Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A423:A224
Extra
PDB:
ATOM 1 O3' U A 422 66.858 115.831 16.390 1.00 50.82 O
ATOM 2 P A A 423 65.841 115.502 17.597 1.00 51.48 P
ATOM 3 OP1 A A 423 66.109 116.551 18.590 1.00 51.48 O
ATOM 4 OP2 A A 423 65.918 114.067 17.994 1.00 50.90 O
ATOM 5 O5' A A 423 64.386 115.749 16.992 1.00 51.91 O
ATOM 6 C5' A A 423 64.064 116.980 16.313 1.00 52.75 C
ATOM 7 C4' A A 423 62.774 116.831 15.543 1.00 53.61 C
ATOM 8 O4' A A 423 62.929 115.807 14.532 1.00 54.71 O
ATOM 9 C3' A A 423 61.603 116.388 16.396 1.00 54.74 C
ATOM 10 O3' A A 423 60.944 117.525 16.945 1.00 55.17 O
ATOM 11 C2' A A 423 60.746 115.566 15.434 1.00 55.23 C
ATOM 12 O2' A A 423 59.899 116.340 14.604 1.00 57.58 O
ATOM 13 C1' A A 423 61.820 114.927 14.554 1.00 54.83 C
ATOM 14 N9 A A 423 62.311 113.608 14.960 1.00 54.79 N
ATOM 15 C8 A A 423 63.523 113.282 15.540 1.00 54.13 C
ATOM 16 N7 A A 423 63.688 111.995 15.735 1.00 53.75 N
ATOM 17 C5 A A 423 62.506 111.436 15.264 1.00 54.67 C
ATOM 18 C6 A A 423 62.052 110.106 15.177 1.00 54.90 C
ATOM 19 N6 A A 423 62.756 109.053 15.586 1.00 54.88 N
ATOM 20 N1 A A 423 60.829 109.895 14.650 1.00 55.77 N
ATOM 21 C2 A A 423 60.112 110.953 14.246 1.00 56.76 C
ATOM 22 N3 A A 423 60.423 112.246 14.275 1.00 55.72 N
ATOM 23 C4 A A 423 61.646 112.422 14.796 1.00 54.63 C
ATOM 24 P A A 424 60.162 117.387 18.336 1.00 55.23 P
ATOM 25 OP1 A A 424 59.214 118.520 18.520 1.00 56.08 O
ATOM 26 OP2 A A 424 61.152 117.085 19.395 1.00 56.55 O
ATOM 27 O5' A A 424 59.264 116.111 18.067 1.00 55.25 O
TER
ATOM 1 O3' C B 223 58.292 108.588 12.522 1.00 54.15 O
ATOM 2 P A B 224 58.533 108.070 11.013 1.00 52.91 P
ATOM 3 OP1 A B 224 58.848 109.260 10.189 1.00 53.38 O
ATOM 4 OP2 A B 224 57.443 107.146 10.600 1.00 53.16 O
ATOM 5 O5' A B 224 59.847 107.193 11.114 1.00 51.08 O
ATOM 6 C5' A B 224 60.355 106.454 9.991 1.00 50.44 C
ATOM 7 C4' A B 224 61.814 106.243 10.200 1.00 50.02 C
ATOM 8 O4' A B 224 62.452 107.545 10.103 1.00 50.04 O
ATOM 9 C3' A B 224 62.080 105.750 11.619 1.00 50.97 C
ATOM 10 O3' A B 224 63.321 105.056 11.694 1.00 53.36 O
ATOM 11 C2' A B 224 62.207 107.066 12.382 1.00 51.03 C
ATOM 12 O2' A B 224 62.921 106.965 13.594 1.00 51.32 O
ATOM 13 C1' A B 224 62.971 107.909 11.367 1.00 50.61 C
ATOM 14 N9 A B 224 62.818 109.350 11.540 1.00 49.90 N
ATOM 15 C8 A B 224 61.694 110.122 11.357 1.00 48.99 C
ATOM 16 N7 A B 224 61.898 111.406 11.539 1.00 48.18 N
ATOM 17 C5 A B 224 63.241 111.483 11.883 1.00 48.40 C
ATOM 18 C6 A B 224 64.070 112.569 12.199 1.00 48.10 C
ATOM 19 N6 A B 224 63.646 113.833 12.222 1.00 47.87 N
ATOM 20 N1 A B 224 65.367 112.308 12.495 1.00 48.34 N
ATOM 21 C2 A B 224 65.790 111.035 12.474 1.00 48.96 C
ATOM 22 N3 A B 224 65.105 109.922 12.193 1.00 49.33 N
ATOM 23 C4 A B 224 63.819 110.221 11.901 1.00 49.56 C
