Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VTQ:A45:A21
Extra
PDB:
ATOM 1 O3' G A 44 1.393 5.943 -0.194 1.00 1.00 O
ATOM 2 P A A 45 1.598 6.535 1.271 1.00 1.00 P
ATOM 3 OP1 A A 45 0.766 5.787 2.257 1.00 1.00 O
ATOM 4 OP2 A A 45 1.176 7.956 1.121 1.00 1.00 O
ATOM 5 O5' A A 45 3.154 6.365 1.495 1.00 1.00 O
ATOM 6 C5' A A 45 3.703 5.773 2.691 1.00 1.00 C
ATOM 7 C4' A A 45 5.204 5.855 2.527 1.00 1.00 C
ATOM 8 O4' A A 45 5.518 6.603 1.375 1.00 1.00 O
ATOM 9 C3' A A 45 5.922 6.616 3.633 1.00 1.00 C
ATOM 10 O3' A A 45 6.097 5.848 4.814 1.00 1.00 O
ATOM 11 C2' A A 45 7.248 6.963 2.930 1.00 1.00 C
ATOM 12 O2' A A 45 8.020 5.760 2.960 1.00 1.00 O
ATOM 13 C1' A A 45 6.748 7.296 1.555 1.00 1.00 C
ATOM 14 N9 A A 45 6.446 8.731 1.405 1.00 1.00 N
ATOM 15 C8 A A 45 5.234 9.316 1.704 1.00 1.00 C
ATOM 16 N7 A A 45 5.210 10.601 1.480 1.00 1.00 N
ATOM 17 C5 A A 45 6.483 10.887 1.017 1.00 1.00 C
ATOM 18 C6 A A 45 7.080 12.097 0.598 1.00 1.00 C
ATOM 19 N6 A A 45 6.446 13.260 0.598 1.00 1.00 N
ATOM 20 N1 A A 45 8.370 12.002 0.179 1.00 1.00 N
ATOM 21 C2 A A 45 9.027 10.805 0.179 1.00 1.00 C
ATOM 22 N3 A A 45 8.521 9.629 0.553 1.00 1.00 N
ATOM 23 C4 A A 45 7.248 9.738 0.957 1.00 1.00 C
ATOM 24 P U A 46 5.295 6.141 6.174 1.00 1.00 P
ATOM 25 OP1 U A 46 5.120 4.855 6.922 1.00 1.00 O
ATOM 26 OP2 U A 46 3.944 6.603 5.756 1.00 1.00 O
ATOM 27 O5' U A 46 6.229 7.201 6.892 1.00 1.00 O
TER
ATOM 1 O3' A B 20 3.619 17.694 1.988 1.00 1.00 O
ATOM 2 P G B 21 3.637 17.442 0.404 1.00 1.00 P
ATOM 3 OP1 G B 21 2.382 17.979 -0.209 1.00 1.00 O
ATOM 4 OP2 G B 21 3.649 15.953 0.299 1.00 1.00 O
ATOM 5 O5' G B 21 4.933 18.176 -0.120 1.00 1.00 O
ATOM 6 C5' G B 21 4.939 19.604 -0.434 1.00 1.00 C
ATOM 7 C4' G B 21 6.284 19.829 -1.076 1.00 1.00 C
ATOM 8 O4' G B 21 7.273 19.190 -0.299 1.00 1.00 O
ATOM 9 C3' G B 21 6.440 19.176 -2.452 1.00 1.00 C
ATOM 10 O3' G B 21 5.844 19.931 -3.498 1.00 1.00 O
ATOM 11 C2' G B 21 7.972 19.094 -2.571 1.00 1.00 C
ATOM 12 O2' G B 21 8.436 20.373 -2.915 1.00 1.00 O
ATOM 13 C1' G B 21 8.328 18.720 -1.136 1.00 1.00 C
ATOM 14 N9 G B 21 8.491 17.265 -1.017 1.00 1.00 N
ATOM 15 C8 G B 21 7.646 16.361 -0.419 1.00 1.00 C
ATOM 16 N7 G B 21 8.075 15.123 -0.478 1.00 1.00 N
ATOM 17 C5 G B 21 9.281 15.212 -1.151 1.00 1.00 C
ATOM 18 C6 G B 21 10.227 14.219 -1.525 1.00 1.00 C
ATOM 19 O6 G B 21 10.203 13.002 -1.331 1.00 1.00 O
ATOM 20 N1 G B 21 11.313 14.729 -2.183 1.00 1.00 N
ATOM 21 C2 G B 21 11.475 16.048 -2.467 1.00 1.00 C
ATOM 22 N2 G B 21 12.597 16.368 -3.125 1.00 1.00 N
ATOM 23 N3 G B 21 10.619 17.014 -2.138 1.00 1.00 N
ATOM 24 C4 G B 21 9.546 16.524 -1.480 1.00 1.00 C
