Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3ND4:A6:A7
Extra
PDB:
ATOM 1 O3' A A 5 18.587 14.145 2.458 1.00 14.17 O
ATOM 2 P G A 6 18.117 13.639 1.035 1.00 16.66 P
ATOM 3 OP1 G A 6 19.355 13.388 0.255 1.00 17.78 O
ATOM 4 OP2 G A 6 17.125 14.523 0.505 1.00 16.83 O
ATOM 5 O5' G A 6 17.437 12.273 1.406 1.00 16.32 O
ATOM 6 C5' G A 6 16.474 11.725 0.600 1.00 15.03 C
ATOM 7 C4' G A 6 16.150 10.362 1.085 1.00 12.52 C
ATOM 8 O4' G A 6 15.654 10.450 2.433 1.00 12.25 O
ATOM 9 C3' G A 6 15.072 9.653 0.313 1.00 11.88 C
ATOM 10 O3' G A 6 15.596 9.029 -0.818 1.00 12.17 O
ATOM 11 C2' G A 6 14.524 8.696 1.326 1.00 10.35 C
ATOM 12 O2' G A 6 15.405 7.591 1.498 1.00 11.14 O
ATOM 13 C1' G A 6 14.570 9.556 2.585 1.00 11.53 C
ATOM 14 N9 G A 6 13.348 10.348 2.781 1.00 10.12 N
ATOM 15 C8 G A 6 13.238 11.721 2.737 1.00 10.51 C
ATOM 16 N7 G A 6 12.038 12.169 2.968 1.00 12.79 N
ATOM 17 C5 G A 6 11.316 10.993 3.228 1.00 10.36 C
ATOM 18 C6 G A 6 9.957 10.799 3.594 1.00 10.98 C
ATOM 19 O6 G A 6 9.099 11.668 3.781 1.00 12.17 O
ATOM 20 N1 G A 6 9.643 9.463 3.790 1.00 11.13 N
ATOM 21 C2 G A 6 10.531 8.423 3.632 1.00 10.39 C
ATOM 22 N2 G A 6 10.078 7.182 3.812 1.00 11.18 N
ATOM 23 N3 G A 6 11.807 8.580 3.309 1.00 8.59 N
ATOM 24 C4 G A 6 12.114 9.870 3.114 1.00 9.65 C
ATOM 25 P A A 7 14.724 8.844 -2.135 1.00 12.78 P
ATOM 26 OP1 A A 7 15.683 8.340 -3.201 1.00 14.78 O
ATOM 27 OP2 A A 7 13.966 10.095 -2.377 1.00 13.86 O
ATOM 28 O5' A A 7 13.713 7.694 -1.725 1.00 10.59 O
TER
ATOM 1 O3' G B 6 15.596 9.029 -0.818 1.00 12.17 O
ATOM 2 P A B 7 14.724 8.844 -2.135 1.00 12.78 P
ATOM 3 OP1 A B 7 15.683 8.340 -3.201 1.00 14.78 O
ATOM 4 OP2 A B 7 13.966 10.095 -2.377 1.00 13.86 O
ATOM 5 O5' A B 7 13.713 7.694 -1.725 1.00 10.59 O
ATOM 6 C5' A B 7 14.151 6.366 -1.520 1.00 14.95 C
ATOM 7 C4' A B 7 12.997 5.489 -1.098 1.00 15.39 C
ATOM 8 O4' A B 7 12.451 5.971 0.151 1.00 13.13 O
ATOM 9 C3' A B 7 11.806 5.478 -2.034 1.00 16.88 C
ATOM 10 O3' A B 7 11.998 4.625 -3.128 1.00 15.34 O
ATOM 11 C2' A B 7 10.667 5.065 -1.103 1.00 14.71 C
ATOM 12 O2' A B 7 10.730 3.666 -0.782 1.00 17.85 O
ATOM 13 C1' A B 7 11.038 5.844 0.142 1.00 15.01 C
ATOM 14 N9 A B 7 10.450 7.201 0.183 1.00 11.58 N
ATOM 15 C8 A B 7 11.049 8.393 -0.081 1.00 12.97 C
ATOM 16 N7 A B 7 10.306 9.442 0.105 1.00 11.48 N
ATOM 17 C5 A B 7 9.121 8.901 0.546 1.00 9.23 C
ATOM 18 C6 A B 7 7.913 9.494 0.954 1.00 6.77 C
ATOM 19 N6 A B 7 7.730 10.791 0.947 1.00 10.54 N
ATOM 20 N1 A B 7 6.913 8.659 1.304 1.00 10.43 N
ATOM 21 C2 A B 7 7.127 7.345 1.297 1.00 13.33 C
ATOM 22 N3 A B 7 8.219 6.663 0.971 1.00 13.33 N
ATOM 23 C4 A B 7 9.173 7.515 0.597 1.00 10.58 C
