Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1J1U:B21:B13
Extra
PDB:
ATOM 1 O3' U A 20 -16.926 36.907 98.118 1.00 98.61 O
ATOM 2 P A A 21 -16.320 37.195 99.582 1.00 90.13 P
ATOM 3 OP1 A A 21 -17.467 37.244 100.548 1.00 98.90 O
ATOM 4 OP2 A A 21 -15.348 38.325 99.515 1.00 90.30 O
ATOM 5 O5' A A 21 -15.395 35.936 99.823 1.00 89.86 O
ATOM 6 C5' A A 21 -14.435 35.634 98.839 1.00 90.58 C
ATOM 7 C4' A A 21 -14.030 34.185 98.876 1.00 86.74 C
ATOM 8 O4' A A 21 -13.170 33.971 97.725 1.00 85.38 O
ATOM 9 C3' A A 21 -13.188 33.820 100.095 1.00 85.75 C
ATOM 10 O3' A A 21 -14.028 33.173 101.050 1.00 90.47 O
ATOM 11 C2' A A 21 -12.108 32.943 99.481 1.00 81.90 C
ATOM 12 O2' A A 21 -12.602 31.682 99.071 1.00 84.90 O
ATOM 13 C1' A A 21 -11.866 33.702 98.181 1.00 74.31 C
ATOM 14 N9 A A 21 -11.139 34.982 98.274 1.00 54.86 N
ATOM 15 C8 A A 21 -11.322 36.132 99.020 1.00 48.01 C
ATOM 16 N7 A A 21 -10.461 37.079 98.731 1.00 42.87 N
ATOM 17 C5 A A 21 -9.659 36.505 97.750 1.00 38.76 C
ATOM 18 C6 A A 21 -8.562 36.964 96.989 1.00 42.98 C
ATOM 19 N6 A A 21 -8.009 38.180 97.057 1.00 36.32 N
ATOM 20 N1 A A 21 -8.023 36.096 96.113 1.00 38.35 N
ATOM 21 C2 A A 21 -8.525 34.891 96.022 1.00 35.00 C
ATOM 22 N3 A A 21 -9.510 34.358 96.652 1.00 40.12 N
ATOM 23 C4 A A 21 -10.051 35.217 97.500 1.00 39.50 C
ATOM 24 P G A 22 -13.408 32.556 102.399 1.00 83.62 P
ATOM 25 OP1 G A 22 -14.508 32.424 103.373 1.00 91.28 O
ATOM 26 OP2 G A 22 -12.193 33.314 102.793 1.00 93.75 O
ATOM 27 O5' G A 22 -12.977 31.104 101.925 1.00 78.84 O
TER
ATOM 1 O3' C B 12 -4.431 24.765 89.823 1.00 74.80 O
ATOM 2 P A B 13 -5.717 25.248 89.004 1.00 80.47 P
ATOM 3 OP1 A B 13 -6.018 24.121 88.071 1.00 82.06 O
ATOM 4 OP2 A B 13 -5.431 26.615 88.457 1.00 73.68 O
ATOM 5 O5' A B 13 -6.873 25.312 90.101 1.00 66.45 O
ATOM 6 C5' A B 13 -7.119 24.185 90.922 1.00 67.51 C
ATOM 7 C4' A B 13 -8.282 24.420 91.845 1.00 58.91 C
ATOM 8 O4' A B 13 -7.928 25.236 92.977 1.00 66.18 O
ATOM 9 C3' A B 13 -9.478 25.141 91.296 1.00 64.12 C
ATOM 10 O3' A B 13 -10.226 24.310 90.431 1.00 66.22 O
ATOM 11 C2' A B 13 -10.253 25.435 92.569 1.00 65.59 C
ATOM 12 O2' A B 13 -10.981 24.307 92.999 1.00 61.59 O
ATOM 13 C1' A B 13 -9.120 25.773 93.547 1.00 64.76 C
ATOM 14 N9 A B 13 -8.935 27.220 93.789 1.00 60.43 N
ATOM 15 C8 A B 13 -8.029 28.078 93.214 1.00 54.00 C
ATOM 16 N7 A B 13 -8.102 29.312 93.666 1.00 51.99 N
ATOM 17 C5 A B 13 -9.136 29.269 94.590 1.00 48.17 C
ATOM 18 C6 A B 13 -9.739 30.272 95.412 1.00 43.19 C
ATOM 19 N6 A B 13 -9.420 31.578 95.387 1.00 44.42 N
ATOM 20 N1 A B 13 -10.707 29.887 96.242 1.00 42.63 N
ATOM 21 C2 A B 13 -11.103 28.599 96.209 1.00 53.00 C
ATOM 22 N3 A B 13 -10.659 27.585 95.459 1.00 57.06 N
ATOM 23 C4 A B 13 -9.657 27.986 94.673 1.00 55.08 C
