Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02417:02639
Extra
PDB:
ATOM 1 O3' C A2416 53.418 116.859 142.876 1.00 39.79 O
ATOM 2 P A A2417 53.443 117.214 141.308 1.00 41.75 P
ATOM 3 OP1 A A2417 52.034 117.170 140.835 1.00 41.28 O
ATOM 4 OP2 A A2417 54.468 116.374 140.634 1.00 40.19 O
ATOM 5 O5' A A2417 53.959 118.719 141.271 1.00 38.37 O
ATOM 6 C5' A A2417 53.185 119.776 141.849 1.00 37.67 C
ATOM 7 C4' A A2417 54.003 121.038 141.908 1.00 39.41 C
ATOM 8 O4' A A2417 55.174 120.802 142.732 1.00 39.69 O
ATOM 9 C3' A A2417 54.591 121.505 140.587 1.00 40.31 C
ATOM 10 O3' A A2417 53.634 122.227 139.817 1.00 41.43 O
ATOM 11 C2' A A2417 55.750 122.375 141.052 1.00 39.40 C
ATOM 12 O2' A A2417 55.307 123.632 141.523 1.00 38.71 O
ATOM 13 C1' A A2417 56.265 121.566 142.242 1.00 37.85 C
ATOM 14 N9 A A2417 57.365 120.656 141.918 1.00 36.19 N
ATOM 15 C8 A A2417 57.302 119.341 141.522 1.00 35.95 C
ATOM 16 N7 A A2417 58.476 118.797 141.301 1.00 33.13 N
ATOM 17 C5 A A2417 59.372 119.821 141.570 1.00 33.58 C
ATOM 18 C6 A A2417 60.770 119.889 141.514 1.00 33.35 C
ATOM 19 N6 A A2417 61.550 118.863 141.172 1.00 34.02 N
ATOM 20 N1 A A2417 61.353 121.063 141.830 1.00 32.64 N
ATOM 21 C2 A A2417 60.577 122.086 142.192 1.00 33.45 C
ATOM 22 N3 A A2417 59.256 122.146 142.293 1.00 34.46 N
ATOM 23 C4 A A2417 58.703 120.969 141.957 1.00 34.92 C
ATOM 24 P A A2418 53.655 122.122 138.211 1.00 41.14 P
ATOM 25 OP1 A A2418 52.410 122.745 137.686 1.00 42.12 O
ATOM 26 OP2 A A2418 53.985 120.722 137.845 1.00 39.56 O
ATOM 27 O5' A A2418 54.863 123.061 137.785 1.00 39.30 O
TER
ATOM 1 O3' A B2638 54.795 128.333 148.882 1.00 51.54 O
ATOM 2 P A B2639 54.000 129.690 149.192 1.00 51.56 P
ATOM 3 OP1 A B2639 54.566 130.240 150.452 1.00 50.20 O
ATOM 4 OP2 A B2639 52.532 129.438 149.088 1.00 49.65 O
ATOM 5 O5' A B2639 54.445 130.651 148.006 1.00 50.22 O
ATOM 6 C5' A B2639 54.269 130.283 146.625 1.00 47.78 C
ATOM 7 C4' A B2639 55.335 130.946 145.794 1.00 46.36 C
ATOM 8 O4' A B2639 56.585 130.259 146.029 1.00 45.99 O
ATOM 9 C3' A B2639 55.204 130.837 144.289 1.00 47.33 C
ATOM 10 O3' A B2639 54.300 131.815 143.780 1.00 48.92 O
ATOM 11 C2' A B2639 56.627 131.170 143.846 1.00 46.67 C
ATOM 12 O2' A B2639 56.880 132.556 143.896 1.00 50.85 O
ATOM 13 C1' A B2639 57.461 130.526 144.955 1.00 44.60 C
ATOM 14 N9 A B2639 58.166 129.298 144.586 1.00 43.63 N
ATOM 15 C8 A B2639 59.528 129.139 144.532 1.00 45.14 C
ATOM 16 N7 A B2639 59.910 127.943 144.150 1.00 45.11 N
ATOM 17 C5 A B2639 58.718 127.264 143.942 1.00 43.84 C
ATOM 18 C6 A B2639 58.442 125.951 143.521 1.00 43.26 C
ATOM 19 N6 A B2639 59.385 125.051 143.222 1.00 40.37 N
ATOM 20 N1 A B2639 57.147 125.590 143.415 1.00 44.18 N
ATOM 21 C2 A B2639 56.203 126.492 143.716 1.00 45.28 C
ATOM 22 N3 A B2639 56.337 127.752 144.120 1.00 44.58 N
ATOM 23 C4 A B2639 57.634 128.083 144.214 1.00 43.68 C
