Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5B:21005:2959
Extra
PDB:
ATOM 1 O3' C A1004 -36.976 11.711 99.251 1.00 64.32 O
ATOM 2 P A A1005 -38.216 12.651 98.886 1.00 59.86 P
ATOM 3 OP1 A A1005 -38.236 12.789 97.416 1.00 59.28 O
ATOM 4 OP2 A A1005 -38.124 13.877 99.716 1.00 59.74 O
ATOM 5 O5' A A1005 -39.438 11.791 99.381 1.00 60.50 O
ATOM 6 C5' A A1005 -40.177 10.978 98.489 1.00 60.55 C
ATOM 7 C4' A A1005 -41.469 10.546 99.115 1.00 61.13 C
ATOM 8 O4' A A1005 -41.219 10.161 100.501 1.00 61.79 O
ATOM 9 C3' A A1005 -42.542 11.624 99.184 1.00 60.92 C
ATOM 10 O3' A A1005 -43.797 10.992 99.134 1.00 61.35 O
ATOM 11 C2' A A1005 -42.332 12.195 100.575 1.00 61.23 C
ATOM 12 O2' A A1005 -43.427 12.863 101.103 1.00 61.39 O
ATOM 13 C1' A A1005 -42.036 10.941 101.354 1.00 61.97 C
ATOM 14 N9 A A1005 -41.326 11.181 102.598 1.00 62.31 N
ATOM 15 C8 A A1005 -40.353 12.112 102.818 1.00 61.93 C
ATOM 16 N7 A A1005 -39.889 12.121 104.055 1.00 62.44 N
ATOM 17 C5 A A1005 -40.606 11.117 104.684 1.00 63.21 C
ATOM 18 C6 A A1005 -40.576 10.647 105.998 1.00 64.04 C
ATOM 19 N6 A A1005 -39.782 11.129 106.951 1.00 64.25 N
ATOM 20 N1 A A1005 -41.397 9.649 106.302 1.00 64.71 N
ATOM 21 C2 A A1005 -42.201 9.189 105.337 1.00 64.52 C
ATOM 22 N3 A A1005 -42.334 9.545 104.070 1.00 63.78 N
ATOM 23 C4 A A1005 -41.492 10.533 103.796 1.00 63.13 C
ATOM 24 P U A1006 -45.035 11.719 98.453 1.00 54.17 P
ATOM 25 OP1 U A1006 -44.523 12.941 97.782 1.00 53.40 O
ATOM 26 OP2 U A1006 -46.098 11.880 99.524 1.00 54.74 O
ATOM 27 O5' U A1006 -45.514 10.647 97.365 1.00 54.27 O
TER
ATOM 1 O3' G B 958 -45.267 6.097 108.181 1.00 63.96 O
ATOM 2 P A B 959 -43.911 5.249 108.032 1.00 63.78 P
ATOM 3 OP1 A B 959 -43.230 5.290 109.355 1.00 64.39 O
ATOM 4 OP2 A B 959 -43.181 5.754 106.832 1.00 62.77 O
ATOM 5 O5' A B 959 -44.461 3.775 107.749 1.00 64.43 O
ATOM 6 C5' A B 959 -45.570 3.259 108.484 1.00 65.30 C
ATOM 7 C4' A B 959 -46.058 1.946 107.921 1.00 65.76 C
ATOM 8 O4' A B 959 -46.911 2.170 106.772 1.00 65.19 O
ATOM 9 C3' A B 959 -44.991 1.015 107.398 1.00 65.77 C
ATOM 10 O3' A B 959 -44.355 0.303 108.425 1.00 66.62 O
ATOM 11 C2' A B 959 -45.773 0.119 106.468 1.00 65.90 C
ATOM 12 O2' A B 959 -46.480 -0.839 107.235 1.00 66.99 O
ATOM 13 C1' A B 959 -46.778 1.102 105.872 1.00 65.25 C
ATOM 14 N9 A B 959 -46.346 1.642 104.572 1.00 64.23 N
ATOM 15 C8 A B 959 -45.784 2.859 104.319 1.00 63.36 C
ATOM 16 N7 A B 959 -45.529 3.091 103.057 1.00 62.60 N
ATOM 17 C5 A B 959 -45.974 1.957 102.435 1.00 62.98 C
ATOM 18 C6 A B 959 -45.990 1.584 101.096 1.00 62.59 C
ATOM 19 N6 A B 959 -45.531 2.350 100.121 1.00 61.70 N
ATOM 20 N1 A B 959 -46.483 0.380 100.778 1.00 63.19 N
ATOM 21 C2 A B 959 -46.925 -0.404 101.767 1.00 64.14 C
ATOM 22 N3 A B 959 -46.973 -0.162 103.074 1.00 64.61 N
ATOM 23 C4 A B 959 -46.473 1.054 103.346 1.00 63.97 C