ATOM 24 P U B 8 11.463 5.022 -4.582 1.00 15.81 P
ATOM 25 OP1 U B 8 12.069 4.055 -5.538 1.00 18.55 O
ATOM 26 OP2 U B 8 11.693 6.465 -4.810 1.00 16.17 O
ATOM 27 O5' U B 8 9.912 4.764 -4.472 1.00 16.28 O
TER
ATOM 2 P G A 6 18.117 13.639 1.035 1.00 16.66 P
ATOM 3 OP1 G A 6 19.355 13.388 0.255 1.00 17.78 O
ATOM 4 OP2 G A 6 17.125 14.523 0.505 1.00 16.83 O
ATOM 5 O5' G A 6 17.437 12.273 1.406 1.00 16.32 O
ATOM 6 C5' G A 6 16.474 11.725 0.600 1.00 15.03 C
ATOM 7 C4' G A 6 16.150 10.362 1.085 1.00 12.52 C
ATOM 8 O4' G A 6 15.654 10.450 2.433 1.00 12.25 O
ATOM 9 C3' G A 6 15.072 9.653 0.313 1.00 11.88 C
ATOM 10 O3' G A 6 15.596 9.029 -0.818 1.00 12.17 O
ATOM 11 C2' G A 6 14.524 8.696 1.326 1.00 10.35 C
ATOM 12 O2' G A 6 15.405 7.591 1.498 1.00 11.14 O
ATOM 13 C1' G A 6 14.570 9.556 2.585 1.00 11.53 C
ATOM 14 N9 G A 6 13.348 10.348 2.781 1.00 10.12 N
ATOM 15 C8 G A 6 13.238 11.721 2.737 1.00 10.51 C
ATOM 16 N7 G A 6 12.038 12.169 2.968 1.00 12.79 N
ATOM 17 C5 G A 6 11.316 10.993 3.228 1.00 10.36 C
ATOM 18 C6 G A 6 9.957 10.799 3.594 1.00 10.98 C
ATOM 19 O6 G A 6 9.099 11.668 3.781 1.00 12.17 O
ATOM 20 N1 G A 6 9.643 9.463 3.790 1.00 11.13 N
ATOM 21 C2 G A 6 10.531 8.423 3.632 1.00 10.39 C
ATOM 22 N2 G A 6 10.078 7.182 3.812 1.00 11.18 N
ATOM 23 N3 G A 6 11.807 8.580 3.309 1.00 8.59 N
ATOM 24 C4 G A 6 12.114 9.870 3.114 1.00 9.65 C
ATOM 25 P A A 7 14.724 8.844 -2.135 1.00 12.78 P
ATOM 26 OP1 A A 7 15.683 8.340 -3.201 1.00 14.78 O
ATOM 27 OP2 A A 7 13.966 10.095 -2.377 1.00 13.86 O
ATOM 28 O5' A A 7 13.713 7.694 -1.725 1.00 10.59 O
TER
ATOM 1 O3' G B 6 15.596 9.029 -0.818 1.00 12.17 O
ATOM 2 P A B 7 14.724 8.844 -2.135 1.00 12.78 P
ATOM 3 OP1 A B 7 15.683 8.340 -3.201 1.00 14.78 O
ATOM 4 OP2 A B 7 13.966 10.095 -2.377 1.00 13.86 O
ATOM 5 O5' A B 7 13.713 7.694 -1.725 1.00 10.59 O
ATOM 6 C5' A B 7 14.151 6.366 -1.520 1.00 14.95 C
ATOM 7 C4' A B 7 12.997 5.489 -1.098 1.00 15.39 C
ATOM 8 O4' A B 7 12.451 5.971 0.151 1.00 13.13 O
ATOM 9 C3' A B 7 11.806 5.478 -2.034 1.00 16.88 C
ATOM 10 O3' A B 7 11.998 4.625 -3.128 1.00 15.34 O
ATOM 11 C2' A B 7 10.667 5.065 -1.103 1.00 14.71 C
ATOM 12 O2' A B 7 10.730 3.666 -0.782 1.00 17.85 O
ATOM 13 C1' A B 7 11.038 5.844 0.142 1.00 15.01 C
ATOM 14 N9 A B 7 10.450 7.201 0.183 1.00 11.58 N
ATOM 15 C8 A B 7 11.049 8.393 -0.081 1.00 12.97 C
ATOM 16 N7 A B 7 10.306 9.442 0.105 1.00 11.48 N
ATOM 17 C5 A B 7 9.121 8.901 0.546 1.00 9.23 C
ATOM 18 C6 A B 7 7.913 9.494 0.954 1.00 6.77 C
ATOM 19 N6 A B 7 7.730 10.791 0.947 1.00 10.54 N
ATOM 20 N1 A B 7 6.913 8.659 1.304 1.00 10.43 N
ATOM 21 C2 A B 7 7.127 7.345 1.297 1.00 13.33 C
