Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11876:11932
Extra
PDB:
ATOM 1 O3' U A1875 -10.739 38.722 90.670 1.00 65.46 O
ATOM 2 P A A1876 -12.356 38.644 90.743 1.00 57.35 P
ATOM 3 OP1 A A1876 -12.872 39.846 90.054 1.00 57.78 O
ATOM 4 OP2 A A1876 -12.746 38.419 92.157 1.00 57.57 O
ATOM 5 O5' A A1876 -12.690 37.356 89.890 1.00 56.91 O
ATOM 6 C5' A A1876 -12.436 37.337 88.510 1.00 56.66 C
ATOM 7 C4' A A1876 -12.019 35.982 88.060 1.00 56.08 C
ATOM 8 O4' A A1876 -13.163 35.093 88.108 1.00 56.11 O
ATOM 9 C3' A A1876 -11.551 35.887 86.626 1.00 55.78 C
ATOM 10 O3' A A1876 -10.209 36.334 86.432 1.00 55.56 O
ATOM 11 C2' A A1876 -11.783 34.419 86.322 1.00 55.36 C
ATOM 12 O2' A A1876 -10.838 33.628 87.008 1.00 54.97 O
ATOM 13 C1' A A1876 -13.124 34.207 87.013 1.00 55.71 C
ATOM 14 N9 A A1876 -14.279 34.482 86.122 1.00 55.99 N
ATOM 15 C8 A A1876 -15.222 35.462 86.241 1.00 56.55 C
ATOM 16 N7 A A1876 -16.115 35.452 85.292 1.00 56.69 N
ATOM 17 C5 A A1876 -15.759 34.370 84.506 1.00 56.19 C
ATOM 18 C6 A A1876 -16.312 33.797 83.350 1.00 56.07 C
ATOM 19 N6 A A1876 -17.407 34.300 82.779 1.00 56.47 N
ATOM 20 N1 A A1876 -15.727 32.717 82.766 1.00 55.55 N
ATOM 21 C2 A A1876 -14.646 32.217 83.337 1.00 55.17 C
ATOM 22 N3 A A1876 -14.043 32.667 84.442 1.00 55.23 N
ATOM 23 C4 A A1876 -14.644 33.758 84.998 1.00 55.76 C
ATOM 24 P A A1877 -9.934 37.819 85.847 1.00 56.64 P
ATOM 25 OP1 A A1877 -8.511 37.909 85.507 1.00 56.29 O
ATOM 26 OP2 A A1877 -10.490 38.799 86.817 1.00 57.19 O
ATOM 27 O5' A A1877 -10.795 37.838 84.520 1.00 56.72 O
TER
ATOM 1 O3' G B1931 -12.779 30.517 80.374 1.00 50.30 O
ATOM 2 P A B1932 -12.918 29.008 80.931 1.00 59.91 P
ATOM 3 OP1 A B1932 -14.055 28.999 81.879 1.00 60.27 O
ATOM 4 OP2 A B1932 -11.566 28.608 81.426 1.00 59.50 O
ATOM 5 O5' A B1932 -13.311 28.153 79.640 1.00 59.70 O
ATOM 6 C5' A B1932 -14.266 28.613 78.706 1.00 60.02 C
ATOM 7 C4' A B1932 -14.283 27.729 77.479 1.00 59.73 C
ATOM 8 O4' A B1932 -13.164 28.048 76.607 1.00 59.48 O
ATOM 9 C3' A B1932 -14.137 26.236 77.728 1.00 59.34 C
ATOM 10 O3' A B1932 -15.356 25.638 78.076 1.00 59.53 O
ATOM 11 C2' A B1932 -13.612 25.732 76.407 1.00 59.02 C
ATOM 12 O2' A B1932 -14.675 25.658 75.479 1.00 59.25 O
ATOM 13 C1' A B1932 -12.685 26.870 75.989 1.00 59.04 C
ATOM 14 N9 A B1932 -11.289 26.635 76.424 1.00 58.64 N
ATOM 15 C8 A B1932 -10.639 27.089 77.548 1.00 58.65 C
ATOM 16 N7 A B1932 -9.397 26.690 77.624 1.00 58.25 N
ATOM 17 C5 A B1932 -9.209 25.910 76.495 1.00 57.96 C
ATOM 18 C6 A B1932 -8.111 25.192 76.009 1.00 57.51 C
ATOM 19 N6 A B1932 -6.935 25.115 76.603 1.00 57.24 N
ATOM 20 N1 A B1932 -8.264 24.519 74.869 1.00 57.35 N
ATOM 21 C2 A B1932 -9.449 24.580 74.260 1.00 57.63 C
ATOM 22 N3 A B1932 -10.565 25.227 74.589 1.00 58.06 N
ATOM 23 C4 A B1932 -10.366 25.879 75.744 1.00 58.21 C
