Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDK:S7:S8
Extra
PDB:
ATOM 1 O3' G A 6 -5.765 102.018 -7.711 0.50 89.31 O
ATOM 2 P G A 7 -6.557 103.379 -7.352 0.50 87.21 P
ATOM 3 OP1 G A 7 -7.228 103.909 -8.579 0.50 83.56 O
ATOM 4 OP2 G A 7 -5.602 104.251 -6.586 0.50 85.87 O
ATOM 5 O5' G A 7 -7.671 102.933 -6.297 0.50 88.91 O
ATOM 6 C5' G A 7 -8.716 101.986 -6.685 0.50 91.79 C
ATOM 7 C4' G A 7 -9.447 101.431 -5.460 0.50 93.52 C
ATOM 8 O4' G A 7 -8.615 100.494 -4.686 0.50 95.20 O
ATOM 9 C3' G A 7 -9.915 102.449 -4.434 0.50 93.93 C
ATOM 10 O3' G A 7 -11.106 103.117 -4.814 0.50 91.76 O
ATOM 11 C2' G A 7 -10.124 101.592 -3.193 0.50 95.57 C
ATOM 12 O2' G A 7 -11.392 100.947 -3.237 0.50 97.69 O
ATOM 13 C1' G A 7 -8.982 100.567 -3.315 0.50 95.26 C
ATOM 14 N9 G A 7 -7.818 100.984 -2.532 0.50 94.22 N
ATOM 15 C8 G A 7 -6.635 101.519 -2.989 0.50 93.07 C
ATOM 16 N7 G A 7 -5.842 101.902 -2.022 0.50 93.02 N
ATOM 17 C5 G A 7 -6.530 101.570 -0.859 0.50 93.97 C
ATOM 18 C6 G A 7 -6.185 101.766 0.494 0.50 94.32 C
ATOM 19 O6 G A 7 -5.155 102.280 0.956 0.50 94.21 O
ATOM 20 N1 G A 7 -7.188 101.301 1.347 0.50 94.97 N
ATOM 21 C2 G A 7 -8.372 100.717 0.945 0.50 95.50 C
ATOM 22 N2 G A 7 -9.251 100.351 1.927 0.50 95.83 N
ATOM 23 N3 G A 7 -8.686 100.516 -0.319 0.50 95.31 N
ATOM 24 C4 G A 7 -7.737 100.973 -1.160 0.50 94.38 C
ATOM 25 P A A 8 -11.421 104.560 -4.170 0.50 91.46 P
ATOM 26 OP1 A A 8 -12.524 105.237 -4.923 0.50 90.92 O
ATOM 27 OP2 A A 8 -10.083 105.253 -4.017 0.50 90.33 O
ATOM 28 O5' A A 8 -11.926 104.205 -2.700 0.50 93.24 O
TER
ATOM 1 O3' G B 7 -11.106 103.117 -4.814 0.50 91.76 O
ATOM 2 P A B 8 -11.421 104.560 -4.170 0.50 91.46 P
ATOM 3 OP1 A B 8 -12.524 105.237 -4.923 0.50 90.92 O
ATOM 4 OP2 A B 8 -10.083 105.253 -4.017 0.50 90.33 O
ATOM 5 O5' A B 8 -11.926 104.205 -2.700 0.50 93.24 O
ATOM 6 C5' A B 8 -12.816 103.092 -2.484 0.50 96.73 C
ATOM 7 C4' A B 8 -13.019 102.863 -1.004 0.50 98.91 C
ATOM 8 O4' A B 8 -11.797 102.372 -0.382 0.50 99.76 O
ATOM 9 C3' A B 8 -13.367 104.118 -0.222 0.50 99.93 C
ATOM 10 O3' A B 8 -14.755 104.390 -0.311 0.50100.19 O
ATOM 11 C2' A B 8 -12.914 103.786 1.198 0.50100.26 C
ATOM 12 O2' A B 8 -13.871 103.058 1.948 0.50100.13 O
ATOM 13 C1' A B 8 -11.693 102.903 0.933 0.50100.43 C
ATOM 14 N9 A B 8 -10.437 103.643 1.033 0.50101.14 N
ATOM 15 C8 A B 8 -9.722 104.218 0.008 0.50102.09 C
ATOM 16 N7 A B 8 -8.592 104.779 0.395 0.50102.61 N
ATOM 17 C5 A B 8 -8.573 104.562 1.767 0.50101.97 C
ATOM 18 C6 A B 8 -7.644 104.899 2.743 0.50101.78 C
ATOM 19 N6 A B 8 -6.494 105.515 2.456 0.50101.96 N
ATOM 20 N1 A B 8 -7.926 104.571 4.034 0.50101.61 N
ATOM 21 C2 A B 8 -9.078 103.916 4.286 0.50101.02 C
ATOM 22 N3 A B 8 -10.030 103.527 3.437 0.50100.91 N
ATOM 23 C4 A B 8 -9.714 103.885 2.179 0.50101.40 C
ATOM 24 P U B 9 -15.280 105.898 -0.130 0.50 99.97 P