ATOM 22 N3 A B 7 8.219 6.663 0.971 1.00 13.33 N
ATOM 23 C4 A B 7 9.173 7.515 0.597 1.00 10.58 C
ATOM 24 P U B 8 11.463 5.022 -4.582 1.00 15.81 P
ATOM 25 OP1 U B 8 12.069 4.055 -5.538 1.00 18.55 O
ATOM 26 OP2 U B 8 11.693 6.465 -4.810 1.00 16.17 O
ATOM 27 O5' U B 8 9.912 4.764 -4.472 1.00 16.28 O
TER
Atoms:
OP1: (19.355,13.388,0.255)
OP2: (17.125,14.523,0.505)
C3': (15.072,9.653,0.313)
C1': (14.570,9.556,2.585)
C5': (16.474,11.725,0.600)
O6: (9.099,11.668,3.781)
O4': (15.654,10.450,2.433)
C8: (13.238,11.721,2.737)
C2: (10.531,8.423,3.632)
C6: (9.957,10.799,3.594)
C5: (11.316,10.993,3.228)
C4: (12.114,9.870,3.114)
P: (18.117,13.639,1.035)
C4': (16.150,10.362,1.085)
C2': (14.524,8.696,1.326)
O2': (15.405,7.591,1.498)
N1: (9.643,9.463,3.790)
N2: (10.078,7.182,3.812)
N3: (11.807,8.580,3.309)
N7: (12.038,12.169,2.968)
N9: (13.348,10.348,2.781)
O5': (17.437,12.273,1.406)
O3': (15.596,9.029,-0.818)
OP2: (17.125,14.523,0.505)
C3': (15.072,9.653,0.313)
C1': (14.570,9.556,2.585)
C5': (16.474,11.725,0.600)
O6: (9.099,11.668,3.781)
O4': (15.654,10.450,2.433)
C8: (13.238,11.721,2.737)
C2: (10.531,8.423,3.632)
C6: (9.957,10.799,3.594)
C5: (11.316,10.993,3.228)
C4: (12.114,9.870,3.114)
P: (18.117,13.639,1.035)
C4': (16.150,10.362,1.085)
C2': (14.524,8.696,1.326)
O2': (15.405,7.591,1.498)
N1: (9.643,9.463,3.790)
N2: (10.078,7.182,3.812)
N3: (11.807,8.580,3.309)
N7: (12.038,12.169,2.968)
N9: (13.348,10.348,2.781)
O5': (17.437,12.273,1.406)
O3': (15.596,9.029,-0.818)
OP1: (15.683,8.340,-3.201)
OP2: (13.966,10.095,-2.377)
C3': (11.806,5.478,-2.034)
C1': (11.038,5.844,0.142)
C5': (14.151,6.366,-1.520)
O4': (12.451,5.971,0.151)
C8: (11.049,8.393,-0.081)
O2': (10.730,3.666,-0.782)
C6: (7.913,9.494,0.954)
C5: (9.121,8.901,0.546)
C4: (9.173,7.515,0.597)
P: (14.724,8.844,-2.135)
C4': (12.997,5.489,-1.098)
C2': (10.667,5.065,-1.103)
C2: (7.127,7.345,1.297)
N1: (6.913,8.659,1.304)
N3: (8.219,6.663,0.971)
N6: (7.730,10.791,0.947)
N7: (10.306,9.442,0.105)
N9: (10.450,7.201,0.183)
O5': (13.713,7.694,-1.725)
O3': (11.998,4.625,-3.128)
OP2: (13.966,10.095,-2.377)
C3': (11.806,5.478,-2.034)
C1': (11.038,5.844,0.142)
C5': (14.151,6.366,-1.520)
O4': (12.451,5.971,0.151)
C8: (11.049,8.393,-0.081)
O2': (10.730,3.666,-0.782)
C6: (7.913,9.494,0.954)
C5: (9.121,8.901,0.546)
C4: (9.173,7.515,0.597)
P: (14.724,8.844,-2.135)
C4': (12.997,5.489,-1.098)
C2': (10.667,5.065,-1.103)
C2: (7.127,7.345,1.297)
N1: (6.913,8.659,1.304)
N3: (8.219,6.663,0.971)
N6: (7.730,10.791,0.947)
N7: (10.306,9.442,0.105)
N9: (10.450,7.201,0.183)
O5': (13.713,7.694,-1.725)
O3': (11.998,4.625,-3.128)
Image (generated by PyMOL):