Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02417:02639
Extra
PDB:
ATOM 1 O3' C A2416 53.441 116.918 142.880 1.00 42.68 O
ATOM 2 P A A2417 53.508 117.181 141.297 1.00 43.52 P
ATOM 3 OP1 A A2417 52.128 116.997 140.787 1.00 40.89 O
ATOM 4 OP2 A A2417 54.617 116.390 140.705 1.00 41.33 O
ATOM 5 O5' A A2417 53.945 118.706 141.195 1.00 42.15 O
ATOM 6 C5' A A2417 53.159 119.745 141.791 1.00 42.75 C
ATOM 7 C4' A A2417 53.959 121.019 141.847 1.00 43.52 C
ATOM 8 O4' A A2417 55.109 120.798 142.698 1.00 43.93 O
ATOM 9 C3' A A2417 54.568 121.487 140.534 1.00 45.14 C
ATOM 10 O3' A A2417 53.621 122.205 139.739 1.00 47.66 O
ATOM 11 C2' A A2417 55.716 122.362 141.021 1.00 43.83 C
ATOM 12 O2' A A2417 55.276 123.623 141.480 1.00 43.66 O
ATOM 13 C1' A A2417 56.207 121.559 142.226 1.00 42.72 C
ATOM 14 N9 A A2417 57.310 120.644 141.920 1.00 41.30 N
ATOM 15 C8 A A2417 57.249 119.319 141.552 1.00 39.90 C
ATOM 16 N7 A A2417 58.423 118.778 141.329 1.00 37.91 N
ATOM 17 C5 A A2417 59.317 119.812 141.570 1.00 39.34 C
ATOM 18 C6 A A2417 60.719 119.883 141.508 1.00 39.17 C
ATOM 19 N6 A A2417 61.499 118.851 141.170 1.00 41.00 N
ATOM 20 N1 A A2417 61.303 121.063 141.812 1.00 37.95 N
ATOM 21 C2 A A2417 60.525 122.092 142.157 1.00 38.87 C
ATOM 22 N3 A A2417 59.200 122.151 142.255 1.00 40.05 N
ATOM 23 C4 A A2417 58.648 120.964 141.942 1.00 40.35 C
ATOM 24 P A A2418 53.721 122.168 138.129 1.00 47.91 P
ATOM 25 OP1 A A2418 52.545 122.904 137.612 1.00 48.58 O
ATOM 26 OP2 A A2418 53.971 120.776 137.685 1.00 46.82 O
ATOM 27 O5' A A2418 55.007 123.036 137.792 1.00 46.30 O
TER
ATOM 1 O3' A B2638 54.867 128.217 148.775 1.00 56.50 O
ATOM 2 P A B2639 54.056 129.552 149.150 1.00 56.18 P
ATOM 3 OP1 A B2639 54.611 130.045 150.436 1.00 54.77 O
ATOM 4 OP2 A B2639 52.592 129.285 149.030 1.00 54.88 O
ATOM 5 O5' A B2639 54.466 130.567 147.997 1.00 55.29 O
ATOM 6 C5' A B2639 54.258 130.245 146.608 1.00 53.05 C
ATOM 7 C4' A B2639 55.356 130.857 145.778 1.00 52.04 C
ATOM 8 O4' A B2639 56.580 130.120 146.003 1.00 50.11 O
ATOM 9 C3' A B2639 55.216 130.732 144.276 1.00 51.53 C
ATOM 10 O3' A B2639 54.315 131.711 143.768 1.00 53.42 O
ATOM 11 C2' A B2639 56.642 131.026 143.821 1.00 50.28 C
ATOM 12 O2' A B2639 56.918 132.406 143.824 1.00 51.69 O
ATOM 13 C1' A B2639 57.467 130.388 144.941 1.00 49.04 C
ATOM 14 N9 A B2639 58.171 129.160 144.576 1.00 48.96 N
ATOM 15 C8 A B2639 59.532 128.986 144.571 1.00 50.62 C
ATOM 16 N7 A B2639 59.918 127.805 144.150 1.00 49.67 N
ATOM 17 C5 A B2639 58.730 127.153 143.864 1.00 49.14 C
ATOM 18 C6 A B2639 58.462 125.876 143.357 1.00 48.34 C
ATOM 19 N6 A B2639 59.411 124.999 143.020 1.00 46.27 N
ATOM 20 N1 A B2639 57.169 125.527 143.198 1.00 48.93 N
ATOM 21 C2 A B2639 56.220 126.414 143.525 1.00 49.12 C
ATOM 22 N3 A B2639 56.347 127.651 143.999 1.00 49.16 N
ATOM 23 C4 A B2639 57.643 127.967 144.144 1.00 49.01 C
