Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:A3:A4
Extra
PDB:
ATOM 1 O3' U A 2 19.807 -18.877 22.113 1.00 43.34 O
ATOM 2 P G A 3 19.441 -18.162 20.729 1.00 51.59 P
ATOM 3 OP1 G A 3 19.729 -19.101 19.619 1.00 49.00 O
ATOM 4 OP2 G A 3 20.047 -16.806 20.716 1.00 57.05 O
ATOM 5 O5' G A 3 17.852 -17.977 20.791 1.00 57.70 O
ATOM 6 C5' G A 3 16.982 -19.105 20.688 1.00 51.88 C
ATOM 7 C4' G A 3 15.555 -18.714 21.017 1.00 52.74 C
ATOM 8 O4' G A 3 15.461 -18.169 22.363 1.00 49.28 O
ATOM 9 C3' G A 3 14.916 -17.624 20.175 1.00 48.16 C
ATOM 10 O3' G A 3 14.526 -18.084 18.890 1.00 51.49 O
ATOM 11 C2' G A 3 13.719 -17.275 21.042 1.00 48.18 C
ATOM 12 O2' G A 3 12.721 -18.280 21.041 1.00 46.04 O
ATOM 13 C1' G A 3 14.389 -17.235 22.412 1.00 51.71 C
ATOM 14 N9 G A 3 14.919 -15.906 22.694 1.00 45.36 N
ATOM 15 C8 G A 3 16.214 -15.467 22.561 1.00 50.53 C
ATOM 16 N7 G A 3 16.364 -14.210 22.892 1.00 49.21 N
ATOM 17 C5 G A 3 15.094 -13.799 23.266 1.00 46.96 C
ATOM 18 C6 G A 3 14.633 -12.539 23.724 1.00 46.69 C
ATOM 19 O6 G A 3 15.282 -11.504 23.905 1.00 47.50 O
ATOM 20 N1 G A 3 13.260 -12.555 23.974 1.00 42.82 N
ATOM 21 C2 G A 3 12.441 -13.647 23.807 1.00 47.47 C
ATOM 22 N2 G A 3 11.138 -13.466 24.068 1.00 42.87 N
ATOM 23 N3 G A 3 12.866 -14.831 23.403 1.00 44.93 N
ATOM 24 C4 G A 3 14.190 -14.834 23.147 1.00 50.86 C
ATOM 25 P A A 4 14.307 -17.028 17.706 1.00 56.60 P
ATOM 26 OP1 A A 4 14.120 -17.836 16.474 1.00 54.03 O
ATOM 27 OP2 A A 4 15.363 -15.987 17.754 1.00 49.58 O
ATOM 28 O5' A A 4 12.938 -16.298 18.075 1.00 51.59 O
TER
ATOM 1 O3' G B 3 14.526 -18.084 18.890 1.00 51.49 O
ATOM 2 P A B 4 14.307 -17.028 17.706 1.00 56.60 P
ATOM 3 OP1 A B 4 14.120 -17.836 16.474 1.00 54.03 O
ATOM 4 OP2 A B 4 15.363 -15.987 17.754 1.00 49.58 O
ATOM 5 O5' A B 4 12.938 -16.298 18.075 1.00 51.59 O
ATOM 6 C5' A B 4 11.718 -17.013 18.147 1.00 48.39 C
ATOM 7 C4' A B 4 10.593 -16.078 18.521 1.00 46.18 C
ATOM 8 O4' A B 4 10.788 -15.551 19.864 1.00 41.28 O
ATOM 9 C3' A B 4 10.420 -14.836 17.661 1.00 46.48 C
ATOM 10 O3' A B 4 9.703 -15.164 16.478 1.00 43.29 O
ATOM 11 C2' A B 4 9.594 -13.957 18.586 1.00 45.15 C
ATOM 12 O2' A B 4 8.258 -14.401 18.669 1.00 48.16 O
ATOM 13 C1' A B 4 10.268 -14.232 19.929 1.00 46.37 C
ATOM 14 N9 A B 4 11.354 -13.307 20.261 1.00 40.41 N
ATOM 15 C8 A B 4 12.712 -13.538 20.218 1.00 50.38 C
ATOM 16 N7 A B 4 13.433 -12.521 20.626 1.00 46.63 N
ATOM 17 C5 A B 4 12.493 -11.551 20.946 1.00 43.78 C
ATOM 18 C6 A B 4 12.616 -10.244 21.445 1.00 35.96 C
ATOM 19 N6 A B 4 13.785 -9.658 21.715 1.00 44.72 N
ATOM 20 N1 A B 4 11.477 -9.546 21.663 1.00 45.59 N
ATOM 21 C2 A B 4 10.303 -10.126 21.384 1.00 36.73 C
ATOM 22 N3 A B 4 10.061 -11.340 20.906 1.00 40.23 N
ATOM 23 C4 A B 4 11.210 -12.016 20.714 1.00 44.39 C
ATOM 24 P C B 5 10.092 -14.475 15.088 1.00 50.52 P
