Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2RFK:F5:E5
Extra
PDB:
ATOM 1 O3' C A 4 3.321 42.308 79.987 1.00 52.58 O
ATOM 2 P G A 5 2.893 42.906 78.566 1.00 53.09 P
ATOM 3 OP1 G A 5 1.667 42.164 78.133 1.00 48.26 O
ATOM 4 OP2 G A 5 4.153 42.979 77.756 1.00 51.16 O
ATOM 5 O5' G A 5 2.532 44.449 78.828 1.00 52.39 O
ATOM 6 C5' G A 5 2.267 45.272 77.697 1.00 52.99 C
ATOM 7 C4' G A 5 0.892 45.908 77.812 1.00 54.36 C
ATOM 8 O4' G A 5 -0.189 44.938 77.975 1.00 54.73 O
ATOM 9 C3' G A 5 0.779 46.868 78.981 1.00 55.28 C
ATOM 10 O3' G A 5 0.119 48.021 78.517 1.00 57.61 O
ATOM 11 C2' G A 5 -0.053 46.086 79.999 1.00 55.07 C
ATOM 12 O2' G A 5 -0.871 46.925 80.778 1.00 56.64 O
ATOM 13 C1' G A 5 -0.968 45.288 79.099 1.00 53.38 C
ATOM 14 N9 G A 5 -1.403 44.026 79.632 1.00 52.67 N
ATOM 15 C8 G A 5 -0.672 42.867 79.614 1.00 52.71 C
ATOM 16 N7 G A 5 -1.311 41.844 80.133 1.00 53.10 N
ATOM 17 C5 G A 5 -2.538 42.361 80.506 1.00 52.36 C
ATOM 18 C6 G A 5 -3.635 41.710 81.106 1.00 52.60 C
ATOM 19 O6 G A 5 -3.740 40.520 81.444 1.00 53.06 O
ATOM 20 N1 G A 5 -4.692 42.584 81.322 1.00 52.52 N
ATOM 21 C2 G A 5 -4.687 43.915 81.001 1.00 52.24 C
ATOM 22 N2 G A 5 -5.822 44.549 81.308 1.00 52.39 N
ATOM 23 N3 G A 5 -3.666 44.553 80.428 1.00 52.09 N
ATOM 24 C4 G A 5 -2.619 43.713 80.208 1.00 52.75 C
ATOM 25 P U A 6 0.892 49.139 77.682 1.00 60.25 P
ATOM 26 OP1 U A 6 1.241 48.655 76.327 1.00 59.28 O
ATOM 27 OP2 U A 6 1.957 49.699 78.550 1.00 61.37 O
ATOM 28 O5' U A 6 -0.266 50.213 77.509 1.00 62.91 O
TER
ATOM 1 O3' U B 4 -9.109 46.142 77.490 1.00 43.83 O
ATOM 2 P U B 5 -10.100 46.585 78.678 1.00 43.39 P
ATOM 3 OP1 U B 5 -11.221 47.350 78.094 1.00 44.12 O
ATOM 4 OP2 U B 5 -9.262 47.245 79.681 1.00 45.04 O
ATOM 5 O5' U B 5 -10.682 45.273 79.378 1.00 41.87 O
ATOM 6 C5' U B 5 -11.153 44.184 78.648 1.00 41.15 C
ATOM 7 C4' U B 5 -10.484 42.911 79.137 1.00 41.46 C
ATOM 8 O4' U B 5 -9.346 42.597 78.290 1.00 41.30 O
ATOM 9 C3' U B 5 -9.999 42.916 80.591 1.00 41.06 C
ATOM 10 O3' U B 5 -10.342 41.724 81.257 1.00 40.46 O
ATOM 11 C2' U B 5 -8.487 42.926 80.450 1.00 41.38 C
ATOM 12 O2' U B 5 -7.854 42.130 81.426 1.00 41.97 O
ATOM 13 C1' U B 5 -8.268 42.241 79.118 1.00 41.72 C
ATOM 14 N1 U B 5 -7.004 42.700 78.535 1.00 41.93 N
ATOM 15 C2 U B 5 -6.006 41.773 78.306 1.00 41.99 C
ATOM 16 O2 U B 5 -6.124 40.587 78.550 1.00 43.00 O
ATOM 17 N3 U B 5 -4.850 42.278 77.770 1.00 41.11 N
ATOM 18 C4 U B 5 -4.609 43.602 77.449 1.00 41.83 C
ATOM 19 O4 U B 5 -3.521 43.928 76.973 1.00 42.41 O
ATOM 20 C5 U B 5 -5.706 44.504 77.722 1.00 42.27 C
ATOM 21 C6 U B 5 -6.844 44.037 78.250 1.00 41.04 C
ATOM 22 P C B 6 -11.756 41.405 81.919 1.00 40.28 P
ATOM 23 OP1 C B 6 -12.892 41.907 81.118 1.00 39.47 O
ATOM 24 OP2 C B 6 -11.632 41.856 83.316 1.00 41.63 O