ATOM 24 P A B1933 -15.385 24.399 79.083 1.00 51.44 P
ATOM 25 OP1 A B1933 -16.787 24.310 79.632 1.00 51.83 O
ATOM 26 OP2 A B1933 -14.215 24.554 80.044 1.00 51.23 O
ATOM 27 O5' A B1933 -15.102 23.191 78.131 1.00 51.04 O
TER
ATOM 2 P A A1876 -12.356 38.644 90.743 1.00 57.35 P
ATOM 3 OP1 A A1876 -12.872 39.846 90.054 1.00 57.78 O
ATOM 4 OP2 A A1876 -12.746 38.419 92.157 1.00 57.57 O
ATOM 5 O5' A A1876 -12.690 37.356 89.890 1.00 56.91 O
ATOM 6 C5' A A1876 -12.436 37.337 88.510 1.00 56.66 C
ATOM 7 C4' A A1876 -12.019 35.982 88.060 1.00 56.08 C
ATOM 8 O4' A A1876 -13.163 35.093 88.108 1.00 56.11 O
ATOM 9 C3' A A1876 -11.551 35.887 86.626 1.00 55.78 C
ATOM 10 O3' A A1876 -10.209 36.334 86.432 1.00 55.56 O
ATOM 11 C2' A A1876 -11.783 34.419 86.322 1.00 55.36 C
ATOM 12 O2' A A1876 -10.838 33.628 87.008 1.00 54.97 O
ATOM 13 C1' A A1876 -13.124 34.207 87.013 1.00 55.71 C
ATOM 14 N9 A A1876 -14.279 34.482 86.122 1.00 55.99 N
ATOM 15 C8 A A1876 -15.222 35.462 86.241 1.00 56.55 C
ATOM 16 N7 A A1876 -16.115 35.452 85.292 1.00 56.69 N
ATOM 17 C5 A A1876 -15.759 34.370 84.506 1.00 56.19 C
ATOM 18 C6 A A1876 -16.312 33.797 83.350 1.00 56.07 C
ATOM 19 N6 A A1876 -17.407 34.300 82.779 1.00 56.47 N
ATOM 20 N1 A A1876 -15.727 32.717 82.766 1.00 55.55 N
ATOM 21 C2 A A1876 -14.646 32.217 83.337 1.00 55.17 C
ATOM 22 N3 A A1876 -14.043 32.667 84.442 1.00 55.23 N
ATOM 23 C4 A A1876 -14.644 33.758 84.998 1.00 55.76 C
ATOM 24 P A A1877 -9.934 37.819 85.847 1.00 56.64 P
ATOM 25 OP1 A A1877 -8.511 37.909 85.507 1.00 56.29 O
ATOM 26 OP2 A A1877 -10.490 38.799 86.817 1.00 57.19 O
ATOM 27 O5' A A1877 -10.795 37.838 84.520 1.00 56.72 O
TER
ATOM 1 O3' G B1931 -12.779 30.517 80.374 1.00 50.30 O
ATOM 2 P A B1932 -12.918 29.008 80.931 1.00 59.91 P
ATOM 3 OP1 A B1932 -14.055 28.999 81.879 1.00 60.27 O
ATOM 4 OP2 A B1932 -11.566 28.608 81.426 1.00 59.50 O
ATOM 5 O5' A B1932 -13.311 28.153 79.640 1.00 59.70 O
ATOM 6 C5' A B1932 -14.266 28.613 78.706 1.00 60.02 C
ATOM 7 C4' A B1932 -14.283 27.729 77.479 1.00 59.73 C
ATOM 8 O4' A B1932 -13.164 28.048 76.607 1.00 59.48 O
ATOM 9 C3' A B1932 -14.137 26.236 77.728 1.00 59.34 C
ATOM 10 O3' A B1932 -15.356 25.638 78.076 1.00 59.53 O
ATOM 11 C2' A B1932 -13.612 25.732 76.407 1.00 59.02 C
ATOM 12 O2' A B1932 -14.675 25.658 75.479 1.00 59.25 O
ATOM 13 C1' A B1932 -12.685 26.870 75.989 1.00 59.04 C
ATOM 14 N9 A B1932 -11.289 26.635 76.424 1.00 58.64 N
ATOM 15 C8 A B1932 -10.639 27.089 77.548 1.00 58.65 C
ATOM 16 N7 A B1932 -9.397 26.690 77.624 1.00 58.25 N
ATOM 17 C5 A B1932 -9.209 25.910 76.495 1.00 57.96 C
ATOM 18 C6 A B1932 -8.111 25.192 76.009 1.00 57.51 C
ATOM 19 N6 A B1932 -6.935 25.115 76.603 1.00 57.24 N
ATOM 20 N1 A B1932 -8.264 24.519 74.869 1.00 57.35 N
ATOM 21 C2 A B1932 -9.449 24.580 74.260 1.00 57.63 C
