Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0882:0754
Extra
PDB:
ATOM 1 O3' A A 881 59.211 117.475 62.147 1.00 23.70 O
ATOM 2 P A A 882 60.463 117.719 63.117 1.00 27.76 P
ATOM 3 OP1 A A 882 59.937 117.693 64.512 1.00 27.40 O
ATOM 4 OP2 A A 882 61.213 118.908 62.644 1.00 28.22 O
ATOM 5 O5' A A 882 61.375 116.429 62.940 1.00 23.53 O
ATOM 6 C5' A A 882 61.879 116.035 61.659 1.00 22.84 C
ATOM 7 C4' A A 882 63.043 115.095 61.844 1.00 23.75 C
ATOM 8 O4' A A 882 64.179 115.827 62.365 1.00 24.63 O
ATOM 9 C3' A A 882 62.793 113.994 62.859 1.00 22.79 C
ATOM 10 O3' A A 882 62.152 112.902 62.215 1.00 26.96 O
ATOM 11 C2' A A 882 64.202 113.648 63.325 1.00 22.99 C
ATOM 12 O2' A A 882 64.878 112.797 62.424 1.00 25.38 O
ATOM 13 C1' A A 882 64.880 115.023 63.302 1.00 22.65 C
ATOM 14 N9 A A 882 64.887 115.728 64.585 1.00 21.70 N
ATOM 15 C8 A A 882 64.102 116.791 64.949 1.00 21.23 C
ATOM 16 N7 A A 882 64.326 117.221 66.162 1.00 21.47 N
ATOM 17 C5 A A 882 65.324 116.386 66.631 1.00 20.23 C
ATOM 18 C6 A A 882 65.991 116.324 67.858 1.00 22.33 C
ATOM 19 N6 A A 882 65.737 117.151 68.873 1.00 24.56 N
ATOM 20 N1 A A 882 66.938 115.375 68.013 1.00 22.98 N
ATOM 21 C2 A A 882 67.182 114.549 66.994 1.00 22.45 C
ATOM 22 N3 A A 882 66.616 114.507 65.790 1.00 22.24 N
ATOM 23 C4 A A 882 65.684 115.464 65.672 1.00 20.72 C
ATOM 24 P C A 883 60.924 112.144 62.922 1.00 26.87 P
ATOM 25 OP1 C A 883 60.407 111.205 61.903 1.00 28.03 O
ATOM 26 OP2 C A 883 60.012 113.140 63.530 1.00 27.19 O
ATOM 27 O5' C A 883 61.598 111.288 64.086 1.00 24.51 O
TER
ATOM 1 O3' A B 753 64.948 121.336 74.958 1.00 27.79 O
ATOM 2 P A B 754 65.450 122.856 75.057 1.00 28.54 P
ATOM 3 OP1 A B 754 64.971 123.415 76.338 1.00 26.79 O
ATOM 4 OP2 A B 754 65.161 123.564 73.788 1.00 30.02 O
ATOM 5 O5' A B 754 67.018 122.690 75.160 1.00 26.47 O
ATOM 6 C5' A B 754 67.755 122.195 74.054 1.00 22.94 C
ATOM 7 C4' A B 754 68.690 121.127 74.511 1.00 23.95 C
ATOM 8 O4' A B 754 68.005 119.850 74.571 1.00 26.11 O
ATOM 9 C3' A B 754 69.790 120.845 73.528 1.00 24.73 C
ATOM 10 O3' A B 754 70.776 121.845 73.597 1.00 26.33 O
ATOM 11 C2' A B 754 70.272 119.472 73.975 1.00 25.56 C
ATOM 12 O2' A B 754 71.122 119.500 75.102 1.00 26.04 O
ATOM 13 C1' A B 754 68.944 118.806 74.342 1.00 25.13 C
ATOM 14 N9 A B 754 68.464 117.946 73.262 1.00 26.23 N
ATOM 15 C8 A B 754 67.820 118.289 72.097 1.00 27.52 C
ATOM 16 N7 A B 754 67.597 117.271 71.298 1.00 27.83 N
ATOM 17 C5 A B 754 68.106 116.183 71.994 1.00 27.28 C
ATOM 18 C6 A B 754 68.186 114.814 71.688 1.00 28.40 C
ATOM 19 N6 A B 754 67.742 114.274 70.547 1.00 26.53 N
ATOM 20 N1 A B 754 68.753 114.002 72.604 1.00 29.70 N
ATOM 21 C2 A B 754 69.211 114.534 73.740 1.00 28.99 C
ATOM 22 N3 A B 754 69.201 115.796 74.138 1.00 29.70 N
ATOM 23 C4 A B 754 68.628 116.581 73.210 1.00 26.98 C
