ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1660:1664

Extra

PDB:
ATOM 1 O3' A A 659 69.462 -70.369 76.612 1.00 51.08 O
ATOM 2 P A A 660 69.428 -71.912 76.211 1.00 57.52 P
ATOM 3 OP1 A A 660 68.020 -72.326 76.175 1.00 57.48 O
ATOM 4 OP2 A A 660 70.363 -72.636 77.107 1.00 58.03 O
ATOM 5 O5' A A 660 69.974 -71.918 74.731 1.00 57.52 O
ATOM 6 C5' A A 660 69.057 -72.119 73.662 1.00 57.40 C
ATOM 7 C4' A A 660 69.640 -72.924 72.543 1.00 57.77 C
ATOM 8 O4' A A 660 70.961 -72.436 72.244 1.00 57.76 O
ATOM 9 C3' A A 660 69.780 -74.413 72.802 1.00 58.42 C
ATOM 10 O3' A A 660 69.578 -75.109 71.571 1.00 58.63 O
ATOM 11 C2' A A 660 71.235 -74.551 73.238 1.00 58.72 C
ATOM 12 O2' A A 660 71.803 -75.823 72.997 1.00 59.34 O
ATOM 13 C1' A A 660 71.913 -73.473 72.405 1.00 58.34 C
ATOM 14 N9 A A 660 73.078 -72.874 73.041 1.00 58.32 N
ATOM 15 C8 A A 660 73.079 -72.320 74.292 1.00 58.16 C
ATOM 16 N7 A A 660 74.213 -71.781 74.626 1.00 58.15 N
ATOM 17 C5 A A 660 74.968 -71.970 73.497 1.00 58.30 C
ATOM 18 C6 A A 660 76.263 -71.602 73.261 1.00 58.37 C
ATOM 19 N6 A A 660 76.940 -70.965 74.223 1.00 58.29 N
ATOM 20 N1 A A 660 76.777 -71.919 72.035 1.00 58.53 N
ATOM 21 C2 A A 660 76.020 -72.565 71.132 1.00 58.62 C
ATOM 22 N3 A A 660 74.768 -72.971 71.271 1.00 58.57 N
ATOM 23 C4 A A 660 74.307 -72.630 72.490 1.00 58.40 C
ATOM 24 P C A 661 68.078 -75.399 71.049 1.00 54.21 P
ATOM 25 OP1 C A 661 67.730 -74.302 70.081 1.00 53.67 O
ATOM 26 OP2 C A 661 67.226 -75.607 72.248 1.00 54.22 O
ATOM 27 O5' C A 661 68.254 -76.777 70.284 1.00 54.80 O
TER

ATOM 1 O3' U B 663 79.654 -73.975 67.281 1.00 90.55 O
ATOM 2 P A B 664 79.049 -73.124 68.459 1.00 61.15 P
ATOM 3 OP1 A B 664 80.017 -72.021 68.765 1.00 60.89 O
ATOM 4 OP2 A B 664 78.654 -74.083 69.534 1.00 61.51 O
ATOM 5 O5' A B 664 77.753 -72.528 67.776 1.00 60.65 O
ATOM 6 C5' A B 664 77.478 -71.142 67.745 1.00 60.03 C
ATOM 7 C4' A B 664 76.031 -70.930 67.429 1.00 59.68 C
ATOM 8 O4' A B 664 75.250 -71.067 68.649 1.00 59.62 O
ATOM 9 C3' A B 664 75.659 -69.588 66.819 1.00 59.07 C
ATOM 10 O3' A B 664 74.671 -69.808 65.813 1.00 58.98 O
ATOM 11 C2' A B 664 75.023 -68.851 67.998 1.00 58.70 C
ATOM 12 O2' A B 664 74.103 -67.850 67.637 1.00 58.15 O
ATOM 13 C1' A B 664 74.349 -70.004 68.733 1.00 59.05 C
ATOM 14 N9 A B 664 74.053 -69.749 70.139 1.00 58.94 N
ATOM 15 C8 A B 664 72.910 -70.137 70.786 1.00 58.92 C
ATOM 16 N7 A B 664 72.851 -69.764 72.041 1.00 58.81 N
ATOM 17 C5 A B 664 74.045 -69.078 72.251 1.00 58.76 C
ATOM 18 C6 A B 664 74.604 -68.423 73.373 1.00 58.65 C
ATOM 19 N6 A B 664 74.065 -68.320 74.587 1.00 58.59 N
ATOM 20 N1 A B 664 75.798 -67.829 73.203 1.00 58.63 N
ATOM 21 C2 A B 664 76.409 -67.899 72.019 1.00 58.71 C
ATOM 22 N3 A B 664 75.994 -68.486 70.907 1.00 58.81 N
ATOM 23 C4 A B 664 74.797 -69.068 71.078 1.00 58.83 C
ATOM 24 P G B 665 74.947 -69.384 64.288 1.00 58.11 P
ATOM 25 OP1 G B 665 76.389 -69.584 64.037 1.00 58.44 O
ATOM 26 OP2 G B 665 74.355 -68.025 64.100 1.00 57.49 O
ATOM 27 O5' G B 665 74.118 -70.439 63.451 1.00 58.40 O
TER

Atoms:
OP1: (68.020,-72.326,76.175)
OP2: (70.363,-72.636,77.107)
C3': (69.780,-74.413,72.802)
C1': (71.913,-73.473,72.405)
C5': (69.057,-72.119,73.662)
O4': (70.961,-72.436,72.244)
C8: (73.079,-72.320,74.292)
O2': (71.803,-75.823,72.997)
C6: (76.263,-71.602,73.261)
C5: (74.968,-71.970,73.497)
C4: (74.307,-72.630,72.490)
P: (69.428,-71.912,76.211)
C4': (69.640,-72.924,72.543)
C2': (71.235,-74.551,73.238)
C2: (76.020,-72.565,71.132)
N1: (76.777,-71.919,72.035)
N3: (74.768,-72.971,71.271)
N6: (76.940,-70.965,74.223)
N7: (74.213,-71.781,74.626)
N9: (73.078,-72.874,73.041)
O5': (69.974,-71.918,74.731)
O3': (69.578,-75.109,71.571)
OP1: (80.017,-72.021,68.765)
OP2: (78.654,-74.083,69.534)
C3': (75.659,-69.588,66.819)
C1': (74.349,-70.004,68.733)
C5': (77.478,-71.142,67.745)
O4': (75.250,-71.067,68.649)
C8: (72.910,-70.137,70.786)
O2': (74.103,-67.850,67.637)
C6: (74.604,-68.423,73.373)
C5: (74.045,-69.078,72.251)
C4: (74.797,-69.068,71.078)
P: (79.049,-73.124,68.459)
C4': (76.031,-70.930,67.429)
C2': (75.023,-68.851,67.998)
C2: (76.409,-67.899,72.019)
N1: (75.798,-67.829,73.203)
N3: (75.994,-68.486,70.907)
N6: (74.065,-68.320,74.587)
N7: (72.851,-69.764,72.041)
N9: (74.053,-69.749,70.139)
O5': (77.753,-72.528,67.776)
O3': (74.671,-69.808,65.813)
Image (generated by PyMOL):
PyMOL image
show in jmol