ATOM 25 P A B 22 5.234 19.101 -4.754 1.00 1.00 P
ATOM 26 OP1 A B 22 4.613 19.958 -5.801 1.00 1.00 O
ATOM 27 OP2 A B 22 4.227 18.251 -4.051 1.00 1.00 O
ATOM 28 O5' A B 22 6.537 18.360 -5.292 1.00 1.00 O
TER
ATOM 2 P A A 45 1.598 6.535 1.271 1.00 1.00 P
ATOM 3 OP1 A A 45 0.766 5.787 2.257 1.00 1.00 O
ATOM 4 OP2 A A 45 1.176 7.956 1.121 1.00 1.00 O
ATOM 5 O5' A A 45 3.154 6.365 1.495 1.00 1.00 O
ATOM 6 C5' A A 45 3.703 5.773 2.691 1.00 1.00 C
ATOM 7 C4' A A 45 5.204 5.855 2.527 1.00 1.00 C
ATOM 8 O4' A A 45 5.518 6.603 1.375 1.00 1.00 O
ATOM 9 C3' A A 45 5.922 6.616 3.633 1.00 1.00 C
ATOM 10 O3' A A 45 6.097 5.848 4.814 1.00 1.00 O
ATOM 11 C2' A A 45 7.248 6.963 2.930 1.00 1.00 C
ATOM 12 O2' A A 45 8.020 5.760 2.960 1.00 1.00 O
ATOM 13 C1' A A 45 6.748 7.296 1.555 1.00 1.00 C
ATOM 14 N9 A A 45 6.446 8.731 1.405 1.00 1.00 N
ATOM 15 C8 A A 45 5.234 9.316 1.704 1.00 1.00 C
ATOM 16 N7 A A 45 5.210 10.601 1.480 1.00 1.00 N
ATOM 17 C5 A A 45 6.483 10.887 1.017 1.00 1.00 C
ATOM 18 C6 A A 45 7.080 12.097 0.598 1.00 1.00 C
ATOM 19 N6 A A 45 6.446 13.260 0.598 1.00 1.00 N
ATOM 20 N1 A A 45 8.370 12.002 0.179 1.00 1.00 N
ATOM 21 C2 A A 45 9.027 10.805 0.179 1.00 1.00 C
ATOM 22 N3 A A 45 8.521 9.629 0.553 1.00 1.00 N
ATOM 23 C4 A A 45 7.248 9.738 0.957 1.00 1.00 C
ATOM 24 P U A 46 5.295 6.141 6.174 1.00 1.00 P
ATOM 25 OP1 U A 46 5.120 4.855 6.922 1.00 1.00 O
ATOM 26 OP2 U A 46 3.944 6.603 5.756 1.00 1.00 O
ATOM 27 O5' U A 46 6.229 7.201 6.892 1.00 1.00 O
TER
ATOM 1 O3' A B 20 3.619 17.694 1.988 1.00 1.00 O
ATOM 2 P G B 21 3.637 17.442 0.404 1.00 1.00 P
ATOM 3 OP1 G B 21 2.382 17.979 -0.209 1.00 1.00 O
ATOM 4 OP2 G B 21 3.649 15.953 0.299 1.00 1.00 O
ATOM 5 O5' G B 21 4.933 18.176 -0.120 1.00 1.00 O
ATOM 6 C5' G B 21 4.939 19.604 -0.434 1.00 1.00 C
ATOM 7 C4' G B 21 6.284 19.829 -1.076 1.00 1.00 C
ATOM 8 O4' G B 21 7.273 19.190 -0.299 1.00 1.00 O
ATOM 9 C3' G B 21 6.440 19.176 -2.452 1.00 1.00 C
ATOM 10 O3' G B 21 5.844 19.931 -3.498 1.00 1.00 O
ATOM 11 C2' G B 21 7.972 19.094 -2.571 1.00 1.00 C
ATOM 12 O2' G B 21 8.436 20.373 -2.915 1.00 1.00 O
ATOM 13 C1' G B 21 8.328 18.720 -1.136 1.00 1.00 C
ATOM 14 N9 G B 21 8.491 17.265 -1.017 1.00 1.00 N
ATOM 15 C8 G B 21 7.646 16.361 -0.419 1.00 1.00 C
ATOM 16 N7 G B 21 8.075 15.123 -0.478 1.00 1.00 N
ATOM 17 C5 G B 21 9.281 15.212 -1.151 1.00 1.00 C
ATOM 18 C6 G B 21 10.227 14.219 -1.525 1.00 1.00 C
ATOM 19 O6 G B 21 10.203 13.002 -1.331 1.00 1.00 O
ATOM 20 N1 G B 21 11.313 14.729 -2.183 1.00 1.00 N
ATOM 21 C2 G B 21 11.475 16.048 -2.467 1.00 1.00 C
ATOM 22 N2 G B 21 12.597 16.368 -3.125 1.00 1.00 N