ATOM 24 P U B 755 71.623 122.183 72.291 1.00 30.50 P
ATOM 25 OP1 U B 755 72.820 122.943 72.729 1.00 31.71 O
ATOM 26 OP2 U B 755 70.722 122.753 71.254 1.00 29.41 O
ATOM 27 O5' U B 755 72.071 120.732 71.824 1.00 30.37 O
TER
ATOM 2 P A A 882 60.463 117.719 63.117 1.00 27.76 P
ATOM 3 OP1 A A 882 59.937 117.693 64.512 1.00 27.40 O
ATOM 4 OP2 A A 882 61.213 118.908 62.644 1.00 28.22 O
ATOM 5 O5' A A 882 61.375 116.429 62.940 1.00 23.53 O
ATOM 6 C5' A A 882 61.879 116.035 61.659 1.00 22.84 C
ATOM 7 C4' A A 882 63.043 115.095 61.844 1.00 23.75 C
ATOM 8 O4' A A 882 64.179 115.827 62.365 1.00 24.63 O
ATOM 9 C3' A A 882 62.793 113.994 62.859 1.00 22.79 C
ATOM 10 O3' A A 882 62.152 112.902 62.215 1.00 26.96 O
ATOM 11 C2' A A 882 64.202 113.648 63.325 1.00 22.99 C
ATOM 12 O2' A A 882 64.878 112.797 62.424 1.00 25.38 O
ATOM 13 C1' A A 882 64.880 115.023 63.302 1.00 22.65 C
ATOM 14 N9 A A 882 64.887 115.728 64.585 1.00 21.70 N
ATOM 15 C8 A A 882 64.102 116.791 64.949 1.00 21.23 C
ATOM 16 N7 A A 882 64.326 117.221 66.162 1.00 21.47 N
ATOM 17 C5 A A 882 65.324 116.386 66.631 1.00 20.23 C
ATOM 18 C6 A A 882 65.991 116.324 67.858 1.00 22.33 C
ATOM 19 N6 A A 882 65.737 117.151 68.873 1.00 24.56 N
ATOM 20 N1 A A 882 66.938 115.375 68.013 1.00 22.98 N
ATOM 21 C2 A A 882 67.182 114.549 66.994 1.00 22.45 C
ATOM 22 N3 A A 882 66.616 114.507 65.790 1.00 22.24 N
ATOM 23 C4 A A 882 65.684 115.464 65.672 1.00 20.72 C
ATOM 24 P C A 883 60.924 112.144 62.922 1.00 26.87 P
ATOM 25 OP1 C A 883 60.407 111.205 61.903 1.00 28.03 O
ATOM 26 OP2 C A 883 60.012 113.140 63.530 1.00 27.19 O
ATOM 27 O5' C A 883 61.598 111.288 64.086 1.00 24.51 O
TER
ATOM 1 O3' A B 753 64.948 121.336 74.958 1.00 27.79 O
ATOM 2 P A B 754 65.450 122.856 75.057 1.00 28.54 P
ATOM 3 OP1 A B 754 64.971 123.415 76.338 1.00 26.79 O
ATOM 4 OP2 A B 754 65.161 123.564 73.788 1.00 30.02 O
ATOM 5 O5' A B 754 67.018 122.690 75.160 1.00 26.47 O
ATOM 6 C5' A B 754 67.755 122.195 74.054 1.00 22.94 C
ATOM 7 C4' A B 754 68.690 121.127 74.511 1.00 23.95 C
ATOM 8 O4' A B 754 68.005 119.850 74.571 1.00 26.11 O
ATOM 9 C3' A B 754 69.790 120.845 73.528 1.00 24.73 C
ATOM 10 O3' A B 754 70.776 121.845 73.597 1.00 26.33 O
ATOM 11 C2' A B 754 70.272 119.472 73.975 1.00 25.56 C
ATOM 12 O2' A B 754 71.122 119.500 75.102 1.00 26.04 O
ATOM 13 C1' A B 754 68.944 118.806 74.342 1.00 25.13 C
ATOM 14 N9 A B 754 68.464 117.946 73.262 1.00 26.23 N
ATOM 15 C8 A B 754 67.820 118.289 72.097 1.00 27.52 C
ATOM 16 N7 A B 754 67.597 117.271 71.298 1.00 27.83 N
ATOM 17 C5 A B 754 68.106 116.183 71.994 1.00 27.28 C
ATOM 18 C6 A B 754 68.186 114.814 71.688 1.00 28.40 C
ATOM 19 N6 A B 754 67.742 114.274 70.547 1.00 26.53 N
ATOM 20 N1 A B 754 68.753 114.002 72.604 1.00 29.70 N
ATOM 21 C2 A B 754 69.211 114.534 73.740 1.00 28.99 C