ATOM 24 P A B 960 -42.814 -0.092 108.284 1.00 67.94 P
ATOM 25 OP1 A B 960 -42.540 -1.155 109.293 1.00 69.09 O
ATOM 26 OP2 A B 960 -42.063 1.150 108.358 1.00 67.19 O
ATOM 27 O5' A B 960 -42.740 -0.714 106.821 1.00 67.47 O
TER
ATOM 2 P A A1005 -38.216 12.651 98.886 1.00 59.86 P
ATOM 3 OP1 A A1005 -38.236 12.789 97.416 1.00 59.28 O
ATOM 4 OP2 A A1005 -38.124 13.877 99.716 1.00 59.74 O
ATOM 5 O5' A A1005 -39.438 11.791 99.381 1.00 60.50 O
ATOM 6 C5' A A1005 -40.177 10.978 98.489 1.00 60.55 C
ATOM 7 C4' A A1005 -41.469 10.546 99.115 1.00 61.13 C
ATOM 8 O4' A A1005 -41.219 10.161 100.501 1.00 61.79 O
ATOM 9 C3' A A1005 -42.542 11.624 99.184 1.00 60.92 C
ATOM 10 O3' A A1005 -43.797 10.992 99.134 1.00 61.35 O
ATOM 11 C2' A A1005 -42.332 12.195 100.575 1.00 61.23 C
ATOM 12 O2' A A1005 -43.427 12.863 101.103 1.00 61.39 O
ATOM 13 C1' A A1005 -42.036 10.941 101.354 1.00 61.97 C
ATOM 14 N9 A A1005 -41.326 11.181 102.598 1.00 62.31 N
ATOM 15 C8 A A1005 -40.353 12.112 102.818 1.00 61.93 C
ATOM 16 N7 A A1005 -39.889 12.121 104.055 1.00 62.44 N
ATOM 17 C5 A A1005 -40.606 11.117 104.684 1.00 63.21 C
ATOM 18 C6 A A1005 -40.576 10.647 105.998 1.00 64.04 C
ATOM 19 N6 A A1005 -39.782 11.129 106.951 1.00 64.25 N
ATOM 20 N1 A A1005 -41.397 9.649 106.302 1.00 64.71 N
ATOM 21 C2 A A1005 -42.201 9.189 105.337 1.00 64.52 C
ATOM 22 N3 A A1005 -42.334 9.545 104.070 1.00 63.78 N
ATOM 23 C4 A A1005 -41.492 10.533 103.796 1.00 63.13 C
ATOM 24 P U A1006 -45.035 11.719 98.453 1.00 54.17 P
ATOM 25 OP1 U A1006 -44.523 12.941 97.782 1.00 53.40 O
ATOM 26 OP2 U A1006 -46.098 11.880 99.524 1.00 54.74 O
ATOM 27 O5' U A1006 -45.514 10.647 97.365 1.00 54.27 O
TER
ATOM 1 O3' G B 958 -45.267 6.097 108.181 1.00 63.96 O
ATOM 2 P A B 959 -43.911 5.249 108.032 1.00 63.78 P
ATOM 3 OP1 A B 959 -43.230 5.290 109.355 1.00 64.39 O
ATOM 4 OP2 A B 959 -43.181 5.754 106.832 1.00 62.77 O
ATOM 5 O5' A B 959 -44.461 3.775 107.749 1.00 64.43 O
ATOM 6 C5' A B 959 -45.570 3.259 108.484 1.00 65.30 C
ATOM 7 C4' A B 959 -46.058 1.946 107.921 1.00 65.76 C
ATOM 8 O4' A B 959 -46.911 2.170 106.772 1.00 65.19 O
ATOM 9 C3' A B 959 -44.991 1.015 107.398 1.00 65.77 C
ATOM 10 O3' A B 959 -44.355 0.303 108.425 1.00 66.62 O
ATOM 11 C2' A B 959 -45.773 0.119 106.468 1.00 65.90 C
ATOM 12 O2' A B 959 -46.480 -0.839 107.235 1.00 66.99 O
ATOM 13 C1' A B 959 -46.778 1.102 105.872 1.00 65.25 C
ATOM 14 N9 A B 959 -46.346 1.642 104.572 1.00 64.23 N
ATOM 15 C8 A B 959 -45.784 2.859 104.319 1.00 63.36 C
ATOM 16 N7 A B 959 -45.529 3.091 103.057 1.00 62.60 N
ATOM 17 C5 A B 959 -45.974 1.957 102.435 1.00 62.98 C
ATOM 18 C6 A B 959 -45.990 1.584 101.096 1.00 62.59 C
ATOM 19 N6 A B 959 -45.531 2.350 100.121 1.00 61.70 N
ATOM 20 N1 A B 959 -46.483 0.380 100.778 1.00 63.19 N
ATOM 21 C2 A B 959 -46.925 -0.404 101.767 1.00 64.14 C
ATOM 22 N3 A B 959 -46.973 -0.162 103.074 1.00 64.61 N
