 653 -113.625 -89.802 63.995 1.00 89.19 O
ATOM 5 O5' A A 653 -111.919 -88.086 63.298 1.00 89.19 O
ATOM 6 C5' A A 653 -111.394 -87.363 62.189 1.00 89.19 C
ATOM 7 C4' A A 653 -110.552 -88.233 61.272 1.00 89.19 C
ATOM 8 O4' A A 653 -110.771 -87.829 59.896 1.00 89.19 O
ATOM 9 C3' A A 653 -109.040 -88.154 61.494 1.00 89.19 C
ATOM 10 O3' A A 653 -108.576 -89.186 62.335 1.00 89.19 O
ATOM 11 C2' A A 653 -108.419 -88.209 60.096 1.00 89.19 C
ATOM 12 O2' A A 653 -108.018 -89.530 59.764 1.00 89.19 O
ATOM 13 C1' A A 653 -109.562 -87.785 59.175 1.00 89.19 C
ATOM 14 N9 A A 653 -109.380 -86.417 58.631 1.00 90.73 N
ATOM 15 C8 A A 653 -109.094 -86.103 57.315 1.00 90.73 C
ATOM 16 N7 A A 653 -108.996 -84.809 57.078 1.00 90.73 N
ATOM 17 C5 A A 653 -109.241 -84.210 58.318 1.00 90.73 C
ATOM 18 C6 A A 653 -109.283 -82.853 58.732 1.00 90.73 C
ATOM 19 N6 A A 653 -109.068 -81.821 57.900 1.00 90.73 N
ATOM 20 N1 A A 653 -109.560 -82.596 60.044 1.00 90.73 N
ATOM 21 C2 A A 653 -109.774 -83.629 60.874 1.00 90.73 C
ATOM 22 N3 A A 653 -109.755 -84.939 60.604 1.00 90.73 N
ATOM 23 C4 A A 653 -109.484 -85.185 59.292 1.00 90.73 C
ATOM 24 P A A 654 -107.445 -88.898 63.432 1.00 12.10 P
ATOM 25 OP1 A A 654 -107.273 -90.161 64.206 1.00 12.10 O
ATOM 26 OP2 A A 654 -107.863 -87.648 64.175 1.00 12.10 O
ATOM 27 O5' A A 654 -106.118 -88.619 62.539 1.00 12.10 O
TER
ATOM 1 O3' U B 651 -113.054 -82.108 65.775 1.00 0.01 O
ATOM 2 P U B 652 -112.554 -83.328 64.884 1.00 62.14 P
ATOM 3 OP1 U B 652 -111.777 -84.217 65.756 1.00 62.14 O
ATOM 4 OP2 U B 652 -111.913 -82.771 63.679 1.00 62.14 O
ATOM 5 O5' U B 652 -113.908 -84.004 64.504 1.00 62.14 O
ATOM 6 C5' U B 652 -114.783 -84.450 65.515 1.00 62.14 C
ATOM 7 C4' U B 652 -115.613 -85.569 64.999 1.00 62.14 C
ATOM 8 O4' U B 652 -116.826 -85.021 64.412 1.00 62.14 O
ATOM 9 C3' U B 652 -114.952 -86.368 63.877 1.00 62.14 C
ATOM 10 O3' U B 652 -114.098 -87.405 64.361 1.00 62.14 O
ATOM 11 C2' U B 652 -116.141 -86.831 63.028 1.00 62.14 C
ATOM 12 O2' U B 652 -116.775 -87.976 63.593 1.00 62.14 O
ATOM 13 C1' U B 652 -117.083 -85.622 63.162 1.00 62.14 C
ATOM 14 N1 U B 652 -116.856 -84.586 62.093 1.00 63.62 N
ATOM 15 C2 U B 652 -117.561 -83.357 62.172 1.00 63.62 C
ATOM 16 O2 U B 652 -118.366 -83.046 63.053 1.00 63.62 O
ATOM 17 N3 U B 652 -117.295 -82.474 61.149 1.00 63.62 N
ATOM 18 C4 U B 652 -116.424 -82.665 60.090 1.00 63.62 C
ATOM 19 O4 U B 652 -116.293 -81.776 59.247 1.00 63.62 O
ATOM 20 C5 U B 652 -115.736 -83.926 60.072 1.00 63.62 C
ATOM 21 C6 U B 652 -115.969 -84.817 61.046 1.00 63.62 C
ATOM 22 P A B 653 -113.464 -88.477 63.353 1.00 89.19 P
ATOM 23 OP1 A B 653 -114.082 -88.239 62.020 1.00 89.19 O