ATOM 24 P G B 14 -11.363 24.961 89.525 1.00 66.30 P
ATOM 25 OP1 G B 14 -11.998 23.910 88.679 1.00 78.07 O
ATOM 26 OP2 G B 14 -10.821 26.175 88.881 1.00 68.30 O
ATOM 27 O5' G B 14 -12.404 25.379 90.631 1.00 66.36 O
TER
ATOM 2 P A A 21 -16.320 37.195 99.582 1.00 90.13 P
ATOM 3 OP1 A A 21 -17.467 37.244 100.548 1.00 98.90 O
ATOM 4 OP2 A A 21 -15.348 38.325 99.515 1.00 90.30 O
ATOM 5 O5' A A 21 -15.395 35.936 99.823 1.00 89.86 O
ATOM 6 C5' A A 21 -14.435 35.634 98.839 1.00 90.58 C
ATOM 7 C4' A A 21 -14.030 34.185 98.876 1.00 86.74 C
ATOM 8 O4' A A 21 -13.170 33.971 97.725 1.00 85.38 O
ATOM 9 C3' A A 21 -13.188 33.820 100.095 1.00 85.75 C
ATOM 10 O3' A A 21 -14.028 33.173 101.050 1.00 90.47 O
ATOM 11 C2' A A 21 -12.108 32.943 99.481 1.00 81.90 C
ATOM 12 O2' A A 21 -12.602 31.682 99.071 1.00 84.90 O
ATOM 13 C1' A A 21 -11.866 33.702 98.181 1.00 74.31 C
ATOM 14 N9 A A 21 -11.139 34.982 98.274 1.00 54.86 N
ATOM 15 C8 A A 21 -11.322 36.132 99.020 1.00 48.01 C
ATOM 16 N7 A A 21 -10.461 37.079 98.731 1.00 42.87 N
ATOM 17 C5 A A 21 -9.659 36.505 97.750 1.00 38.76 C
ATOM 18 C6 A A 21 -8.562 36.964 96.989 1.00 42.98 C
ATOM 19 N6 A A 21 -8.009 38.180 97.057 1.00 36.32 N
ATOM 20 N1 A A 21 -8.023 36.096 96.113 1.00 38.35 N
ATOM 21 C2 A A 21 -8.525 34.891 96.022 1.00 35.00 C
ATOM 22 N3 A A 21 -9.510 34.358 96.652 1.00 40.12 N
ATOM 23 C4 A A 21 -10.051 35.217 97.500 1.00 39.50 C
ATOM 24 P G A 22 -13.408 32.556 102.399 1.00 83.62 P
ATOM 25 OP1 G A 22 -14.508 32.424 103.373 1.00 91.28 O
ATOM 26 OP2 G A 22 -12.193 33.314 102.793 1.00 93.75 O
ATOM 27 O5' G A 22 -12.977 31.104 101.925 1.00 78.84 O
TER
ATOM 1 O3' C B 12 -4.431 24.765 89.823 1.00 74.80 O
ATOM 2 P A B 13 -5.717 25.248 89.004 1.00 80.47 P
ATOM 3 OP1 A B 13 -6.018 24.121 88.071 1.00 82.06 O
ATOM 4 OP2 A B 13 -5.431 26.615 88.457 1.00 73.68 O
ATOM 5 O5' A B 13 -6.873 25.312 90.101 1.00 66.45 O
ATOM 6 C5' A B 13 -7.119 24.185 90.922 1.00 67.51 C
ATOM 7 C4' A B 13 -8.282 24.420 91.845 1.00 58.91 C
ATOM 8 O4' A B 13 -7.928 25.236 92.977 1.00 66.18 O
ATOM 9 C3' A B 13 -9.478 25.141 91.296 1.00 64.12 C
ATOM 10 O3' A B 13 -10.226 24.310 90.431 1.00 66.22 O
ATOM 11 C2' A B 13 -10.253 25.435 92.569 1.00 65.59 C
ATOM 12 O2' A B 13 -10.981 24.307 92.999 1.00 61.59 O
ATOM 13 C1' A B 13 -9.120 25.773 93.547 1.00 64.76 C
ATOM 14 N9 A B 13 -8.935 27.220 93.789 1.00 60.43 N
ATOM 15 C8 A B 13 -8.029 28.078 93.214 1.00 54.00 C
ATOM 16 N7 A B 13 -8.102 29.312 93.666 1.00 51.99 N
ATOM 17 C5 A B 13 -9.136 29.269 94.590 1.00 48.17 C
ATOM 18 C6 A B 13 -9.739 30.272 95.412 1.00 43.19 C
ATOM 19 N6 A B 13 -9.420 31.578 95.387 1.00 44.42 N
ATOM 20 N1 A B 13 -10.707 29.887 96.242 1.00 42.63 N
ATOM 21 C2 A B 13 -11.103 28.599 96.209 1.00 53.00 C
ATOM 22 N3 A B 13 -10.659 27.585 95.459 1.00 57.06 N