ATOM 23 C4 A B 959 -46.473 1.054 103.346 1.00 63.97 C
ATOM 24 P A B 960 -42.814 -0.092 108.284 1.00 67.94 P
ATOM 25 OP1 A B 960 -42.540 -1.155 109.293 1.00 69.09 O
ATOM 26 OP2 A B 960 -42.063 1.150 108.358 1.00 67.19 O
ATOM 27 O5' A B 960 -42.740 -0.714 106.821 1.00 67.47 O
TER
Atoms:
OP1: (-38.236,12.789,97.416)
OP2: (-38.124,13.877,99.716)
C3': (-42.542,11.624,99.184)
C1': (-42.036,10.941,101.354)
C5': (-40.177,10.978,98.489)
O4': (-41.219,10.161,100.501)
C8: (-40.353,12.112,102.818)
O2': (-43.427,12.863,101.103)
C6: (-40.576,10.647,105.998)
C5: (-40.606,11.117,104.684)
C4: (-41.492,10.533,103.796)
P: (-38.216,12.651,98.886)
C4': (-41.469,10.546,99.115)
C2': (-42.332,12.195,100.575)
C2: (-42.201,9.189,105.337)
N1: (-41.397,9.649,106.302)
N3: (-42.334,9.545,104.070)
N6: (-39.782,11.129,106.951)
N7: (-39.889,12.121,104.055)
N9: (-41.326,11.181,102.598)
O5': (-39.438,11.791,99.381)
O3': (-43.797,10.992,99.134)
OP2: (-38.124,13.877,99.716)
C3': (-42.542,11.624,99.184)
C1': (-42.036,10.941,101.354)
C5': (-40.177,10.978,98.489)
O4': (-41.219,10.161,100.501)
C8: (-40.353,12.112,102.818)
O2': (-43.427,12.863,101.103)
C6: (-40.576,10.647,105.998)
C5: (-40.606,11.117,104.684)
C4: (-41.492,10.533,103.796)
P: (-38.216,12.651,98.886)
C4': (-41.469,10.546,99.115)
C2': (-42.332,12.195,100.575)
C2: (-42.201,9.189,105.337)
N1: (-41.397,9.649,106.302)
N3: (-42.334,9.545,104.070)
N6: (-39.782,11.129,106.951)
N7: (-39.889,12.121,104.055)
N9: (-41.326,11.181,102.598)
O5': (-39.438,11.791,99.381)
O3': (-43.797,10.992,99.134)
OP1: (-43.230,5.290,109.355)
OP2: (-43.181,5.754,106.832)
C3': (-44.991,1.015,107.398)
C1': (-46.778,1.102,105.872)
C5': (-45.570,3.259,108.484)
O4': (-46.911,2.170,106.772)
C8: (-45.784,2.859,104.319)
O2': (-46.480,-0.839,107.235)
C6: (-45.990,1.584,101.096)
C5: (-45.974,1.957,102.435)
C4: (-46.473,1.054,103.346)
P: (-43.911,5.249,108.032)
C4': (-46.058,1.946,107.921)
C2': (-45.773,0.119,106.468)
C2: (-46.925,-0.404,101.767)
N1: (-46.483,0.380,100.778)
N3: (-46.973,-0.162,103.074)
N6: (-45.531,2.350,100.121)
N7: (-45.529,3.091,103.057)
N9: (-46.346,1.642,104.572)
O5': (-44.461,3.775,107.749)
O3': (-44.355,0.303,108.425)
OP2: (-43.181,5.754,106.832)
C3': (-44.991,1.015,107.398)
C1': (-46.778,1.102,105.872)
C5': (-45.570,3.259,108.484)
O4': (-46.911,2.170,106.772)
C8: (-45.784,2.859,104.319)
O2': (-46.480,-0.839,107.235)
C6: (-45.990,1.584,101.096)
C5: (-45.974,1.957,102.435)
C4: (-46.473,1.054,103.346)
P: (-43.911,5.249,108.032)
C4': (-46.058,1.946,107.921)
C2': (-45.773,0.119,106.468)
C2: (-46.925,-0.404,101.767)
N1: (-46.483,0.380,100.778)
N3: (-46.973,-0.162,103.074)
N6: (-45.531,2.350,100.121)
N7: (-45.529,3.091,103.057)
N9: (-46.346,1.642,104.572)
O5': (-44.461,3.775,107.749)
O3': (-44.355,0.303,108.425)
Image (generated by PyMOL):