Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1MJI:D13:D20
Extra
PDB:
ATOM 1 O3' C A 12 5.096 -17.842 26.395 1.00 33.23 O
ATOM 2 P A A 13 5.982 -18.344 27.647 1.00 32.22 P
ATOM 3 OP1 A A 13 6.957 -19.360 27.181 1.00 33.29 O
ATOM 4 OP2 A A 13 5.071 -18.663 28.777 1.00 31.95 O
ATOM 5 O5' A A 13 6.811 -17.054 28.080 1.00 32.17 O
ATOM 6 C5' A A 13 7.623 -16.344 27.149 1.00 26.54 C
ATOM 7 C4' A A 13 8.026 -15.004 27.725 1.00 24.77 C
ATOM 8 O4' A A 13 6.834 -14.218 28.000 1.00 23.55 O
ATOM 9 C3' A A 13 8.756 -15.017 29.060 1.00 23.02 C
ATOM 10 O3' A A 13 10.149 -15.252 28.864 1.00 22.72 O
ATOM 11 C2' A A 13 8.524 -13.590 29.532 1.00 22.86 C
ATOM 12 O2' A A 13 9.331 -12.705 28.775 1.00 24.10 O
ATOM 13 C1' A A 13 7.075 -13.365 29.106 1.00 21.95 C
ATOM 14 N9 A A 13 6.052 -13.613 30.125 1.00 20.62 N
ATOM 15 C8 A A 13 5.231 -14.711 30.239 1.00 18.72 C
ATOM 16 N7 A A 13 4.366 -14.626 31.219 1.00 18.44 N
ATOM 17 C5 A A 13 4.640 -13.398 31.806 1.00 18.86 C
ATOM 18 C6 A A 13 4.061 -12.715 32.905 1.00 18.97 C
ATOM 19 N6 A A 13 3.049 -13.205 33.626 1.00 18.29 N
ATOM 20 N1 A A 13 4.566 -11.498 33.234 1.00 18.71 N
ATOM 21 C2 A A 13 5.579 -11.011 32.502 1.00 20.83 C
ATOM 22 N3 A A 13 6.208 -11.557 31.447 1.00 21.91 N
ATOM 23 C4 A A 13 5.684 -12.765 31.148 1.00 20.50 C
ATOM 24 P U A 14 11.048 -15.835 30.071 1.00 21.72 P
ATOM 25 OP1 U A 14 12.205 -16.546 29.470 1.00 22.92 O
ATOM 26 OP2 U A 14 10.162 -16.539 31.023 1.00 18.96 O
ATOM 27 O5' U A 14 11.637 -14.562 30.827 1.00 22.04 O
TER
ATOM 1 O3' A B 19 10.346 -1.087 29.140 1.00 17.27 O
ATOM 2 P A B 20 9.579 -1.656 27.853 1.00 17.96 P
ATOM 3 OP1 A B 20 9.663 -0.644 26.771 1.00 18.68 O
ATOM 4 OP2 A B 20 8.267 -2.161 28.287 1.00 18.82 O
ATOM 5 O5' A B 20 10.424 -2.925 27.407 1.00 17.09 O
ATOM 6 C5' A B 20 11.508 -2.811 26.498 1.00 14.46 C
ATOM 7 C4' A B 20 12.039 -4.185 26.192 1.00 14.21 C
ATOM 8 O4' A B 20 12.233 -4.867 27.462 1.00 14.48 O
ATOM 9 C3' A B 20 11.080 -5.105 25.449 1.00 14.06 C
ATOM 10 O3' A B 20 11.170 -4.918 24.044 1.00 16.82 O
ATOM 11 C2' A B 20 11.577 -6.487 25.853 1.00 13.01 C
ATOM 12 O2' A B 20 12.701 -6.924 25.124 1.00 13.39 O
ATOM 13 C1' A B 20 11.960 -6.247 27.310 1.00 11.31 C
ATOM 14 N9 A B 20 10.879 -6.607 28.222 1.00 11.67 N
ATOM 15 C8 A B 20 10.043 -5.796 28.955 1.00 8.67 C
ATOM 16 N7 A B 20 9.180 -6.455 29.685 1.00 7.82 N
ATOM 17 C5 A B 20 9.465 -7.790 29.414 1.00 10.15 C
ATOM 18 C6 A B 20 8.904 -8.994 29.874 1.00 8.84 C
ATOM 19 N6 A B 20 7.907 -9.053 30.755 1.00 7.20 N
ATOM 20 N1 A B 20 9.414 -10.152 29.393 1.00 10.11 N
ATOM 21 C2 A B 20 10.429 -10.095 28.518 1.00 10.18 C
ATOM 22 N3 A B 20 11.044 -9.031 28.016 1.00 11.25 N
ATOM 23 C4 A B 20 10.505 -7.895 28.511 1.00 11.76 C
