ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2QUS:B34:B12

Extra

PDB:
ATOM 1 O3' G A 33 5.112 -21.109 13.317 1.00 60.22 O
ATOM 2 P A A 34 4.346 -19.924 14.028 1.00 61.54 P
ATOM 3 OP1 A A 34 3.379 -19.356 13.039 1.00 62.36 O
ATOM 4 OP2 A A 34 5.377 -19.009 14.584 1.00 61.75 O
ATOM 5 O5' A A 34 3.580 -20.740 15.181 1.00 58.39 O
ATOM 6 C5' A A 34 2.596 -21.702 14.802 1.00 57.39 C
ATOM 7 C4' A A 34 2.242 -22.683 15.911 1.00 56.97 C
ATOM 8 O4' A A 34 3.340 -23.599 16.156 1.00 56.22 O
ATOM 9 C3' A A 34 2.002 -22.071 17.277 1.00 57.53 C
ATOM 10 O3' A A 34 0.688 -21.576 17.341 1.00 60.79 O
ATOM 11 C2' A A 34 2.217 -23.261 18.206 1.00 55.78 C
ATOM 12 O2' A A 34 1.122 -24.148 18.278 1.00 54.74 O
ATOM 13 C1' A A 34 3.401 -23.932 17.529 1.00 53.97 C
ATOM 14 N9 A A 34 4.679 -23.463 18.061 1.00 53.32 N
ATOM 15 C8 A A 34 5.434 -22.432 17.578 1.00 52.73 C
ATOM 16 N7 A A 34 6.528 -22.221 18.257 1.00 52.68 N
ATOM 17 C5 A A 34 6.490 -23.176 19.257 1.00 52.74 C
ATOM 18 C6 A A 34 7.378 -23.486 20.308 1.00 53.32 C
ATOM 19 N6 A A 34 8.504 -22.806 20.496 1.00 53.16 N
ATOM 20 N1 A A 34 7.066 -24.506 21.149 1.00 52.99 N
ATOM 21 C2 A A 34 5.923 -25.177 20.932 1.00 53.04 C
ATOM 22 N3 A A 34 5.011 -24.980 19.969 1.00 53.31 N
ATOM 23 C4 A A 34 5.355 -23.955 19.157 1.00 52.87 C
ATOM 24 P U A 35 0.409 -20.135 17.956 1.00 62.46 P
ATOM 25 OP1 U A 35 -1.047 -19.893 17.786 1.00 61.47 O
ATOM 26 OP2 U A 35 1.417 -19.171 17.414 1.00 61.92 O
ATOM 27 O5' U A 35 0.718 -20.406 19.497 1.00 62.10 O
TER

ATOM 1 O3' C B 11 6.246 -28.035 22.693 1.00 58.77 O
ATOM 2 P A B 12 5.016 -28.437 23.636 1.00 60.32 P
ATOM 3 OP1 A B 12 5.474 -29.443 24.624 1.00 59.72 O
ATOM 4 OP2 A B 12 3.874 -28.757 22.745 1.00 62.12 O
ATOM 5 O5' A B 12 4.656 -27.058 24.363 1.00 58.10 O
ATOM 6 C5' A B 12 5.574 -26.422 25.253 1.00 55.14 C
ATOM 7 C4' A B 12 6.531 -25.564 24.459 1.00 53.36 C
ATOM 8 O4' A B 12 5.992 -24.234 24.380 1.00 53.86 O
ATOM 9 C3' A B 12 7.879 -25.340 25.097 1.00 52.90 C
ATOM 10 O3' A B 12 8.734 -26.425 24.833 1.00 51.37 O
ATOM 11 C2' A B 12 8.342 -24.056 24.422 1.00 53.97 C
ATOM 12 O2' A B 12 8.895 -24.267 23.123 1.00 54.04 O
ATOM 13 C1' A B 12 7.026 -23.279 24.371 1.00 53.78 C
ATOM 14 N9 A B 12 6.761 -22.321 25.451 1.00 54.37 N
ATOM 15 C8 A B 12 5.873 -22.448 26.486 1.00 54.02 C
ATOM 16 N7 A B 12 5.837 -21.410 27.291 1.00 54.06 N
ATOM 17 C5 A B 12 6.768 -20.528 26.760 1.00 54.00 C
ATOM 18 C6 A B 12 7.213 -19.234 27.143 1.00 54.04 C
ATOM 19 N6 A B 12 6.768 -18.548 28.203 1.00 54.21 N
ATOM 20 N1 A B 12 8.153 -18.642 26.378 1.00 54.06 N
ATOM 21 C2 A B 12 8.615 -19.297 25.295 1.00 54.17 C
ATOM 22 N3 A B 12 8.284 -20.504 24.835 1.00 53.97 N
ATOM 23 C4 A B 12 7.344 -21.075 25.618 1.00 54.50 C
ATOM 24 P C B 13 9.487 -27.052 26.090 1.00 50.45 P
ATOM 25 OP1 C B 13 10.024 -28.373 25.724 1.00 52.30 O
ATOM 26 OP2 C B 13 8.595 -26.975 27.266 1.00 51.30 O
ATOM 27 O5' C B 13 10.726 -26.037 26.211 1.00 52.27 O
TER

Atoms:
OP1: (3.379,-19.356,13.039)
OP2: (5.377,-19.009,14.584)
C3': (2.002,-22.071,17.277)
C1': (3.401,-23.932,17.529)
C5': (2.596,-21.702,14.802)
O4': (3.340,-23.599,16.156)
C8: (5.434,-22.432,17.578)
O2': (1.122,-24.148,18.278)
C6: (7.378,-23.486,20.308)
C5: (6.490,-23.176,19.257)
C4: (5.355,-23.955,19.157)
P: (4.346,-19.924,14.028)
C4': (2.242,-22.683,15.911)
C2': (2.217,-23.261,18.206)
C2: (5.923,-25.177,20.932)
N1: (7.066,-24.506,21.149)
N3: (5.011,-24.980,19.969)
N6: (8.504,-22.806,20.496)
N7: (6.528,-22.221,18.257)
N9: (4.679,-23.463,18.061)
O5': (3.580,-20.740,15.181)
O3': (0.688,-21.576,17.341)
OP1: (5.474,-29.443,24.624)
OP2: (3.874,-28.757,22.745)
C3': (7.879,-25.340,25.097)
C1': (7.026,-23.279,24.371)
C5': (5.574,-26.422,25.253)
O4': (5.992,-24.234,24.380)
C8: (5.873,-22.448,26.486)
O2': (8.895,-24.267,23.123)
C6: (7.213,-19.234,27.143)
C5: (6.768,-20.528,26.760)
C4: (7.344,-21.075,25.618)
P: (5.016,-28.437,23.636)
C4': (6.531,-25.564,24.459)
C2': (8.342,-24.056,24.422)
C2: (8.615,-19.297,25.295)
N1: (8.153,-18.642,26.378)
N3: (8.284,-20.504,24.835)
N6: (6.768,-18.548,28.203)
N7: (5.837,-21.410,27.291)
N9: (6.761,-22.321,25.451)
O5': (4.656,-27.058,24.363)
O3': (8.734,-26.425,24.833)
Image (generated by PyMOL):
PyMOL image
show in jmol