ATOM 24 P G B 225 63.546 103.709 10.852 1.00 55.04 P
ATOM 25 OP1 G B 225 62.293 103.494 10.073 1.00 54.87 O
ATOM 26 OP2 G B 225 64.037 102.641 11.759 1.00 56.30 O
ATOM 27 O5' G B 225 64.733 104.101 9.860 1.00 55.80 O
TER
ATOM 2 P A A 423 65.841 115.502 17.597 1.00 51.48 P
ATOM 3 OP1 A A 423 66.109 116.551 18.590 1.00 51.48 O
ATOM 4 OP2 A A 423 65.918 114.067 17.994 1.00 50.90 O
ATOM 5 O5' A A 423 64.386 115.749 16.992 1.00 51.91 O
ATOM 6 C5' A A 423 64.064 116.980 16.313 1.00 52.75 C
ATOM 7 C4' A A 423 62.774 116.831 15.543 1.00 53.61 C
ATOM 8 O4' A A 423 62.929 115.807 14.532 1.00 54.71 O
ATOM 9 C3' A A 423 61.603 116.388 16.396 1.00 54.74 C
ATOM 10 O3' A A 423 60.944 117.525 16.945 1.00 55.17 O
ATOM 11 C2' A A 423 60.746 115.566 15.434 1.00 55.23 C
ATOM 12 O2' A A 423 59.899 116.340 14.604 1.00 57.58 O
ATOM 13 C1' A A 423 61.820 114.927 14.554 1.00 54.83 C
ATOM 14 N9 A A 423 62.311 113.608 14.960 1.00 54.79 N
ATOM 15 C8 A A 423 63.523 113.282 15.540 1.00 54.13 C
ATOM 16 N7 A A 423 63.688 111.995 15.735 1.00 53.75 N
ATOM 17 C5 A A 423 62.506 111.436 15.264 1.00 54.67 C
ATOM 18 C6 A A 423 62.052 110.106 15.177 1.00 54.90 C
ATOM 19 N6 A A 423 62.756 109.053 15.586 1.00 54.88 N
ATOM 20 N1 A A 423 60.829 109.895 14.650 1.00 55.77 N
ATOM 21 C2 A A 423 60.112 110.953 14.246 1.00 56.76 C
ATOM 22 N3 A A 423 60.423 112.246 14.275 1.00 55.72 N
ATOM 23 C4 A A 423 61.646 112.422 14.796 1.00 54.63 C
ATOM 24 P A A 424 60.162 117.387 18.336 1.00 55.23 P
ATOM 25 OP1 A A 424 59.214 118.520 18.520 1.00 56.08 O
ATOM 26 OP2 A A 424 61.152 117.085 19.395 1.00 56.55 O
ATOM 27 O5' A A 424 59.264 116.111 18.067 1.00 55.25 O
TER
ATOM 1 O3' C B 223 58.292 108.588 12.522 1.00 54.15 O
ATOM 2 P A B 224 58.533 108.070 11.013 1.00 52.91 P
ATOM 3 OP1 A B 224 58.848 109.260 10.189 1.00 53.38 O
ATOM 4 OP2 A B 224 57.443 107.146 10.600 1.00 53.16 O
ATOM 5 O5' A B 224 59.847 107.193 11.114 1.00 51.08 O
ATOM 6 C5' A B 224 60.355 106.454 9.991 1.00 50.44 C
ATOM 7 C4' A B 224 61.814 106.243 10.200 1.00 50.02 C
ATOM 8 O4' A B 224 62.452 107.545 10.103 1.00 50.04 O
ATOM 9 C3' A B 224 62.080 105.750 11.619 1.00 50.97 C
ATOM 10 O3' A B 224 63.321 105.056 11.694 1.00 53.36 O
ATOM 11 C2' A B 224 62.207 107.066 12.382 1.00 51.03 C
ATOM 12 O2' A B 224 62.921 106.965 13.594 1.00 51.32 O
ATOM 13 C1' A B 224 62.971 107.909 11.367 1.00 50.61 C
ATOM 14 N9 A B 224 62.818 109.350 11.540 1.00 49.90 N
ATOM 15 C8 A B 224 61.694 110.122 11.357 1.00 48.99 C
ATOM 16 N7 A B 224 61.898 111.406 11.539 1.00 48.18 N
ATOM 17 C5 A B 224 63.241 111.483 11.883 1.00 48.40 C
ATOM 18 C6 A B 224 64.070 112.569 12.199 1.00 48.10 C
ATOM 19 N6 A B 224 63.646 113.833 12.222 1.00 47.87 N
ATOM 20 N1 A B 224 65.367 112.308 12.495 1.00 48.34 N
ATOM 21 C2 A B 224 65.790 111.035 12.474 1.00 48.96 C
