Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:13057:13062
Extra
PDB:
ATOM 1 O3' U A3056 35.428 57.906 52.303 1.00 55.17 O
ATOM 2 P A A3057 34.982 56.517 52.971 1.00 47.34 P
ATOM 3 OP1 A A3057 34.372 55.705 51.891 1.00 47.12 O
ATOM 4 OP2 A A3057 34.185 56.835 54.190 1.00 47.45 O
ATOM 5 O5' A A3057 36.368 55.889 53.422 1.00 46.96 O
ATOM 6 C5' A A3057 37.247 55.292 52.487 1.00 46.73 C
ATOM 7 C4' A A3057 38.423 54.689 53.181 1.00 46.38 C
ATOM 8 O4' A A3057 39.130 55.716 53.888 1.00 46.72 O
ATOM 9 C3' A A3057 38.108 53.710 54.276 1.00 45.96 C
ATOM 10 O3' A A3057 37.696 52.458 53.806 1.00 45.52 O
ATOM 11 C2' A A3057 39.410 53.678 55.043 1.00 45.84 C
ATOM 12 O2' A A3057 40.383 52.948 54.325 1.00 45.55 O
ATOM 13 C1' A A3057 39.781 55.152 55.006 1.00 46.41 C
ATOM 14 N9 A A3057 39.326 55.863 56.208 1.00 46.66 N
ATOM 15 C8 A A3057 38.176 56.571 56.399 1.00 47.00 C
ATOM 16 N7 A A3057 38.040 57.090 57.593 1.00 47.18 N
ATOM 17 C5 A A3057 39.184 56.691 58.230 1.00 46.94 C
ATOM 18 C6 A A3057 39.660 56.910 59.527 1.00 46.98 C
ATOM 19 N6 A A3057 39.058 57.647 60.449 1.00 47.30 N
ATOM 20 N1 A A3057 40.831 56.336 59.843 1.00 46.70 N
ATOM 21 C2 A A3057 41.493 55.630 58.915 1.00 46.40 C
ATOM 22 N3 A A3057 41.156 55.360 57.661 1.00 46.34 N
ATOM 23 C4 A A3057 39.980 55.931 57.387 1.00 46.62 C
ATOM 24 P U A3058 36.855 51.492 54.753 1.00 44.29 P
ATOM 25 OP1 U A3058 36.529 50.316 53.944 1.00 43.91 O
ATOM 26 OP2 U A3058 35.778 52.293 55.324 1.00 44.63 O
ATOM 27 O5' U A3058 37.891 51.083 55.908 1.00 44.03 O
TER
ATOM 1 O3' G B3061 51.253 49.876 58.093 1.00 47.44 O
ATOM 2 P A B3062 51.050 51.258 57.312 1.00 48.72 P
ATOM 3 OP1 A B3062 52.363 51.625 56.768 1.00 48.89 O
ATOM 4 OP2 A B3062 50.366 52.213 58.228 1.00 49.05 O
ATOM 5 O5' A B3062 50.064 50.869 56.133 1.00 48.61 O
ATOM 6 C5' A B3062 50.474 50.020 55.087 1.00 48.34 C
ATOM 7 C4' A B3062 49.334 49.738 54.157 1.00 48.27 C
ATOM 8 O4' A B3062 48.232 49.152 54.893 1.00 48.03 O
ATOM 9 C3' A B3062 48.709 50.943 53.485 1.00 48.74 C
ATOM 10 O3' A B3062 49.447 51.398 52.376 1.00 48.97 O
ATOM 11 C2' A B3062 47.349 50.399 53.107 1.00 48.57 C
ATOM 12 O2' A B3062 47.473 49.508 52.017 1.00 48.31 O
ATOM 13 C1' A B3062 47.012 49.602 54.357 1.00 48.22 C
ATOM 14 N9 A B3062 46.365 50.468 55.344 1.00 48.50 N
ATOM 15 C8 A B3062 46.887 50.966 56.504 1.00 48.63 C
ATOM 16 N7 A B3062 46.094 51.784 57.149 1.00 48.93 N
ATOM 17 C5 A B3062 44.965 51.825 56.337 1.00 48.99 C
ATOM 18 C6 A B3062 43.757 52.545 56.463 1.00 49.28 C
ATOM 19 N6 A B3062 43.529 53.332 57.517 1.00 49.55 N
ATOM 20 N1 A B3062 42.832 52.403 55.482 1.00 49.29 N
ATOM 21 C2 A B3062 43.132 51.567 54.468 1.00 49.01 C
ATOM 22 N3 A B3062 44.217 50.835 54.215 1.00 48.72 N
ATOM 23 C4 A B3062 45.114 51.017 55.211 1.00 48.73 C