ATOM 22 N3 A B 754 69.201 115.796 74.138 1.00 29.70 N
ATOM 23 C4 A B 754 68.628 116.581 73.210 1.00 26.98 C
ATOM 24 P U B 755 71.623 122.183 72.291 1.00 30.50 P
ATOM 25 OP1 U B 755 72.820 122.943 72.729 1.00 31.71 O
ATOM 26 OP2 U B 755 70.722 122.753 71.254 1.00 29.41 O
ATOM 27 O5' U B 755 72.071 120.732 71.824 1.00 30.37 O
TER
Atoms:
OP1: (59.937,117.693,64.512)
OP2: (61.213,118.908,62.644)
C3': (62.793,113.994,62.859)
C1': (64.880,115.023,63.302)
C5': (61.879,116.035,61.659)
O4': (64.179,115.827,62.365)
C8: (64.102,116.791,64.949)
O2': (64.878,112.797,62.424)
C6: (65.991,116.324,67.858)
C5: (65.324,116.386,66.631)
C4: (65.684,115.464,65.672)
P: (60.463,117.719,63.117)
C4': (63.043,115.095,61.844)
C2': (64.202,113.648,63.325)
C2: (67.182,114.549,66.994)
N1: (66.938,115.375,68.013)
N3: (66.616,114.507,65.790)
N6: (65.737,117.151,68.873)
N7: (64.326,117.221,66.162)
N9: (64.887,115.728,64.585)
O5': (61.375,116.429,62.940)
O3': (62.152,112.902,62.215)
OP2: (61.213,118.908,62.644)
C3': (62.793,113.994,62.859)
C1': (64.880,115.023,63.302)
C5': (61.879,116.035,61.659)
O4': (64.179,115.827,62.365)
C8: (64.102,116.791,64.949)
O2': (64.878,112.797,62.424)
C6: (65.991,116.324,67.858)
C5: (65.324,116.386,66.631)
C4: (65.684,115.464,65.672)
P: (60.463,117.719,63.117)
C4': (63.043,115.095,61.844)
C2': (64.202,113.648,63.325)
C2: (67.182,114.549,66.994)
N1: (66.938,115.375,68.013)
N3: (66.616,114.507,65.790)
N6: (65.737,117.151,68.873)
N7: (64.326,117.221,66.162)
N9: (64.887,115.728,64.585)
O5': (61.375,116.429,62.940)
O3': (62.152,112.902,62.215)
OP1: (64.971,123.415,76.338)
OP2: (65.161,123.564,73.788)
C3': (69.790,120.845,73.528)
C1': (68.944,118.806,74.342)
C5': (67.755,122.195,74.054)
O4': (68.005,119.850,74.571)
C8: (67.820,118.289,72.097)
O2': (71.122,119.500,75.102)
C6: (68.186,114.814,71.688)
C5: (68.106,116.183,71.994)
C4: (68.628,116.581,73.210)
P: (65.450,122.856,75.057)
C4': (68.690,121.127,74.511)
C2': (70.272,119.472,73.975)
C2: (69.211,114.534,73.740)
N1: (68.753,114.002,72.604)
N3: (69.201,115.796,74.138)
N6: (67.742,114.274,70.547)
N7: (67.597,117.271,71.298)
N9: (68.464,117.946,73.262)
O5': (67.018,122.690,75.160)
O3': (70.776,121.845,73.597)
OP2: (65.161,123.564,73.788)
C3': (69.790,120.845,73.528)
C1': (68.944,118.806,74.342)
C5': (67.755,122.195,74.054)
O4': (68.005,119.850,74.571)
C8: (67.820,118.289,72.097)
O2': (71.122,119.500,75.102)
C6: (68.186,114.814,71.688)
C5: (68.106,116.183,71.994)
C4: (68.628,116.581,73.210)
P: (65.450,122.856,75.057)
C4': (68.690,121.127,74.511)
C2': (70.272,119.472,73.975)
C2: (69.211,114.534,73.740)
N1: (68.753,114.002,72.604)
N3: (69.201,115.796,74.138)
N6: (67.742,114.274,70.547)
N7: (67.597,117.271,71.298)
N9: (68.464,117.946,73.262)
O5': (67.018,122.690,75.160)
O3': (70.776,121.845,73.597)
Image (generated by PyMOL):