ATOM 25 OP1 U B 9 -16.725 105.868 -0.534 0.50 99.36 O
ATOM 26 OP2 U B 9 -14.334 106.868 -0.790 0.50 98.29 O
ATOM 27 O5' U B 9 -15.165 106.153 1.440 0.50101.65 O
TER
ATOM 2 P G A 7 -6.557 103.379 -7.352 0.50 87.21 P
ATOM 3 OP1 G A 7 -7.228 103.909 -8.579 0.50 83.56 O
ATOM 4 OP2 G A 7 -5.602 104.251 -6.586 0.50 85.87 O
ATOM 5 O5' G A 7 -7.671 102.933 -6.297 0.50 88.91 O
ATOM 6 C5' G A 7 -8.716 101.986 -6.685 0.50 91.79 C
ATOM 7 C4' G A 7 -9.447 101.431 -5.460 0.50 93.52 C
ATOM 8 O4' G A 7 -8.615 100.494 -4.686 0.50 95.20 O
ATOM 9 C3' G A 7 -9.915 102.449 -4.434 0.50 93.93 C
ATOM 10 O3' G A 7 -11.106 103.117 -4.814 0.50 91.76 O
ATOM 11 C2' G A 7 -10.124 101.592 -3.193 0.50 95.57 C
ATOM 12 O2' G A 7 -11.392 100.947 -3.237 0.50 97.69 O
ATOM 13 C1' G A 7 -8.982 100.567 -3.315 0.50 95.26 C
ATOM 14 N9 G A 7 -7.818 100.984 -2.532 0.50 94.22 N
ATOM 15 C8 G A 7 -6.635 101.519 -2.989 0.50 93.07 C
ATOM 16 N7 G A 7 -5.842 101.902 -2.022 0.50 93.02 N
ATOM 17 C5 G A 7 -6.530 101.570 -0.859 0.50 93.97 C
ATOM 18 C6 G A 7 -6.185 101.766 0.494 0.50 94.32 C
ATOM 19 O6 G A 7 -5.155 102.280 0.956 0.50 94.21 O
ATOM 20 N1 G A 7 -7.188 101.301 1.347 0.50 94.97 N
ATOM 21 C2 G A 7 -8.372 100.717 0.945 0.50 95.50 C
ATOM 22 N2 G A 7 -9.251 100.351 1.927 0.50 95.83 N
ATOM 23 N3 G A 7 -8.686 100.516 -0.319 0.50 95.31 N
ATOM 24 C4 G A 7 -7.737 100.973 -1.160 0.50 94.38 C
ATOM 25 P A A 8 -11.421 104.560 -4.170 0.50 91.46 P
ATOM 26 OP1 A A 8 -12.524 105.237 -4.923 0.50 90.92 O
ATOM 27 OP2 A A 8 -10.083 105.253 -4.017 0.50 90.33 O
ATOM 28 O5' A A 8 -11.926 104.205 -2.700 0.50 93.24 O
TER
ATOM 1 O3' G B 7 -11.106 103.117 -4.814 0.50 91.76 O
ATOM 2 P A B 8 -11.421 104.560 -4.170 0.50 91.46 P
ATOM 3 OP1 A B 8 -12.524 105.237 -4.923 0.50 90.92 O
ATOM 4 OP2 A B 8 -10.083 105.253 -4.017 0.50 90.33 O
ATOM 5 O5' A B 8 -11.926 104.205 -2.700 0.50 93.24 O
ATOM 6 C5' A B 8 -12.816 103.092 -2.484 0.50 96.73 C
ATOM 7 C4' A B 8 -13.019 102.863 -1.004 0.50 98.91 C
ATOM 8 O4' A B 8 -11.797 102.372 -0.382 0.50 99.76 O
ATOM 9 C3' A B 8 -13.367 104.118 -0.222 0.50 99.93 C
ATOM 10 O3' A B 8 -14.755 104.390 -0.311 0.50100.19 O
ATOM 11 C2' A B 8 -12.914 103.786 1.198 0.50100.26 C
ATOM 12 O2' A B 8 -13.871 103.058 1.948 0.50100.13 O
ATOM 13 C1' A B 8 -11.693 102.903 0.933 0.50100.43 C
ATOM 14 N9 A B 8 -10.437 103.643 1.033 0.50101.14 N
ATOM 15 C8 A B 8 -9.722 104.218 0.008 0.50102.09 C
ATOM 16 N7 A B 8 -8.592 104.779 0.395 0.50102.61 N
ATOM 17 C5 A B 8 -8.573 104.562 1.767 0.50101.97 C
ATOM 18 C6 A B 8 -7.644 104.899 2.743 0.50101.78 C
ATOM 19 N6 A B 8 -6.494 105.515 2.456 0.50101.96 N
ATOM 20 N1 A B 8 -7.926 104.571 4.034 0.50101.61 N
ATOM 21 C2 A B 8 -9.078 103.916 4.286 0.50101.02 C
ATOM 22 N3 A B 8 -10.030 103.527 3.437 0.50100.91 N
ATOM 23 C4 A B 8 -9.714 103.885 2.179 0.50101.40 C