ATOM 24 P C B3063 49.394 52.933 51.952 1.00 47.22 P
ATOM 25 OP1 C B3063 50.023 53.030 50.603 1.00 47.34 O
ATOM 26 OP2 C B3063 49.944 53.705 53.080 1.00 47.45 O
ATOM 27 O5' C B3063 47.855 53.236 51.811 1.00 47.35 O
TER
ATOM 2 P A A3057 34.982 56.517 52.971 1.00 47.34 P
ATOM 3 OP1 A A3057 34.372 55.705 51.891 1.00 47.12 O
ATOM 4 OP2 A A3057 34.185 56.835 54.190 1.00 47.45 O
ATOM 5 O5' A A3057 36.368 55.889 53.422 1.00 46.96 O
ATOM 6 C5' A A3057 37.247 55.292 52.487 1.00 46.73 C
ATOM 7 C4' A A3057 38.423 54.689 53.181 1.00 46.38 C
ATOM 8 O4' A A3057 39.130 55.716 53.888 1.00 46.72 O
ATOM 9 C3' A A3057 38.108 53.710 54.276 1.00 45.96 C
ATOM 10 O3' A A3057 37.696 52.458 53.806 1.00 45.52 O
ATOM 11 C2' A A3057 39.410 53.678 55.043 1.00 45.84 C
ATOM 12 O2' A A3057 40.383 52.948 54.325 1.00 45.55 O
ATOM 13 C1' A A3057 39.781 55.152 55.006 1.00 46.41 C
ATOM 14 N9 A A3057 39.326 55.863 56.208 1.00 46.66 N
ATOM 15 C8 A A3057 38.176 56.571 56.399 1.00 47.00 C
ATOM 16 N7 A A3057 38.040 57.090 57.593 1.00 47.18 N
ATOM 17 C5 A A3057 39.184 56.691 58.230 1.00 46.94 C
ATOM 18 C6 A A3057 39.660 56.910 59.527 1.00 46.98 C
ATOM 19 N6 A A3057 39.058 57.647 60.449 1.00 47.30 N
ATOM 20 N1 A A3057 40.831 56.336 59.843 1.00 46.70 N
ATOM 21 C2 A A3057 41.493 55.630 58.915 1.00 46.40 C
ATOM 22 N3 A A3057 41.156 55.360 57.661 1.00 46.34 N
ATOM 23 C4 A A3057 39.980 55.931 57.387 1.00 46.62 C
ATOM 24 P U A3058 36.855 51.492 54.753 1.00 44.29 P
ATOM 25 OP1 U A3058 36.529 50.316 53.944 1.00 43.91 O
ATOM 26 OP2 U A3058 35.778 52.293 55.324 1.00 44.63 O
ATOM 27 O5' U A3058 37.891 51.083 55.908 1.00 44.03 O
TER
ATOM 1 O3' G B3061 51.253 49.876 58.093 1.00 47.44 O
ATOM 2 P A B3062 51.050 51.258 57.312 1.00 48.72 P
ATOM 3 OP1 A B3062 52.363 51.625 56.768 1.00 48.89 O
ATOM 4 OP2 A B3062 50.366 52.213 58.228 1.00 49.05 O
ATOM 5 O5' A B3062 50.064 50.869 56.133 1.00 48.61 O
ATOM 6 C5' A B3062 50.474 50.020 55.087 1.00 48.34 C
ATOM 7 C4' A B3062 49.334 49.738 54.157 1.00 48.27 C
ATOM 8 O4' A B3062 48.232 49.152 54.893 1.00 48.03 O
ATOM 9 C3' A B3062 48.709 50.943 53.485 1.00 48.74 C
ATOM 10 O3' A B3062 49.447 51.398 52.376 1.00 48.97 O
ATOM 11 C2' A B3062 47.349 50.399 53.107 1.00 48.57 C
ATOM 12 O2' A B3062 47.473 49.508 52.017 1.00 48.31 O
ATOM 13 C1' A B3062 47.012 49.602 54.357 1.00 48.22 C
ATOM 14 N9 A B3062 46.365 50.468 55.344 1.00 48.50 N
ATOM 15 C8 A B3062 46.887 50.966 56.504 1.00 48.63 C
ATOM 16 N7 A B3062 46.094 51.784 57.149 1.00 48.93 N
ATOM 17 C5 A B3062 44.965 51.825 56.337 1.00 48.99 C
ATOM 18 C6 A B3062 43.757 52.545 56.463 1.00 49.28 C
ATOM 19 N6 A B3062 43.529 53.332 57.517 1.00 49.55 N
ATOM 20 N1 A B3062 42.832 52.403 55.482 1.00 49.29 N
ATOM 21 C2 A B3062 43.132 51.567 54.468 1.00 49.01 C