ATOM 23 N3 G B 21 10.619 17.014 -2.138 1.00 1.00 N
ATOM 24 C4 G B 21 9.546 16.524 -1.480 1.00 1.00 C
ATOM 25 P A B 22 5.234 19.101 -4.754 1.00 1.00 P
ATOM 26 OP1 A B 22 4.613 19.958 -5.801 1.00 1.00 O
ATOM 27 OP2 A B 22 4.227 18.251 -4.051 1.00 1.00 O
ATOM 28 O5' A B 22 6.537 18.360 -5.292 1.00 1.00 O
TER
Atoms:
OP1: (0.766,5.787,2.257)
OP2: (1.176,7.956,1.121)
C3': (5.922,6.616,3.633)
C1': (6.748,7.296,1.555)
C5': (3.703,5.773,2.691)
O4': (5.518,6.603,1.375)
C8: (5.234,9.316,1.704)
O2': (8.020,5.760,2.960)
C6: (7.080,12.097,0.598)
C5: (6.483,10.887,1.017)
C4: (7.248,9.738,0.957)
P: (1.598,6.535,1.271)
C4': (5.204,5.855,2.527)
C2': (7.248,6.963,2.930)
C2: (9.027,10.805,0.179)
N1: (8.370,12.002,0.179)
N3: (8.521,9.629,0.553)
N6: (6.446,13.260,0.598)
N7: (5.210,10.601,1.480)
N9: (6.446,8.731,1.405)
O5': (3.154,6.365,1.495)
O3': (6.097,5.848,4.814)
OP2: (1.176,7.956,1.121)
C3': (5.922,6.616,3.633)
C1': (6.748,7.296,1.555)
C5': (3.703,5.773,2.691)
O4': (5.518,6.603,1.375)
C8: (5.234,9.316,1.704)
O2': (8.020,5.760,2.960)
C6: (7.080,12.097,0.598)
C5: (6.483,10.887,1.017)
C4: (7.248,9.738,0.957)
P: (1.598,6.535,1.271)
C4': (5.204,5.855,2.527)
C2': (7.248,6.963,2.930)
C2: (9.027,10.805,0.179)
N1: (8.370,12.002,0.179)
N3: (8.521,9.629,0.553)
N6: (6.446,13.260,0.598)
N7: (5.210,10.601,1.480)
N9: (6.446,8.731,1.405)
O5': (3.154,6.365,1.495)
O3': (6.097,5.848,4.814)
OP1: (2.382,17.979,-0.209)
OP2: (3.649,15.953,0.299)
C3': (6.440,19.176,-2.452)
C1': (8.328,18.720,-1.136)
C5': (4.939,19.604,-0.434)
O6: (10.203,13.002,-1.331)
O4': (7.273,19.190,-0.299)
C8: (7.646,16.361,-0.419)
C2: (11.475,16.048,-2.467)
C6: (10.227,14.219,-1.525)
C5: (9.281,15.212,-1.151)
C4: (9.546,16.524,-1.480)
P: (3.637,17.442,0.404)
C4': (6.284,19.829,-1.076)
C2': (7.972,19.094,-2.571)
O2': (8.436,20.373,-2.915)
N1: (11.313,14.729,-2.183)
N2: (12.597,16.368,-3.125)
N3: (10.619,17.014,-2.138)
N7: (8.075,15.123,-0.478)
N9: (8.491,17.265,-1.017)
O5': (4.933,18.176,-0.120)
O3': (5.844,19.931,-3.498)
OP2: (3.649,15.953,0.299)
C3': (6.440,19.176,-2.452)
C1': (8.328,18.720,-1.136)
C5': (4.939,19.604,-0.434)
O6: (10.203,13.002,-1.331)
O4': (7.273,19.190,-0.299)
C8: (7.646,16.361,-0.419)
C2: (11.475,16.048,-2.467)
C6: (10.227,14.219,-1.525)
C5: (9.281,15.212,-1.151)
C4: (9.546,16.524,-1.480)
P: (3.637,17.442,0.404)
C4': (6.284,19.829,-1.076)
C2': (7.972,19.094,-2.571)
O2': (8.436,20.373,-2.915)
N1: (11.313,14.729,-2.183)
N2: (12.597,16.368,-3.125)
N3: (10.619,17.014,-2.138)
N7: (8.075,15.123,-0.478)
N9: (8.491,17.265,-1.017)
O5': (4.933,18.176,-0.120)
O3': (5.844,19.931,-3.498)
Image (generated by PyMOL):