Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:B11:B13
Extra
PDB:
ATOM 1 O3' A A 10 -1.917 -40.837 33.995 1.00 66.26 O
ATOM 2 P G A 11 -2.271 -41.657 35.324 1.00 67.39 P
ATOM 3 OP1 G A 11 -1.005 -42.111 35.945 1.00 67.49 O
ATOM 4 OP2 G A 11 -3.337 -42.643 35.015 1.00 66.69 O
ATOM 5 O5' G A 11 -2.851 -40.488 36.249 1.00 68.21 O
ATOM 6 C5' G A 11 -4.142 -40.561 36.820 1.00 68.84 C
ATOM 7 C4' G A 11 -4.087 -41.334 38.119 1.00 69.33 C
ATOM 8 O4' G A 11 -3.332 -40.601 39.116 1.00 69.98 O
ATOM 9 C3' G A 11 -5.458 -41.556 38.708 1.00 69.93 C
ATOM 10 O3' G A 11 -5.890 -42.822 38.268 1.00 71.00 O
ATOM 11 C2' G A 11 -5.221 -41.460 40.216 1.00 69.93 C
ATOM 12 O2' G A 11 -4.791 -42.675 40.793 1.00 69.48 O
ATOM 13 C1' G A 11 -4.095 -40.431 40.294 1.00 69.91 C
ATOM 14 N9 G A 11 -4.484 -39.015 40.374 1.00 70.20 N
ATOM 15 C8 G A 11 -5.665 -38.430 39.972 1.00 70.04 C
ATOM 16 N7 G A 11 -5.709 -37.144 40.171 1.00 70.41 N
ATOM 17 C5 G A 11 -4.480 -36.846 40.740 1.00 70.60 C
ATOM 18 C6 G A 11 -3.947 -35.604 41.171 1.00 71.11 C
ATOM 19 O6 G A 11 -4.478 -34.485 41.138 1.00 71.56 O
ATOM 20 N1 G A 11 -2.659 -35.733 41.689 1.00 71.34 N
ATOM 21 C2 G A 11 -1.968 -36.919 41.780 1.00 70.81 C
ATOM 22 N2 G A 11 -0.739 -36.848 42.307 1.00 70.64 N
ATOM 23 N3 G A 11 -2.456 -38.090 41.378 1.00 70.46 N
ATOM 24 C4 G A 11 -3.712 -37.984 40.870 1.00 70.36 C
ATOM 25 P A A 12 -7.443 -43.127 38.081 1.00 72.43 P
ATOM 26 OP1 A A 12 -7.555 -44.157 37.026 1.00 72.35 O
ATOM 27 OP2 A A 12 -8.179 -41.846 37.959 1.00 72.83 O
ATOM 28 O5' A A 12 -7.801 -43.808 39.483 1.00 74.61 O
TER
ATOM 1 O3' A B 12 -9.443 -41.641 42.342 1.00 80.63 O
ATOM 2 P A B 13 -8.596 -40.901 43.483 1.00 80.35 P
ATOM 3 OP1 A B 13 -9.054 -41.400 44.801 1.00 80.70 O
ATOM 4 OP2 A B 13 -8.698 -39.451 43.194 1.00 80.56 O
ATOM 5 O5' A B 13 -7.081 -41.365 43.235 1.00 78.40 O
ATOM 6 C5' A B 13 -6.400 -42.142 44.226 1.00 75.91 C
ATOM 7 C4' A B 13 -5.022 -41.597 44.564 1.00 74.26 C
ATOM 8 O4' A B 13 -4.583 -40.609 43.594 1.00 73.75 O
ATOM 9 C3' A B 13 -4.920 -40.867 45.893 1.00 73.52 C
ATOM 10 O3' A B 13 -4.793 -41.795 46.955 1.00 72.59 O
ATOM 11 C2' A B 13 -3.653 -40.043 45.685 1.00 73.29 C
ATOM 12 O2' A B 13 -2.468 -40.803 45.793 1.00 72.83 O
ATOM 13 C1' A B 13 -3.846 -39.585 44.243 1.00 73.06 C
ATOM 14 N9 A B 13 -4.568 -38.315 44.112 1.00 72.45 N
ATOM 15 C8 A B 13 -5.841 -38.137 43.650 1.00 71.90 C
ATOM 16 N7 A B 13 -6.238 -36.890 43.640 1.00 71.97 N
ATOM 17 C5 A B 13 -5.152 -36.193 44.132 1.00 71.91 C
ATOM 18 C6 A B 13 -4.930 -34.819 44.363 1.00 71.80 C
ATOM 19 N6 A B 13 -5.844 -33.877 44.126 1.00 71.60 N
ATOM 20 N1 A B 13 -3.731 -34.450 44.861 1.00 71.83 N
ATOM 21 C2 A B 13 -2.816 -35.398 45.104 1.00 72.11 C
ATOM 22 N3 A B 13 -2.905 -36.717 44.922 1.00 72.18 N
ATOM 23 C4 A B 13 -4.111 -37.055 44.428 1.00 72.19 C