ATOM 22 N3 A B3062 44.217 50.835 54.215 1.00 48.72 N
ATOM 23 C4 A B3062 45.114 51.017 55.211 1.00 48.73 C
ATOM 24 P C B3063 49.394 52.933 51.952 1.00 47.22 P
ATOM 25 OP1 C B3063 50.023 53.030 50.603 1.00 47.34 O
ATOM 26 OP2 C B3063 49.944 53.705 53.080 1.00 47.45 O
ATOM 27 O5' C B3063 47.855 53.236 51.811 1.00 47.35 O
TER
Atoms:
OP1: (34.372,55.705,51.891)
OP2: (34.185,56.835,54.190)
C3': (38.108,53.710,54.276)
C1': (39.781,55.152,55.006)
C5': (37.247,55.292,52.487)
O4': (39.130,55.716,53.888)
C8: (38.176,56.571,56.399)
O2': (40.383,52.948,54.325)
C6: (39.660,56.910,59.527)
C5: (39.184,56.691,58.230)
C4: (39.980,55.931,57.387)
P: (34.982,56.517,52.971)
C4': (38.423,54.689,53.181)
C2': (39.410,53.678,55.043)
C2: (41.493,55.630,58.915)
N1: (40.831,56.336,59.843)
N3: (41.156,55.360,57.661)
N6: (39.058,57.647,60.449)
N7: (38.040,57.090,57.593)
N9: (39.326,55.863,56.208)
O5': (36.368,55.889,53.422)
O3': (37.696,52.458,53.806)
OP2: (34.185,56.835,54.190)
C3': (38.108,53.710,54.276)
C1': (39.781,55.152,55.006)
C5': (37.247,55.292,52.487)
O4': (39.130,55.716,53.888)
C8: (38.176,56.571,56.399)
O2': (40.383,52.948,54.325)
C6: (39.660,56.910,59.527)
C5: (39.184,56.691,58.230)
C4: (39.980,55.931,57.387)
P: (34.982,56.517,52.971)
C4': (38.423,54.689,53.181)
C2': (39.410,53.678,55.043)
C2: (41.493,55.630,58.915)
N1: (40.831,56.336,59.843)
N3: (41.156,55.360,57.661)
N6: (39.058,57.647,60.449)
N7: (38.040,57.090,57.593)
N9: (39.326,55.863,56.208)
O5': (36.368,55.889,53.422)
O3': (37.696,52.458,53.806)
OP1: (52.363,51.625,56.768)
OP2: (50.366,52.213,58.228)
C3': (48.709,50.943,53.485)
C1': (47.012,49.602,54.357)
C5': (50.474,50.020,55.087)
O4': (48.232,49.152,54.893)
C8: (46.887,50.966,56.504)
O2': (47.473,49.508,52.017)
C6: (43.757,52.545,56.463)
C5: (44.965,51.825,56.337)
C4: (45.114,51.017,55.211)
P: (51.050,51.258,57.312)
C4': (49.334,49.738,54.157)
C2': (47.349,50.399,53.107)
C2: (43.132,51.567,54.468)
N1: (42.832,52.403,55.482)
N3: (44.217,50.835,54.215)
N6: (43.529,53.332,57.517)
N7: (46.094,51.784,57.149)
N9: (46.365,50.468,55.344)
O5': (50.064,50.869,56.133)
O3': (49.447,51.398,52.376)
OP2: (50.366,52.213,58.228)
C3': (48.709,50.943,53.485)
C1': (47.012,49.602,54.357)
C5': (50.474,50.020,55.087)
O4': (48.232,49.152,54.893)
C8: (46.887,50.966,56.504)
O2': (47.473,49.508,52.017)
C6: (43.757,52.545,56.463)
C5: (44.965,51.825,56.337)
C4: (45.114,51.017,55.211)
P: (51.050,51.258,57.312)
C4': (49.334,49.738,54.157)
C2': (47.349,50.399,53.107)
C2: (43.132,51.567,54.468)
N1: (42.832,52.403,55.482)
N3: (44.217,50.835,54.215)
N6: (43.529,53.332,57.517)
N7: (46.094,51.784,57.149)
N9: (46.365,50.468,55.344)
O5': (50.064,50.869,56.133)
O3': (49.447,51.398,52.376)
Image (generated by PyMOL):