ATOM 22 N3 A B 224 65.105 109.922 12.193 1.00 49.33 N
ATOM 23 C4 A B 224 63.819 110.221 11.901 1.00 49.56 C
ATOM 24 P G B 225 63.546 103.709 10.852 1.00 55.04 P
ATOM 25 OP1 G B 225 62.293 103.494 10.073 1.00 54.87 O
ATOM 26 OP2 G B 225 64.037 102.641 11.759 1.00 56.30 O
ATOM 27 O5' G B 225 64.733 104.101 9.860 1.00 55.80 O
TER
Atoms:
OP1: (66.109,116.551,18.590)
OP2: (65.918,114.067,17.994)
C3': (61.603,116.388,16.396)
C1': (61.820,114.927,14.554)
C5': (64.064,116.980,16.313)
O4': (62.929,115.807,14.532)
C8: (63.523,113.282,15.540)
O2': (59.899,116.340,14.604)
C6: (62.052,110.106,15.177)
C5: (62.506,111.436,15.264)
C4: (61.646,112.422,14.796)
P: (65.841,115.502,17.597)
C4': (62.774,116.831,15.543)
C2': (60.746,115.566,15.434)
C2: (60.112,110.953,14.246)
N1: (60.829,109.895,14.650)
N3: (60.423,112.246,14.275)
N6: (62.756,109.053,15.586)
N7: (63.688,111.995,15.735)
N9: (62.311,113.608,14.960)
O5': (64.386,115.749,16.992)
O3': (60.944,117.525,16.945)
OP2: (65.918,114.067,17.994)
C3': (61.603,116.388,16.396)
C1': (61.820,114.927,14.554)
C5': (64.064,116.980,16.313)
O4': (62.929,115.807,14.532)
C8: (63.523,113.282,15.540)
O2': (59.899,116.340,14.604)
C6: (62.052,110.106,15.177)
C5: (62.506,111.436,15.264)
C4: (61.646,112.422,14.796)
P: (65.841,115.502,17.597)
C4': (62.774,116.831,15.543)
C2': (60.746,115.566,15.434)
C2: (60.112,110.953,14.246)
N1: (60.829,109.895,14.650)
N3: (60.423,112.246,14.275)
N6: (62.756,109.053,15.586)
N7: (63.688,111.995,15.735)
N9: (62.311,113.608,14.960)
O5': (64.386,115.749,16.992)
O3': (60.944,117.525,16.945)
OP1: (58.848,109.260,10.189)
OP2: (57.443,107.146,10.600)
C3': (62.080,105.750,11.619)
C1': (62.971,107.909,11.367)
C5': (60.355,106.454,9.991)
O4': (62.452,107.545,10.103)
C8: (61.694,110.122,11.357)
O2': (62.921,106.965,13.594)
C6: (64.070,112.569,12.199)
C5: (63.241,111.483,11.883)
C4: (63.819,110.221,11.901)
P: (58.533,108.070,11.013)
C4': (61.814,106.243,10.200)
C2': (62.207,107.066,12.382)
C2: (65.790,111.035,12.474)
N1: (65.367,112.308,12.495)
N3: (65.105,109.922,12.193)
N6: (63.646,113.833,12.222)
N7: (61.898,111.406,11.539)
N9: (62.818,109.350,11.540)
O5': (59.847,107.193,11.114)
O3': (63.321,105.056,11.694)
OP2: (57.443,107.146,10.600)
C3': (62.080,105.750,11.619)
C1': (62.971,107.909,11.367)
C5': (60.355,106.454,9.991)
O4': (62.452,107.545,10.103)
C8: (61.694,110.122,11.357)
O2': (62.921,106.965,13.594)
C6: (64.070,112.569,12.199)
C5: (63.241,111.483,11.883)
C4: (63.819,110.221,11.901)
P: (58.533,108.070,11.013)
C4': (61.814,106.243,10.200)
C2': (62.207,107.066,12.382)
C2: (65.790,111.035,12.474)
N1: (65.367,112.308,12.495)
N3: (65.105,109.922,12.193)
N6: (63.646,113.833,12.222)
N7: (61.898,111.406,11.539)
N9: (62.818,109.350,11.540)
O5': (59.847,107.193,11.114)
O3': (63.321,105.056,11.694)
Image (generated by PyMOL):