ATOM 24 P C B 21 9.839 -4.955 23.149 1.00 17.60 P
ATOM 25 OP1 C B 21 10.224 -4.618 21.746 1.00 18.39 O
ATOM 26 OP2 C B 21 8.815 -4.144 23.844 1.00 17.51 O
ATOM 27 O5' C B 21 9.382 -6.481 23.206 1.00 20.02 O
TER
ATOM 2 P A A 13 5.982 -18.344 27.647 1.00 32.22 P
ATOM 3 OP1 A A 13 6.957 -19.360 27.181 1.00 33.29 O
ATOM 4 OP2 A A 13 5.071 -18.663 28.777 1.00 31.95 O
ATOM 5 O5' A A 13 6.811 -17.054 28.080 1.00 32.17 O
ATOM 6 C5' A A 13 7.623 -16.344 27.149 1.00 26.54 C
ATOM 7 C4' A A 13 8.026 -15.004 27.725 1.00 24.77 C
ATOM 8 O4' A A 13 6.834 -14.218 28.000 1.00 23.55 O
ATOM 9 C3' A A 13 8.756 -15.017 29.060 1.00 23.02 C
ATOM 10 O3' A A 13 10.149 -15.252 28.864 1.00 22.72 O
ATOM 11 C2' A A 13 8.524 -13.590 29.532 1.00 22.86 C
ATOM 12 O2' A A 13 9.331 -12.705 28.775 1.00 24.10 O
ATOM 13 C1' A A 13 7.075 -13.365 29.106 1.00 21.95 C
ATOM 14 N9 A A 13 6.052 -13.613 30.125 1.00 20.62 N
ATOM 15 C8 A A 13 5.231 -14.711 30.239 1.00 18.72 C
ATOM 16 N7 A A 13 4.366 -14.626 31.219 1.00 18.44 N
ATOM 17 C5 A A 13 4.640 -13.398 31.806 1.00 18.86 C
ATOM 18 C6 A A 13 4.061 -12.715 32.905 1.00 18.97 C
ATOM 19 N6 A A 13 3.049 -13.205 33.626 1.00 18.29 N
ATOM 20 N1 A A 13 4.566 -11.498 33.234 1.00 18.71 N
ATOM 21 C2 A A 13 5.579 -11.011 32.502 1.00 20.83 C
ATOM 22 N3 A A 13 6.208 -11.557 31.447 1.00 21.91 N
ATOM 23 C4 A A 13 5.684 -12.765 31.148 1.00 20.50 C
ATOM 24 P U A 14 11.048 -15.835 30.071 1.00 21.72 P
ATOM 25 OP1 U A 14 12.205 -16.546 29.470 1.00 22.92 O
ATOM 26 OP2 U A 14 10.162 -16.539 31.023 1.00 18.96 O
ATOM 27 O5' U A 14 11.637 -14.562 30.827 1.00 22.04 O
TER
ATOM 1 O3' A B 19 10.346 -1.087 29.140 1.00 17.27 O
ATOM 2 P A B 20 9.579 -1.656 27.853 1.00 17.96 P
ATOM 3 OP1 A B 20 9.663 -0.644 26.771 1.00 18.68 O
ATOM 4 OP2 A B 20 8.267 -2.161 28.287 1.00 18.82 O
ATOM 5 O5' A B 20 10.424 -2.925 27.407 1.00 17.09 O
ATOM 6 C5' A B 20 11.508 -2.811 26.498 1.00 14.46 C
ATOM 7 C4' A B 20 12.039 -4.185 26.192 1.00 14.21 C
ATOM 8 O4' A B 20 12.233 -4.867 27.462 1.00 14.48 O
ATOM 9 C3' A B 20 11.080 -5.105 25.449 1.00 14.06 C
ATOM 10 O3' A B 20 11.170 -4.918 24.044 1.00 16.82 O
ATOM 11 C2' A B 20 11.577 -6.487 25.853 1.00 13.01 C
ATOM 12 O2' A B 20 12.701 -6.924 25.124 1.00 13.39 O
ATOM 13 C1' A B 20 11.960 -6.247 27.310 1.00 11.31 C
ATOM 14 N9 A B 20 10.879 -6.607 28.222 1.00 11.67 N
ATOM 15 C8 A B 20 10.043 -5.796 28.955 1.00 8.67 C
ATOM 16 N7 A B 20 9.180 -6.455 29.685 1.00 7.82 N
ATOM 17 C5 A B 20 9.465 -7.790 29.414 1.00 10.15 C
ATOM 18 C6 A B 20 8.904 -8.994 29.874 1.00 8.84 C
ATOM 19 N6 A B 20 7.907 -9.053 30.755 1.00 7.20 N
ATOM 20 N1 A B 20 9.414 -10.152 29.393 1.00 10.11 N
ATOM 21 C2 A B 20 10.429 -10.095 28.518 1.00 10.18 C