ATOM 22 N3 A B1932 -10.565 25.227 74.589 1.00 58.06 N
ATOM 23 C4 A B1932 -10.366 25.879 75.744 1.00 58.21 C
ATOM 24 P A B1933 -15.385 24.399 79.083 1.00 51.44 P
ATOM 25 OP1 A B1933 -16.787 24.310 79.632 1.00 51.83 O
ATOM 26 OP2 A B1933 -14.215 24.554 80.044 1.00 51.23 O
ATOM 27 O5' A B1933 -15.102 23.191 78.131 1.00 51.04 O
TER
Atoms:
OP1: (-12.872,39.846,90.054)
OP2: (-12.746,38.419,92.157)
C3': (-11.551,35.887,86.626)
C1': (-13.124,34.207,87.013)
C5': (-12.436,37.337,88.510)
O4': (-13.163,35.093,88.108)
C8: (-15.222,35.462,86.241)
O2': (-10.838,33.628,87.008)
C6: (-16.312,33.797,83.350)
C5: (-15.759,34.370,84.506)
C4: (-14.644,33.758,84.998)
P: (-12.356,38.644,90.743)
C4': (-12.019,35.982,88.060)
C2': (-11.783,34.419,86.322)
C2: (-14.646,32.217,83.337)
N1: (-15.727,32.717,82.766)
N3: (-14.043,32.667,84.442)
N6: (-17.407,34.300,82.779)
N7: (-16.115,35.452,85.292)
N9: (-14.279,34.482,86.122)
O5': (-12.690,37.356,89.890)
O3': (-10.209,36.334,86.432)
OP2: (-12.746,38.419,92.157)
C3': (-11.551,35.887,86.626)
C1': (-13.124,34.207,87.013)
C5': (-12.436,37.337,88.510)
O4': (-13.163,35.093,88.108)
C8: (-15.222,35.462,86.241)
O2': (-10.838,33.628,87.008)
C6: (-16.312,33.797,83.350)
C5: (-15.759,34.370,84.506)
C4: (-14.644,33.758,84.998)
P: (-12.356,38.644,90.743)
C4': (-12.019,35.982,88.060)
C2': (-11.783,34.419,86.322)
C2: (-14.646,32.217,83.337)
N1: (-15.727,32.717,82.766)
N3: (-14.043,32.667,84.442)
N6: (-17.407,34.300,82.779)
N7: (-16.115,35.452,85.292)
N9: (-14.279,34.482,86.122)
O5': (-12.690,37.356,89.890)
O3': (-10.209,36.334,86.432)
OP1: (-14.055,28.999,81.879)
OP2: (-11.566,28.608,81.426)
C3': (-14.137,26.236,77.728)
C1': (-12.685,26.870,75.989)
C5': (-14.266,28.613,78.706)
O4': (-13.164,28.048,76.607)
C8: (-10.639,27.089,77.548)
O2': (-14.675,25.658,75.479)
C6: (-8.111,25.192,76.009)
C5: (-9.209,25.910,76.495)
C4: (-10.366,25.879,75.744)
P: (-12.918,29.008,80.931)
C4': (-14.283,27.729,77.479)
C2': (-13.612,25.732,76.407)
C2: (-9.449,24.580,74.260)
N1: (-8.264,24.519,74.869)
N3: (-10.565,25.227,74.589)
N6: (-6.935,25.115,76.603)
N7: (-9.397,26.690,77.624)
N9: (-11.289,26.635,76.424)
O5': (-13.311,28.153,79.640)
O3': (-15.356,25.638,78.076)
OP2: (-11.566,28.608,81.426)
C3': (-14.137,26.236,77.728)
C1': (-12.685,26.870,75.989)
C5': (-14.266,28.613,78.706)
O4': (-13.164,28.048,76.607)
C8: (-10.639,27.089,77.548)
O2': (-14.675,25.658,75.479)
C6: (-8.111,25.192,76.009)
C5: (-9.209,25.910,76.495)
C4: (-10.366,25.879,75.744)
P: (-12.918,29.008,80.931)
C4': (-14.283,27.729,77.479)
C2': (-13.612,25.732,76.407)
C2: (-9.449,24.580,74.260)
N1: (-8.264,24.519,74.869)
N3: (-10.565,25.227,74.589)
N6: (-6.935,25.115,76.603)
N7: (-9.397,26.690,77.624)
N9: (-11.289,26.635,76.424)
O5': (-13.311,28.153,79.640)
O3': (-15.356,25.638,78.076)
Image (generated by PyMOL):