ATOM 23 C4 A B 13 -9.657 27.986 94.673 1.00 55.08 C
ATOM 24 P G B 14 -11.363 24.961 89.525 1.00 66.30 P
ATOM 25 OP1 G B 14 -11.998 23.910 88.679 1.00 78.07 O
ATOM 26 OP2 G B 14 -10.821 26.175 88.881 1.00 68.30 O
ATOM 27 O5' G B 14 -12.404 25.379 90.631 1.00 66.36 O
TER
Atoms:
OP1: (-17.467,37.244,100.548)
OP2: (-15.348,38.325,99.515)
C3': (-13.188,33.820,100.095)
C1': (-11.866,33.702,98.181)
C5': (-14.435,35.634,98.839)
O4': (-13.170,33.971,97.725)
C8: (-11.322,36.132,99.020)
O2': (-12.602,31.682,99.071)
C6: (-8.562,36.964,96.989)
C5: (-9.659,36.505,97.750)
C4: (-10.051,35.217,97.500)
P: (-16.320,37.195,99.582)
C4': (-14.030,34.185,98.876)
C2': (-12.108,32.943,99.481)
C2: (-8.525,34.891,96.022)
N1: (-8.023,36.096,96.113)
N3: (-9.510,34.358,96.652)
N6: (-8.009,38.180,97.057)
N7: (-10.461,37.079,98.731)
N9: (-11.139,34.982,98.274)
O5': (-15.395,35.936,99.823)
O3': (-14.028,33.173,101.050)
OP2: (-15.348,38.325,99.515)
C3': (-13.188,33.820,100.095)
C1': (-11.866,33.702,98.181)
C5': (-14.435,35.634,98.839)
O4': (-13.170,33.971,97.725)
C8: (-11.322,36.132,99.020)
O2': (-12.602,31.682,99.071)
C6: (-8.562,36.964,96.989)
C5: (-9.659,36.505,97.750)
C4: (-10.051,35.217,97.500)
P: (-16.320,37.195,99.582)
C4': (-14.030,34.185,98.876)
C2': (-12.108,32.943,99.481)
C2: (-8.525,34.891,96.022)
N1: (-8.023,36.096,96.113)
N3: (-9.510,34.358,96.652)
N6: (-8.009,38.180,97.057)
N7: (-10.461,37.079,98.731)
N9: (-11.139,34.982,98.274)
O5': (-15.395,35.936,99.823)
O3': (-14.028,33.173,101.050)
OP1: (-6.018,24.121,88.071)
OP2: (-5.431,26.615,88.457)
C3': (-9.478,25.141,91.296)
C1': (-9.120,25.773,93.547)
C5': (-7.119,24.185,90.922)
O4': (-7.928,25.236,92.977)
C8: (-8.029,28.078,93.214)
O2': (-10.981,24.307,92.999)
C6: (-9.739,30.272,95.412)
C5: (-9.136,29.269,94.590)
C4: (-9.657,27.986,94.673)
P: (-5.717,25.248,89.004)
C4': (-8.282,24.420,91.845)
C2': (-10.253,25.435,92.569)
C2: (-11.103,28.599,96.209)
N1: (-10.707,29.887,96.242)
N3: (-10.659,27.585,95.459)
N6: (-9.420,31.578,95.387)
N7: (-8.102,29.312,93.666)
N9: (-8.935,27.220,93.789)
O5': (-6.873,25.312,90.101)
O3': (-10.226,24.310,90.431)
OP2: (-5.431,26.615,88.457)
C3': (-9.478,25.141,91.296)
C1': (-9.120,25.773,93.547)
C5': (-7.119,24.185,90.922)
O4': (-7.928,25.236,92.977)
C8: (-8.029,28.078,93.214)
O2': (-10.981,24.307,92.999)
C6: (-9.739,30.272,95.412)
C5: (-9.136,29.269,94.590)
C4: (-9.657,27.986,94.673)
P: (-5.717,25.248,89.004)
C4': (-8.282,24.420,91.845)
C2': (-10.253,25.435,92.569)
C2: (-11.103,28.599,96.209)
N1: (-10.707,29.887,96.242)
N3: (-10.659,27.585,95.459)
N6: (-9.420,31.578,95.387)
N7: (-8.102,29.312,93.666)
N9: (-8.935,27.220,93.789)
O5': (-6.873,25.312,90.101)
O3': (-10.226,24.310,90.431)
Image (generated by PyMOL):