ATOM 22 N3 A B 20 11.044 -9.031 28.016 1.00 11.25 N
ATOM 23 C4 A B 20 10.505 -7.895 28.511 1.00 11.76 C
ATOM 24 P C B 21 9.839 -4.955 23.149 1.00 17.60 P
ATOM 25 OP1 C B 21 10.224 -4.618 21.746 1.00 18.39 O
ATOM 26 OP2 C B 21 8.815 -4.144 23.844 1.00 17.51 O
ATOM 27 O5' C B 21 9.382 -6.481 23.206 1.00 20.02 O
TER
Atoms:
OP1: (6.957,-19.360,27.181)
OP2: (5.071,-18.663,28.777)
C3': (8.756,-15.017,29.060)
C1': (7.075,-13.365,29.106)
C5': (7.623,-16.344,27.149)
O4': (6.834,-14.218,28.000)
C8: (5.231,-14.711,30.239)
O2': (9.331,-12.705,28.775)
C6: (4.061,-12.715,32.905)
C5: (4.640,-13.398,31.806)
C4: (5.684,-12.765,31.148)
P: (5.982,-18.344,27.647)
C4': (8.026,-15.004,27.725)
C2': (8.524,-13.590,29.532)
C2: (5.579,-11.011,32.502)
N1: (4.566,-11.498,33.234)
N3: (6.208,-11.557,31.447)
N6: (3.049,-13.205,33.626)
N7: (4.366,-14.626,31.219)
N9: (6.052,-13.613,30.125)
O5': (6.811,-17.054,28.080)
O3': (10.149,-15.252,28.864)
OP2: (5.071,-18.663,28.777)
C3': (8.756,-15.017,29.060)
C1': (7.075,-13.365,29.106)
C5': (7.623,-16.344,27.149)
O4': (6.834,-14.218,28.000)
C8: (5.231,-14.711,30.239)
O2': (9.331,-12.705,28.775)
C6: (4.061,-12.715,32.905)
C5: (4.640,-13.398,31.806)
C4: (5.684,-12.765,31.148)
P: (5.982,-18.344,27.647)
C4': (8.026,-15.004,27.725)
C2': (8.524,-13.590,29.532)
C2: (5.579,-11.011,32.502)
N1: (4.566,-11.498,33.234)
N3: (6.208,-11.557,31.447)
N6: (3.049,-13.205,33.626)
N7: (4.366,-14.626,31.219)
N9: (6.052,-13.613,30.125)
O5': (6.811,-17.054,28.080)
O3': (10.149,-15.252,28.864)
OP1: (9.663,-0.644,26.771)
OP2: (8.267,-2.161,28.287)
C3': (11.080,-5.105,25.449)
C1': (11.960,-6.247,27.310)
C5': (11.508,-2.811,26.498)
O4': (12.233,-4.867,27.462)
C8: (10.043,-5.796,28.955)
O2': (12.701,-6.924,25.124)
C6: (8.904,-8.994,29.874)
C5: (9.465,-7.790,29.414)
C4: (10.505,-7.895,28.511)
P: (9.579,-1.656,27.853)
C4': (12.039,-4.185,26.192)
C2': (11.577,-6.487,25.853)
C2: (10.429,-10.095,28.518)
N1: (9.414,-10.152,29.393)
N3: (11.044,-9.031,28.016)
N6: (7.907,-9.053,30.755)
N7: (9.180,-6.455,29.685)
N9: (10.879,-6.607,28.222)
O5': (10.424,-2.925,27.407)
O3': (11.170,-4.918,24.044)
OP2: (8.267,-2.161,28.287)
C3': (11.080,-5.105,25.449)
C1': (11.960,-6.247,27.310)
C5': (11.508,-2.811,26.498)
O4': (12.233,-4.867,27.462)
C8: (10.043,-5.796,28.955)
O2': (12.701,-6.924,25.124)
C6: (8.904,-8.994,29.874)
C5: (9.465,-7.790,29.414)
C4: (10.505,-7.895,28.511)
P: (9.579,-1.656,27.853)
C4': (12.039,-4.185,26.192)
C2': (11.577,-6.487,25.853)
C2: (10.429,-10.095,28.518)
N1: (9.414,-10.152,29.393)
N3: (11.044,-9.031,28.016)
N6: (7.907,-9.053,30.755)
N7: (9.180,-6.455,29.685)
N9: (10.879,-6.607,28.222)
O5': (10.424,-2.925,27.407)
O3': (11.170,-4.918,24.044)
Image (generated by PyMOL):