ATOM 24 P C B 14 -5.773 -41.704 48.219 1.00 72.33 P
ATOM 25 OP1 C B 14 -5.571 -42.925 49.038 1.00 72.46 O
ATOM 26 OP2 C B 14 -7.135 -41.363 47.740 1.00 72.37 O
ATOM 27 O5' C B 14 -5.183 -40.447 49.012 1.00 70.76 O
TER
ATOM 2 P G A 11 -2.271 -41.657 35.324 1.00 67.39 P
ATOM 3 OP1 G A 11 -1.005 -42.111 35.945 1.00 67.49 O
ATOM 4 OP2 G A 11 -3.337 -42.643 35.015 1.00 66.69 O
ATOM 5 O5' G A 11 -2.851 -40.488 36.249 1.00 68.21 O
ATOM 6 C5' G A 11 -4.142 -40.561 36.820 1.00 68.84 C
ATOM 7 C4' G A 11 -4.087 -41.334 38.119 1.00 69.33 C
ATOM 8 O4' G A 11 -3.332 -40.601 39.116 1.00 69.98 O
ATOM 9 C3' G A 11 -5.458 -41.556 38.708 1.00 69.93 C
ATOM 10 O3' G A 11 -5.890 -42.822 38.268 1.00 71.00 O
ATOM 11 C2' G A 11 -5.221 -41.460 40.216 1.00 69.93 C
ATOM 12 O2' G A 11 -4.791 -42.675 40.793 1.00 69.48 O
ATOM 13 C1' G A 11 -4.095 -40.431 40.294 1.00 69.91 C
ATOM 14 N9 G A 11 -4.484 -39.015 40.374 1.00 70.20 N
ATOM 15 C8 G A 11 -5.665 -38.430 39.972 1.00 70.04 C
ATOM 16 N7 G A 11 -5.709 -37.144 40.171 1.00 70.41 N
ATOM 17 C5 G A 11 -4.480 -36.846 40.740 1.00 70.60 C
ATOM 18 C6 G A 11 -3.947 -35.604 41.171 1.00 71.11 C
ATOM 19 O6 G A 11 -4.478 -34.485 41.138 1.00 71.56 O
ATOM 20 N1 G A 11 -2.659 -35.733 41.689 1.00 71.34 N
ATOM 21 C2 G A 11 -1.968 -36.919 41.780 1.00 70.81 C
ATOM 22 N2 G A 11 -0.739 -36.848 42.307 1.00 70.64 N
ATOM 23 N3 G A 11 -2.456 -38.090 41.378 1.00 70.46 N
ATOM 24 C4 G A 11 -3.712 -37.984 40.870 1.00 70.36 C
ATOM 25 P A A 12 -7.443 -43.127 38.081 1.00 72.43 P
ATOM 26 OP1 A A 12 -7.555 -44.157 37.026 1.00 72.35 O
ATOM 27 OP2 A A 12 -8.179 -41.846 37.959 1.00 72.83 O
ATOM 28 O5' A A 12 -7.801 -43.808 39.483 1.00 74.61 O
TER
ATOM 1 O3' A B 12 -9.443 -41.641 42.342 1.00 80.63 O
ATOM 2 P A B 13 -8.596 -40.901 43.483 1.00 80.35 P
ATOM 3 OP1 A B 13 -9.054 -41.400 44.801 1.00 80.70 O
ATOM 4 OP2 A B 13 -8.698 -39.451 43.194 1.00 80.56 O
ATOM 5 O5' A B 13 -7.081 -41.365 43.235 1.00 78.40 O
ATOM 6 C5' A B 13 -6.400 -42.142 44.226 1.00 75.91 C
ATOM 7 C4' A B 13 -5.022 -41.597 44.564 1.00 74.26 C
ATOM 8 O4' A B 13 -4.583 -40.609 43.594 1.00 73.75 O
ATOM 9 C3' A B 13 -4.920 -40.867 45.893 1.00 73.52 C
ATOM 10 O3' A B 13 -4.793 -41.795 46.955 1.00 72.59 O
ATOM 11 C2' A B 13 -3.653 -40.043 45.685 1.00 73.29 C
ATOM 12 O2' A B 13 -2.468 -40.803 45.793 1.00 72.83 O
ATOM 13 C1' A B 13 -3.846 -39.585 44.243 1.00 73.06 C
ATOM 14 N9 A B 13 -4.568 -38.315 44.112 1.00 72.45 N
ATOM 15 C8 A B 13 -5.841 -38.137 43.650 1.00 71.90 C
ATOM 16 N7 A B 13 -6.238 -36.890 43.640 1.00 71.97 N
ATOM 17 C5 A B 13 -5.152 -36.193 44.132 1.00 71.91 C
ATOM 18 C6 A B 13 -4.930 -34.819 44.363 1.00 71.80 C
ATOM 19 N6 A B 13 -5.844 -33.877 44.126 1.00 71.60 N
ATOM 20 N1 A B 13 -3.731 -34.450 44.861 1.00 71.83 N
ATOM 21 C2 A B 13 -2.816 -35.398 45.104 1.00 72.11 C
ATOM 22 N3 A B 13 -2.905 -36.717 44.922 1.00 72.18 N