ATOM 25 OP1 C B 5 9.314 -15.180 14.053 1.00 51.29 O
ATOM 26 OP2 C B 5 11.565 -14.372 14.947 1.00 50.98 O
ATOM 27 O5' C B 5 9.519 -12.993 15.233 1.00 50.95 O
TER
ATOM 2 P G A 3 19.441 -18.162 20.729 1.00 51.59 P
ATOM 3 OP1 G A 3 19.729 -19.101 19.619 1.00 49.00 O
ATOM 4 OP2 G A 3 20.047 -16.806 20.716 1.00 57.05 O
ATOM 5 O5' G A 3 17.852 -17.977 20.791 1.00 57.70 O
ATOM 6 C5' G A 3 16.982 -19.105 20.688 1.00 51.88 C
ATOM 7 C4' G A 3 15.555 -18.714 21.017 1.00 52.74 C
ATOM 8 O4' G A 3 15.461 -18.169 22.363 1.00 49.28 O
ATOM 9 C3' G A 3 14.916 -17.624 20.175 1.00 48.16 C
ATOM 10 O3' G A 3 14.526 -18.084 18.890 1.00 51.49 O
ATOM 11 C2' G A 3 13.719 -17.275 21.042 1.00 48.18 C
ATOM 12 O2' G A 3 12.721 -18.280 21.041 1.00 46.04 O
ATOM 13 C1' G A 3 14.389 -17.235 22.412 1.00 51.71 C
ATOM 14 N9 G A 3 14.919 -15.906 22.694 1.00 45.36 N
ATOM 15 C8 G A 3 16.214 -15.467 22.561 1.00 50.53 C
ATOM 16 N7 G A 3 16.364 -14.210 22.892 1.00 49.21 N
ATOM 17 C5 G A 3 15.094 -13.799 23.266 1.00 46.96 C
ATOM 18 C6 G A 3 14.633 -12.539 23.724 1.00 46.69 C
ATOM 19 O6 G A 3 15.282 -11.504 23.905 1.00 47.50 O
ATOM 20 N1 G A 3 13.260 -12.555 23.974 1.00 42.82 N
ATOM 21 C2 G A 3 12.441 -13.647 23.807 1.00 47.47 C
ATOM 22 N2 G A 3 11.138 -13.466 24.068 1.00 42.87 N
ATOM 23 N3 G A 3 12.866 -14.831 23.403 1.00 44.93 N
ATOM 24 C4 G A 3 14.190 -14.834 23.147 1.00 50.86 C
ATOM 25 P A A 4 14.307 -17.028 17.706 1.00 56.60 P
ATOM 26 OP1 A A 4 14.120 -17.836 16.474 1.00 54.03 O
ATOM 27 OP2 A A 4 15.363 -15.987 17.754 1.00 49.58 O
ATOM 28 O5' A A 4 12.938 -16.298 18.075 1.00 51.59 O
TER
ATOM 1 O3' G B 3 14.526 -18.084 18.890 1.00 51.49 O
ATOM 2 P A B 4 14.307 -17.028 17.706 1.00 56.60 P
ATOM 3 OP1 A B 4 14.120 -17.836 16.474 1.00 54.03 O
ATOM 4 OP2 A B 4 15.363 -15.987 17.754 1.00 49.58 O
ATOM 5 O5' A B 4 12.938 -16.298 18.075 1.00 51.59 O
ATOM 6 C5' A B 4 11.718 -17.013 18.147 1.00 48.39 C
ATOM 7 C4' A B 4 10.593 -16.078 18.521 1.00 46.18 C
ATOM 8 O4' A B 4 10.788 -15.551 19.864 1.00 41.28 O
ATOM 9 C3' A B 4 10.420 -14.836 17.661 1.00 46.48 C
ATOM 10 O3' A B 4 9.703 -15.164 16.478 1.00 43.29 O
ATOM 11 C2' A B 4 9.594 -13.957 18.586 1.00 45.15 C
ATOM 12 O2' A B 4 8.258 -14.401 18.669 1.00 48.16 O
ATOM 13 C1' A B 4 10.268 -14.232 19.929 1.00 46.37 C
ATOM 14 N9 A B 4 11.354 -13.307 20.261 1.00 40.41 N
ATOM 15 C8 A B 4 12.712 -13.538 20.218 1.00 50.38 C
ATOM 16 N7 A B 4 13.433 -12.521 20.626 1.00 46.63 N
ATOM 17 C5 A B 4 12.493 -11.551 20.946 1.00 43.78 C
ATOM 18 C6 A B 4 12.616 -10.244 21.445 1.00 35.96 C
ATOM 19 N6 A B 4 13.785 -9.658 21.715 1.00 44.72 N
ATOM 20 N1 A B 4 11.477 -9.546 21.663 1.00 45.59 N
ATOM 21 C2 A B 4 10.303 -10.126 21.384 1.00 36.73 C
ATOM 22 N3 A B 4 10.061 -11.340 20.906 1.00 40.23 N
ATOM 23 C4 A B 4 11.210 -12.016 20.714 1.00 44.39 C