ATOM 24 P A B2640 52.761 131.429 143.493 1.00 52.03 P
ATOM 25 OP1 A B2640 52.281 132.331 142.414 1.00 53.08 O
ATOM 26 OP2 A B2640 52.030 131.388 144.788 1.00 54.58 O
ATOM 27 O5' A B2640 52.797 129.939 142.926 1.00 51.11 O
TER
ATOM 2 P A A2417 53.443 117.214 141.308 1.00 41.75 P
ATOM 3 OP1 A A2417 52.034 117.170 140.835 1.00 41.28 O
ATOM 4 OP2 A A2417 54.468 116.374 140.634 1.00 40.19 O
ATOM 5 O5' A A2417 53.959 118.719 141.271 1.00 38.37 O
ATOM 6 C5' A A2417 53.185 119.776 141.849 1.00 37.67 C
ATOM 7 C4' A A2417 54.003 121.038 141.908 1.00 39.41 C
ATOM 8 O4' A A2417 55.174 120.802 142.732 1.00 39.69 O
ATOM 9 C3' A A2417 54.591 121.505 140.587 1.00 40.31 C
ATOM 10 O3' A A2417 53.634 122.227 139.817 1.00 41.43 O
ATOM 11 C2' A A2417 55.750 122.375 141.052 1.00 39.40 C
ATOM 12 O2' A A2417 55.307 123.632 141.523 1.00 38.71 O
ATOM 13 C1' A A2417 56.265 121.566 142.242 1.00 37.85 C
ATOM 14 N9 A A2417 57.365 120.656 141.918 1.00 36.19 N
ATOM 15 C8 A A2417 57.302 119.341 141.522 1.00 35.95 C
ATOM 16 N7 A A2417 58.476 118.797 141.301 1.00 33.13 N
ATOM 17 C5 A A2417 59.372 119.821 141.570 1.00 33.58 C
ATOM 18 C6 A A2417 60.770 119.889 141.514 1.00 33.35 C
ATOM 19 N6 A A2417 61.550 118.863 141.172 1.00 34.02 N
ATOM 20 N1 A A2417 61.353 121.063 141.830 1.00 32.64 N
ATOM 21 C2 A A2417 60.577 122.086 142.192 1.00 33.45 C
ATOM 22 N3 A A2417 59.256 122.146 142.293 1.00 34.46 N
ATOM 23 C4 A A2417 58.703 120.969 141.957 1.00 34.92 C
ATOM 24 P A A2418 53.655 122.122 138.211 1.00 41.14 P
ATOM 25 OP1 A A2418 52.410 122.745 137.686 1.00 42.12 O
ATOM 26 OP2 A A2418 53.985 120.722 137.845 1.00 39.56 O
ATOM 27 O5' A A2418 54.863 123.061 137.785 1.00 39.30 O
TER
ATOM 1 O3' A B2638 54.795 128.333 148.882 1.00 51.54 O
ATOM 2 P A B2639 54.000 129.690 149.192 1.00 51.56 P
ATOM 3 OP1 A B2639 54.566 130.240 150.452 1.00 50.20 O
ATOM 4 OP2 A B2639 52.532 129.438 149.088 1.00 49.65 O
ATOM 5 O5' A B2639 54.445 130.651 148.006 1.00 50.22 O
ATOM 6 C5' A B2639 54.269 130.283 146.625 1.00 47.78 C
ATOM 7 C4' A B2639 55.335 130.946 145.794 1.00 46.36 C
ATOM 8 O4' A B2639 56.585 130.259 146.029 1.00 45.99 O
ATOM 9 C3' A B2639 55.204 130.837 144.289 1.00 47.33 C
ATOM 10 O3' A B2639 54.300 131.815 143.780 1.00 48.92 O
ATOM 11 C2' A B2639 56.627 131.170 143.846 1.00 46.67 C
ATOM 12 O2' A B2639 56.880 132.556 143.896 1.00 50.85 O
ATOM 13 C1' A B2639 57.461 130.526 144.955 1.00 44.60 C
ATOM 14 N9 A B2639 58.166 129.298 144.586 1.00 43.63 N
ATOM 15 C8 A B2639 59.528 129.139 144.532 1.00 45.14 C
ATOM 16 N7 A B2639 59.910 127.943 144.150 1.00 45.11 N
ATOM 17 C5 A B2639 58.718 127.264 143.942 1.00 43.84 C
ATOM 18 C6 A B2639 58.442 125.951 143.521 1.00 43.26 C
ATOM 19 N6 A B2639 59.385 125.051 143.222 1.00 40.37 N
ATOM 20 N1 A B2639 57.147 125.590 143.415 1.00 44.18 N
ATOM 21 C2 A B2639 56.203 126.492 143.716 1.00 45.28 C
ATOM 22 N3 A B2639 56.337 127.752 144.120 1.00 44.58 N