ATOM 24 OP2 A B 653 -113.625 -89.802 63.995 1.00 89.19 O
ATOM 25 O5' A B 653 -111.919 -88.086 63.298 1.00 89.19 O
TER
Atoms:
OP1: (-114.082,-88.239,62.020)
OP2: (-113.625,-89.802,63.995)
C3': (-109.040,-88.154,61.494)
C1': (-109.562,-87.785,59.175)
C5': (-111.394,-87.363,62.189)
O4': (-110.771,-87.829,59.896)
C8: (-109.094,-86.103,57.315)
O2': (-108.018,-89.530,59.764)
C6: (-109.283,-82.853,58.732)
C5: (-109.241,-84.210,58.318)
C4: (-109.484,-85.185,59.292)
P: (-113.464,-88.477,63.353)
C4': (-110.552,-88.233,61.272)
C2': (-108.419,-88.209,60.096)
C2: (-109.774,-83.629,60.874)
N1: (-109.560,-82.596,60.044)
N3: (-109.755,-84.939,60.604)
N6: (-109.068,-81.821,57.900)
N7: (-108.996,-84.809,57.078)
N9: (-109.380,-86.417,58.631)
O5': (-111.919,-88.086,63.298)
O3': (-108.576,-89.186,62.335)
OP2: (-113.625,-89.802,63.995)
C3': (-109.040,-88.154,61.494)
C1': (-109.562,-87.785,59.175)
C5': (-111.394,-87.363,62.189)
O4': (-110.771,-87.829,59.896)
C8: (-109.094,-86.103,57.315)
O2': (-108.018,-89.530,59.764)
C6: (-109.283,-82.853,58.732)
C5: (-109.241,-84.210,58.318)
C4: (-109.484,-85.185,59.292)
P: (-113.464,-88.477,63.353)
C4': (-110.552,-88.233,61.272)
C2': (-108.419,-88.209,60.096)
C2: (-109.774,-83.629,60.874)
N1: (-109.560,-82.596,60.044)
N3: (-109.755,-84.939,60.604)
N6: (-109.068,-81.821,57.900)
N7: (-108.996,-84.809,57.078)
N9: (-109.380,-86.417,58.631)
O5': (-111.919,-88.086,63.298)
O3': (-108.576,-89.186,62.335)
C4: (-116.424,-82.665,60.090)
N3: (-117.295,-82.474,61.149)
OP1: (-111.777,-84.217,65.756)
OP2: (-111.913,-82.771,63.679)
C2: (-117.561,-83.357,62.172)
C1': (-117.083,-85.622,63.162)
C3': (-114.952,-86.368,63.877)
O5': (-113.908,-84.004,64.504)
O4': (-116.826,-85.021,64.412)
C5': (-114.783,-84.450,65.515)
P: (-112.554,-83.328,64.884)
C4': (-115.613,-85.569,64.999)
C2': (-116.141,-86.831,63.028)
O2': (-116.775,-87.976,63.593)
N1: (-116.856,-84.586,62.093)
O4: (-116.293,-81.776,59.247)
O2: (-118.366,-83.046,63.053)
C6: (-115.969,-84.817,61.046)
C5: (-115.736,-83.926,60.072)
O3': (-114.098,-87.405,64.361)
N3: (-117.295,-82.474,61.149)
OP1: (-111.777,-84.217,65.756)
OP2: (-111.913,-82.771,63.679)
C2: (-117.561,-83.357,62.172)
C1': (-117.083,-85.622,63.162)
C3': (-114.952,-86.368,63.877)
O5': (-113.908,-84.004,64.504)
O4': (-116.826,-85.021,64.412)
C5': (-114.783,-84.450,65.515)
P: (-112.554,-83.328,64.884)
C4': (-115.613,-85.569,64.999)
C2': (-116.141,-86.831,63.028)
O2': (-116.775,-87.976,63.593)
N1: (-116.856,-84.586,62.093)
O4: (-116.293,-81.776,59.247)
O2: (-118.366,-83.046,63.053)
C6: (-115.969,-84.817,61.046)
C5: (-115.736,-83.926,60.072)
O3': (-114.098,-87.405,64.361)
Image (generated by PyMOL):