ATOM 24 P A B2640 52.799 131.298 143.403 1.00 58.43 P
ATOM 25 OP1 A B2640 52.366 132.176 142.279 1.00 58.75 O
ATOM 26 OP2 A B2640 51.976 131.232 144.646 1.00 57.91 O
ATOM 27 O5' A B2640 52.900 129.810 142.853 1.00 57.06 O
TER
ATOM 2 P A A2417 53.508 117.181 141.297 1.00 43.52 P
ATOM 3 OP1 A A2417 52.128 116.997 140.787 1.00 40.89 O
ATOM 4 OP2 A A2417 54.617 116.390 140.705 1.00 41.33 O
ATOM 5 O5' A A2417 53.945 118.706 141.195 1.00 42.15 O
ATOM 6 C5' A A2417 53.159 119.745 141.791 1.00 42.75 C
ATOM 7 C4' A A2417 53.959 121.019 141.847 1.00 43.52 C
ATOM 8 O4' A A2417 55.109 120.798 142.698 1.00 43.93 O
ATOM 9 C3' A A2417 54.568 121.487 140.534 1.00 45.14 C
ATOM 10 O3' A A2417 53.621 122.205 139.739 1.00 47.66 O
ATOM 11 C2' A A2417 55.716 122.362 141.021 1.00 43.83 C
ATOM 12 O2' A A2417 55.276 123.623 141.480 1.00 43.66 O
ATOM 13 C1' A A2417 56.207 121.559 142.226 1.00 42.72 C
ATOM 14 N9 A A2417 57.310 120.644 141.920 1.00 41.30 N
ATOM 15 C8 A A2417 57.249 119.319 141.552 1.00 39.90 C
ATOM 16 N7 A A2417 58.423 118.778 141.329 1.00 37.91 N
ATOM 17 C5 A A2417 59.317 119.812 141.570 1.00 39.34 C
ATOM 18 C6 A A2417 60.719 119.883 141.508 1.00 39.17 C
ATOM 19 N6 A A2417 61.499 118.851 141.170 1.00 41.00 N
ATOM 20 N1 A A2417 61.303 121.063 141.812 1.00 37.95 N
ATOM 21 C2 A A2417 60.525 122.092 142.157 1.00 38.87 C
ATOM 22 N3 A A2417 59.200 122.151 142.255 1.00 40.05 N
ATOM 23 C4 A A2417 58.648 120.964 141.942 1.00 40.35 C
ATOM 24 P A A2418 53.721 122.168 138.129 1.00 47.91 P
ATOM 25 OP1 A A2418 52.545 122.904 137.612 1.00 48.58 O
ATOM 26 OP2 A A2418 53.971 120.776 137.685 1.00 46.82 O
ATOM 27 O5' A A2418 55.007 123.036 137.792 1.00 46.30 O
TER
ATOM 1 O3' A B2638 54.867 128.217 148.775 1.00 56.50 O
ATOM 2 P A B2639 54.056 129.552 149.150 1.00 56.18 P
ATOM 3 OP1 A B2639 54.611 130.045 150.436 1.00 54.77 O
ATOM 4 OP2 A B2639 52.592 129.285 149.030 1.00 54.88 O
ATOM 5 O5' A B2639 54.466 130.567 147.997 1.00 55.29 O
ATOM 6 C5' A B2639 54.258 130.245 146.608 1.00 53.05 C
ATOM 7 C4' A B2639 55.356 130.857 145.778 1.00 52.04 C
ATOM 8 O4' A B2639 56.580 130.120 146.003 1.00 50.11 O
ATOM 9 C3' A B2639 55.216 130.732 144.276 1.00 51.53 C
ATOM 10 O3' A B2639 54.315 131.711 143.768 1.00 53.42 O
ATOM 11 C2' A B2639 56.642 131.026 143.821 1.00 50.28 C
ATOM 12 O2' A B2639 56.918 132.406 143.824 1.00 51.69 O
ATOM 13 C1' A B2639 57.467 130.388 144.941 1.00 49.04 C
ATOM 14 N9 A B2639 58.171 129.160 144.576 1.00 48.96 N
ATOM 15 C8 A B2639 59.532 128.986 144.571 1.00 50.62 C
ATOM 16 N7 A B2639 59.918 127.805 144.150 1.00 49.67 N
ATOM 17 C5 A B2639 58.730 127.153 143.864 1.00 49.14 C
ATOM 18 C6 A B2639 58.462 125.876 143.357 1.00 48.34 C
ATOM 19 N6 A B2639 59.411 124.999 143.020 1.00 46.27 N
ATOM 20 N1 A B2639 57.169 125.527 143.198 1.00 48.93 N
ATOM 21 C2 A B2639 56.220 126.414 143.525 1.00 49.12 C
ATOM 22 N3 A B2639 56.347 127.651 143.999 1.00 49.16 N