ATOM 23 C4 A B 13 -4.111 -37.055 44.428 1.00 72.19 C
ATOM 24 P C B 14 -5.773 -41.704 48.219 1.00 72.33 P
ATOM 25 OP1 C B 14 -5.571 -42.925 49.038 1.00 72.46 O
ATOM 26 OP2 C B 14 -7.135 -41.363 47.740 1.00 72.37 O
ATOM 27 O5' C B 14 -5.183 -40.447 49.012 1.00 70.76 O
TER
Atoms:
OP1: (-1.005,-42.111,35.945)
OP2: (-3.337,-42.643,35.015)
C3': (-5.458,-41.556,38.708)
C1': (-4.095,-40.431,40.294)
C5': (-4.142,-40.561,36.820)
O6: (-4.478,-34.485,41.138)
O4': (-3.332,-40.601,39.116)
C8: (-5.665,-38.430,39.972)
C2: (-1.968,-36.919,41.780)
C6: (-3.947,-35.604,41.171)
C5: (-4.480,-36.846,40.740)
C4: (-3.712,-37.984,40.870)
P: (-2.271,-41.657,35.324)
C4': (-4.087,-41.334,38.119)
C2': (-5.221,-41.460,40.216)
O2': (-4.791,-42.675,40.793)
N1: (-2.659,-35.733,41.689)
N2: (-0.739,-36.848,42.307)
N3: (-2.456,-38.090,41.378)
N7: (-5.709,-37.144,40.171)
N9: (-4.484,-39.015,40.374)
O5': (-2.851,-40.488,36.249)
O3': (-5.890,-42.822,38.268)
OP2: (-3.337,-42.643,35.015)
C3': (-5.458,-41.556,38.708)
C1': (-4.095,-40.431,40.294)
C5': (-4.142,-40.561,36.820)
O6: (-4.478,-34.485,41.138)
O4': (-3.332,-40.601,39.116)
C8: (-5.665,-38.430,39.972)
C2: (-1.968,-36.919,41.780)
C6: (-3.947,-35.604,41.171)
C5: (-4.480,-36.846,40.740)
C4: (-3.712,-37.984,40.870)
P: (-2.271,-41.657,35.324)
C4': (-4.087,-41.334,38.119)
C2': (-5.221,-41.460,40.216)
O2': (-4.791,-42.675,40.793)
N1: (-2.659,-35.733,41.689)
N2: (-0.739,-36.848,42.307)
N3: (-2.456,-38.090,41.378)
N7: (-5.709,-37.144,40.171)
N9: (-4.484,-39.015,40.374)
O5': (-2.851,-40.488,36.249)
O3': (-5.890,-42.822,38.268)
OP1: (-9.054,-41.400,44.801)
OP2: (-8.698,-39.451,43.194)
C3': (-4.920,-40.867,45.893)
C1': (-3.846,-39.585,44.243)
C5': (-6.400,-42.142,44.226)
O4': (-4.583,-40.609,43.594)
C8: (-5.841,-38.137,43.650)
O2': (-2.468,-40.803,45.793)
C6: (-4.930,-34.819,44.363)
C5: (-5.152,-36.193,44.132)
C4: (-4.111,-37.055,44.428)
P: (-8.596,-40.901,43.483)
C4': (-5.022,-41.597,44.564)
C2': (-3.653,-40.043,45.685)
C2: (-2.816,-35.398,45.104)
N1: (-3.731,-34.450,44.861)
N3: (-2.905,-36.717,44.922)
N6: (-5.844,-33.877,44.126)
N7: (-6.238,-36.890,43.640)
N9: (-4.568,-38.315,44.112)
O5': (-7.081,-41.365,43.235)
O3': (-4.793,-41.795,46.955)
OP2: (-8.698,-39.451,43.194)
C3': (-4.920,-40.867,45.893)
C1': (-3.846,-39.585,44.243)
C5': (-6.400,-42.142,44.226)
O4': (-4.583,-40.609,43.594)
C8: (-5.841,-38.137,43.650)
O2': (-2.468,-40.803,45.793)
C6: (-4.930,-34.819,44.363)
C5: (-5.152,-36.193,44.132)
C4: (-4.111,-37.055,44.428)
P: (-8.596,-40.901,43.483)
C4': (-5.022,-41.597,44.564)
C2': (-3.653,-40.043,45.685)
C2: (-2.816,-35.398,45.104)
N1: (-3.731,-34.450,44.861)
N3: (-2.905,-36.717,44.922)
N6: (-5.844,-33.877,44.126)
N7: (-6.238,-36.890,43.640)
N9: (-4.568,-38.315,44.112)
O5': (-7.081,-41.365,43.235)
O3': (-4.793,-41.795,46.955)
Image (generated by PyMOL):