ATOM 24 P C B 5 10.092 -14.475 15.088 1.00 50.52 P
ATOM 25 OP1 C B 5 9.314 -15.180 14.053 1.00 51.29 O
ATOM 26 OP2 C B 5 11.565 -14.372 14.947 1.00 50.98 O
ATOM 27 O5' C B 5 9.519 -12.993 15.233 1.00 50.95 O
TER
Atoms:
OP1: (19.729,-19.101,19.619)
OP2: (20.047,-16.806,20.716)
C3': (14.916,-17.624,20.175)
C1': (14.389,-17.235,22.412)
C5': (16.982,-19.105,20.688)
O6: (15.282,-11.504,23.905)
O4': (15.461,-18.169,22.363)
C8: (16.214,-15.467,22.561)
C2: (12.441,-13.647,23.807)
C6: (14.633,-12.539,23.724)
C5: (15.094,-13.799,23.266)
C4: (14.190,-14.834,23.147)
P: (19.441,-18.162,20.729)
C4': (15.555,-18.714,21.017)
C2': (13.719,-17.275,21.042)
O2': (12.721,-18.280,21.041)
N1: (13.260,-12.555,23.974)
N2: (11.138,-13.466,24.068)
N3: (12.866,-14.831,23.403)
N7: (16.364,-14.210,22.892)
N9: (14.919,-15.906,22.694)
O5': (17.852,-17.977,20.791)
O3': (14.526,-18.084,18.890)
OP2: (20.047,-16.806,20.716)
C3': (14.916,-17.624,20.175)
C1': (14.389,-17.235,22.412)
C5': (16.982,-19.105,20.688)
O6: (15.282,-11.504,23.905)
O4': (15.461,-18.169,22.363)
C8: (16.214,-15.467,22.561)
C2: (12.441,-13.647,23.807)
C6: (14.633,-12.539,23.724)
C5: (15.094,-13.799,23.266)
C4: (14.190,-14.834,23.147)
P: (19.441,-18.162,20.729)
C4': (15.555,-18.714,21.017)
C2': (13.719,-17.275,21.042)
O2': (12.721,-18.280,21.041)
N1: (13.260,-12.555,23.974)
N2: (11.138,-13.466,24.068)
N3: (12.866,-14.831,23.403)
N7: (16.364,-14.210,22.892)
N9: (14.919,-15.906,22.694)
O5': (17.852,-17.977,20.791)
O3': (14.526,-18.084,18.890)
OP1: (14.120,-17.836,16.474)
OP2: (15.363,-15.987,17.754)
C3': (10.420,-14.836,17.661)
C1': (10.268,-14.232,19.929)
C5': (11.718,-17.013,18.147)
O4': (10.788,-15.551,19.864)
C8: (12.712,-13.538,20.218)
O2': (8.258,-14.401,18.669)
C6: (12.616,-10.244,21.445)
C5: (12.493,-11.551,20.946)
C4: (11.210,-12.016,20.714)
P: (14.307,-17.028,17.706)
C4': (10.593,-16.078,18.521)
C2': (9.594,-13.957,18.586)
C2: (10.303,-10.126,21.384)
N1: (11.477,-9.546,21.663)
N3: (10.061,-11.340,20.906)
N6: (13.785,-9.658,21.715)
N7: (13.433,-12.521,20.626)
N9: (11.354,-13.307,20.261)
O5': (12.938,-16.298,18.075)
O3': (9.703,-15.164,16.478)
OP2: (15.363,-15.987,17.754)
C3': (10.420,-14.836,17.661)
C1': (10.268,-14.232,19.929)
C5': (11.718,-17.013,18.147)
O4': (10.788,-15.551,19.864)
C8: (12.712,-13.538,20.218)
O2': (8.258,-14.401,18.669)
C6: (12.616,-10.244,21.445)
C5: (12.493,-11.551,20.946)
C4: (11.210,-12.016,20.714)
P: (14.307,-17.028,17.706)
C4': (10.593,-16.078,18.521)
C2': (9.594,-13.957,18.586)
C2: (10.303,-10.126,21.384)
N1: (11.477,-9.546,21.663)
N3: (10.061,-11.340,20.906)
N6: (13.785,-9.658,21.715)
N7: (13.433,-12.521,20.626)
N9: (11.354,-13.307,20.261)
O5': (12.938,-16.298,18.075)
O3': (9.703,-15.164,16.478)
Image (generated by PyMOL):