ATOM 23 C4 A B2639 57.643 127.967 144.144 1.00 49.01 C
ATOM 24 P A B2640 52.799 131.298 143.403 1.00 58.43 P
ATOM 25 OP1 A B2640 52.366 132.176 142.279 1.00 58.75 O
ATOM 26 OP2 A B2640 51.976 131.232 144.646 1.00 57.91 O
ATOM 27 O5' A B2640 52.900 129.810 142.853 1.00 57.06 O
TER
Atoms:
OP1: (52.128,116.997,140.787)
OP2: (54.617,116.390,140.705)
C3': (54.568,121.487,140.534)
C1': (56.207,121.559,142.226)
C5': (53.159,119.745,141.791)
O4': (55.109,120.798,142.698)
C8: (57.249,119.319,141.552)
O2': (55.276,123.623,141.480)
C6: (60.719,119.883,141.508)
C5: (59.317,119.812,141.570)
C4: (58.648,120.964,141.942)
P: (53.508,117.181,141.297)
C4': (53.959,121.019,141.847)
C2': (55.716,122.362,141.021)
C2: (60.525,122.092,142.157)
N1: (61.303,121.063,141.812)
N3: (59.200,122.151,142.255)
N6: (61.499,118.851,141.170)
N7: (58.423,118.778,141.329)
N9: (57.310,120.644,141.920)
O5': (53.945,118.706,141.195)
O3': (53.621,122.205,139.739)
OP2: (54.617,116.390,140.705)
C3': (54.568,121.487,140.534)
C1': (56.207,121.559,142.226)
C5': (53.159,119.745,141.791)
O4': (55.109,120.798,142.698)
C8: (57.249,119.319,141.552)
O2': (55.276,123.623,141.480)
C6: (60.719,119.883,141.508)
C5: (59.317,119.812,141.570)
C4: (58.648,120.964,141.942)
P: (53.508,117.181,141.297)
C4': (53.959,121.019,141.847)
C2': (55.716,122.362,141.021)
C2: (60.525,122.092,142.157)
N1: (61.303,121.063,141.812)
N3: (59.200,122.151,142.255)
N6: (61.499,118.851,141.170)
N7: (58.423,118.778,141.329)
N9: (57.310,120.644,141.920)
O5': (53.945,118.706,141.195)
O3': (53.621,122.205,139.739)
OP1: (54.611,130.045,150.436)
OP2: (52.592,129.285,149.030)
C3': (55.216,130.732,144.276)
C1': (57.467,130.388,144.941)
C5': (54.258,130.245,146.608)
O4': (56.580,130.120,146.003)
C8: (59.532,128.986,144.571)
O2': (56.918,132.406,143.824)
C6: (58.462,125.876,143.357)
C5: (58.730,127.153,143.864)
C4: (57.643,127.967,144.144)
P: (54.056,129.552,149.150)
C4': (55.356,130.857,145.778)
C2': (56.642,131.026,143.821)
C2: (56.220,126.414,143.525)
N1: (57.169,125.527,143.198)
N3: (56.347,127.651,143.999)
N6: (59.411,124.999,143.020)
N7: (59.918,127.805,144.150)
N9: (58.171,129.160,144.576)
O5': (54.466,130.567,147.997)
O3': (54.315,131.711,143.768)
OP2: (52.592,129.285,149.030)
C3': (55.216,130.732,144.276)
C1': (57.467,130.388,144.941)
C5': (54.258,130.245,146.608)
O4': (56.580,130.120,146.003)
C8: (59.532,128.986,144.571)
O2': (56.918,132.406,143.824)
C6: (58.462,125.876,143.357)
C5: (58.730,127.153,143.864)
C4: (57.643,127.967,144.144)
P: (54.056,129.552,149.150)
C4': (55.356,130.857,145.778)
C2': (56.642,131.026,143.821)
C2: (56.220,126.414,143.525)
N1: (57.169,125.527,143.198)
N3: (56.347,127.651,143.999)
N6: (59.411,124.999,143.020)
N7: (59.918,127.805,144.150)
N9: (58.171,129.160,144.576)
O5': (54.466,130.567,147.997)
O3': (54.315,131.711,143.768)
Image (generated by PyMOL):