ATOM 24 P U B 9 -15.280 105.898 -0.130 0.50 99.97 P
ATOM 25 OP1 U B 9 -16.725 105.868 -0.534 0.50 99.36 O
ATOM 26 OP2 U B 9 -14.334 106.868 -0.790 0.50 98.29 O
ATOM 27 O5' U B 9 -15.165 106.153 1.440 0.50101.65 O
TER
Atoms:
OP1: (-7.228,103.909,-8.579)
OP2: (-5.602,104.251,-6.586)
C3': (-9.915,102.449,-4.434)
C1': (-8.982,100.567,-3.315)
C5': (-8.716,101.986,-6.685)
O6: (-5.155,102.280,0.956)
O4': (-8.615,100.494,-4.686)
C8: (-6.635,101.519,-2.989)
C2: (-8.372,100.717,0.945)
C6: (-6.185,101.766,0.494)
C5: (-6.530,101.570,-0.859)
C4: (-7.737,100.973,-1.160)
P: (-6.557,103.379,-7.352)
C4': (-9.447,101.431,-5.460)
C2': (-10.124,101.592,-3.193)
O2': (-11.392,100.947,-3.237)
N1: (-7.188,101.301,1.347)
N2: (-9.251,100.351,1.927)
N3: (-8.686,100.516,-0.319)
N7: (-5.842,101.902,-2.022)
N9: (-7.818,100.984,-2.532)
O5': (-7.671,102.933,-6.297)
O3': (-11.106,103.117,-4.814)
OP2: (-5.602,104.251,-6.586)
C3': (-9.915,102.449,-4.434)
C1': (-8.982,100.567,-3.315)
C5': (-8.716,101.986,-6.685)
O6: (-5.155,102.280,0.956)
O4': (-8.615,100.494,-4.686)
C8: (-6.635,101.519,-2.989)
C2: (-8.372,100.717,0.945)
C6: (-6.185,101.766,0.494)
C5: (-6.530,101.570,-0.859)
C4: (-7.737,100.973,-1.160)
P: (-6.557,103.379,-7.352)
C4': (-9.447,101.431,-5.460)
C2': (-10.124,101.592,-3.193)
O2': (-11.392,100.947,-3.237)
N1: (-7.188,101.301,1.347)
N2: (-9.251,100.351,1.927)
N3: (-8.686,100.516,-0.319)
N7: (-5.842,101.902,-2.022)
N9: (-7.818,100.984,-2.532)
O5': (-7.671,102.933,-6.297)
O3': (-11.106,103.117,-4.814)
OP1: (-12.524,105.237,-4.923)
OP2: (-10.083,105.253,-4.017)
C3': (-13.367,104.118,-0.222)
C1': (-11.693,102.903,0.933)
C5': (-12.816,103.092,-2.484)
O4': (-11.797,102.372,-0.382)
C8: (-9.722,104.218,0.008)
O2': (-13.871,103.058,1.948)
C6: (-7.644,104.899,2.743)
C5: (-8.573,104.562,1.767)
C4: (-9.714,103.885,2.179)
P: (-11.421,104.560,-4.170)
C4': (-13.019,102.863,-1.004)
C2': (-12.914,103.786,1.198)
C2: (-9.078,103.916,4.286)
N1: (-7.926,104.571,4.034)
N3: (-10.030,103.527,3.437)
N6: (-6.494,105.515,2.456)
N7: (-8.592,104.779,0.395)
N9: (-10.437,103.643,1.033)
O5': (-11.926,104.205,-2.700)
O3': (-14.755,104.390,-0.311)
OP2: (-10.083,105.253,-4.017)
C3': (-13.367,104.118,-0.222)
C1': (-11.693,102.903,0.933)
C5': (-12.816,103.092,-2.484)
O4': (-11.797,102.372,-0.382)
C8: (-9.722,104.218,0.008)
O2': (-13.871,103.058,1.948)
C6: (-7.644,104.899,2.743)
C5: (-8.573,104.562,1.767)
C4: (-9.714,103.885,2.179)
P: (-11.421,104.560,-4.170)
C4': (-13.019,102.863,-1.004)
C2': (-12.914,103.786,1.198)
C2: (-9.078,103.916,4.286)
N1: (-7.926,104.571,4.034)
N3: (-10.030,103.527,3.437)
N6: (-6.494,105.515,2.456)
N7: (-8.592,104.779,0.395)
N9: (-10.437,103.643,1.033)
O5': (-11.926,104.205,-2.700)
O3': (-14.755,104.390,-0.311)
Image (generated by PyMOL):