ATOM 23 C4 A B2639 57.634 128.083 144.214 1.00 43.68 C
ATOM 24 P A B2640 52.761 131.429 143.493 1.00 52.03 P
ATOM 25 OP1 A B2640 52.281 132.331 142.414 1.00 53.08 O
ATOM 26 OP2 A B2640 52.030 131.388 144.788 1.00 54.58 O
ATOM 27 O5' A B2640 52.797 129.939 142.926 1.00 51.11 O
TER
Atoms:
OP1: (52.034,117.170,140.835)
OP2: (54.468,116.374,140.634)
C3': (54.591,121.505,140.587)
C1': (56.265,121.566,142.242)
C5': (53.185,119.776,141.849)
O4': (55.174,120.802,142.732)
C8: (57.302,119.341,141.522)
O2': (55.307,123.632,141.523)
C6: (60.770,119.889,141.514)
C5: (59.372,119.821,141.570)
C4: (58.703,120.969,141.957)
P: (53.443,117.214,141.308)
C4': (54.003,121.038,141.908)
C2': (55.750,122.375,141.052)
C2: (60.577,122.086,142.192)
N1: (61.353,121.063,141.830)
N3: (59.256,122.146,142.293)
N6: (61.550,118.863,141.172)
N7: (58.476,118.797,141.301)
N9: (57.365,120.656,141.918)
O5': (53.959,118.719,141.271)
O3': (53.634,122.227,139.817)
OP2: (54.468,116.374,140.634)
C3': (54.591,121.505,140.587)
C1': (56.265,121.566,142.242)
C5': (53.185,119.776,141.849)
O4': (55.174,120.802,142.732)
C8: (57.302,119.341,141.522)
O2': (55.307,123.632,141.523)
C6: (60.770,119.889,141.514)
C5: (59.372,119.821,141.570)
C4: (58.703,120.969,141.957)
P: (53.443,117.214,141.308)
C4': (54.003,121.038,141.908)
C2': (55.750,122.375,141.052)
C2: (60.577,122.086,142.192)
N1: (61.353,121.063,141.830)
N3: (59.256,122.146,142.293)
N6: (61.550,118.863,141.172)
N7: (58.476,118.797,141.301)
N9: (57.365,120.656,141.918)
O5': (53.959,118.719,141.271)
O3': (53.634,122.227,139.817)
OP1: (54.566,130.240,150.452)
OP2: (52.532,129.438,149.088)
C3': (55.204,130.837,144.289)
C1': (57.461,130.526,144.955)
C5': (54.269,130.283,146.625)
O4': (56.585,130.259,146.029)
C8: (59.528,129.139,144.532)
O2': (56.880,132.556,143.896)
C6: (58.442,125.951,143.521)
C5: (58.718,127.264,143.942)
C4: (57.634,128.083,144.214)
P: (54.000,129.690,149.192)
C4': (55.335,130.946,145.794)
C2': (56.627,131.170,143.846)
C2: (56.203,126.492,143.716)
N1: (57.147,125.590,143.415)
N3: (56.337,127.752,144.120)
N6: (59.385,125.051,143.222)
N7: (59.910,127.943,144.150)
N9: (58.166,129.298,144.586)
O5': (54.445,130.651,148.006)
O3': (54.300,131.815,143.780)
OP2: (52.532,129.438,149.088)
C3': (55.204,130.837,144.289)
C1': (57.461,130.526,144.955)
C5': (54.269,130.283,146.625)
O4': (56.585,130.259,146.029)
C8: (59.528,129.139,144.532)
O2': (56.880,132.556,143.896)
C6: (58.442,125.951,143.521)
C5: (58.718,127.264,143.942)
C4: (57.634,128.083,144.214)
P: (54.000,129.690,149.192)
C4': (55.335,130.946,145.794)
C2': (56.627,131.170,143.846)
C2: (56.203,126.492,143.716)
N1: (57.147,125.590,143.415)
N3: (56.337,127.752,144.120)
N6: (59.385,125.051,143.222)
N7: (59.910,127.943,144.150)
N9: (58.166,129.298,144.586)
O5': (54.445,130.651,148.006)
O3': (54.300,131.815,143.780)
Image (generated by PyMOL):