ATOM 25 O5' C B 6 -11.715 39.804 81.845 1.00 39.85 O
TER
ATOM 2 P G A 5 2.893 42.906 78.566 1.00 53.09 P
ATOM 3 OP1 G A 5 1.667 42.164 78.133 1.00 48.26 O
ATOM 4 OP2 G A 5 4.153 42.979 77.756 1.00 51.16 O
ATOM 5 O5' G A 5 2.532 44.449 78.828 1.00 52.39 O
ATOM 6 C5' G A 5 2.267 45.272 77.697 1.00 52.99 C
ATOM 7 C4' G A 5 0.892 45.908 77.812 1.00 54.36 C
ATOM 8 O4' G A 5 -0.189 44.938 77.975 1.00 54.73 O
ATOM 9 C3' G A 5 0.779 46.868 78.981 1.00 55.28 C
ATOM 10 O3' G A 5 0.119 48.021 78.517 1.00 57.61 O
ATOM 11 C2' G A 5 -0.053 46.086 79.999 1.00 55.07 C
ATOM 12 O2' G A 5 -0.871 46.925 80.778 1.00 56.64 O
ATOM 13 C1' G A 5 -0.968 45.288 79.099 1.00 53.38 C
ATOM 14 N9 G A 5 -1.403 44.026 79.632 1.00 52.67 N
ATOM 15 C8 G A 5 -0.672 42.867 79.614 1.00 52.71 C
ATOM 16 N7 G A 5 -1.311 41.844 80.133 1.00 53.10 N
ATOM 17 C5 G A 5 -2.538 42.361 80.506 1.00 52.36 C
ATOM 18 C6 G A 5 -3.635 41.710 81.106 1.00 52.60 C
ATOM 19 O6 G A 5 -3.740 40.520 81.444 1.00 53.06 O
ATOM 20 N1 G A 5 -4.692 42.584 81.322 1.00 52.52 N
ATOM 21 C2 G A 5 -4.687 43.915 81.001 1.00 52.24 C
ATOM 22 N2 G A 5 -5.822 44.549 81.308 1.00 52.39 N
ATOM 23 N3 G A 5 -3.666 44.553 80.428 1.00 52.09 N
ATOM 24 C4 G A 5 -2.619 43.713 80.208 1.00 52.75 C
ATOM 25 P U A 6 0.892 49.139 77.682 1.00 60.25 P
ATOM 26 OP1 U A 6 1.241 48.655 76.327 1.00 59.28 O
ATOM 27 OP2 U A 6 1.957 49.699 78.550 1.00 61.37 O
ATOM 28 O5' U A 6 -0.266 50.213 77.509 1.00 62.91 O
TER
ATOM 1 O3' U B 4 -9.109 46.142 77.490 1.00 43.83 O
ATOM 2 P U B 5 -10.100 46.585 78.678 1.00 43.39 P
ATOM 3 OP1 U B 5 -11.221 47.350 78.094 1.00 44.12 O
ATOM 4 OP2 U B 5 -9.262 47.245 79.681 1.00 45.04 O
ATOM 5 O5' U B 5 -10.682 45.273 79.378 1.00 41.87 O
ATOM 6 C5' U B 5 -11.153 44.184 78.648 1.00 41.15 C
ATOM 7 C4' U B 5 -10.484 42.911 79.137 1.00 41.46 C
ATOM 8 O4' U B 5 -9.346 42.597 78.290 1.00 41.30 O
ATOM 9 C3' U B 5 -9.999 42.916 80.591 1.00 41.06 C
ATOM 10 O3' U B 5 -10.342 41.724 81.257 1.00 40.46 O
ATOM 11 C2' U B 5 -8.487 42.926 80.450 1.00 41.38 C
ATOM 12 O2' U B 5 -7.854 42.130 81.426 1.00 41.97 O
ATOM 13 C1' U B 5 -8.268 42.241 79.118 1.00 41.72 C
ATOM 14 N1 U B 5 -7.004 42.700 78.535 1.00 41.93 N
ATOM 15 C2 U B 5 -6.006 41.773 78.306 1.00 41.99 C
ATOM 16 O2 U B 5 -6.124 40.587 78.550 1.00 43.00 O
ATOM 17 N3 U B 5 -4.850 42.278 77.770 1.00 41.11 N
ATOM 18 C4 U B 5 -4.609 43.602 77.449 1.00 41.83 C
ATOM 19 O4 U B 5 -3.521 43.928 76.973 1.00 42.41 O
ATOM 20 C5 U B 5 -5.706 44.504 77.722 1.00 42.27 C
ATOM 21 C6 U B 5 -6.844 44.037 78.250 1.00 41.04 C
ATOM 22 P C B 6 -11.756 41.405 81.919 1.00 40.28 P
ATOM 23 OP1 C B 6 -12.892 41.907 81.118 1.00 39.47 O
ATOM 24 OP2 C B 6 -11.632 41.856 83.316 1.00 41.63 O
ATOM 25 O5' C B 6 -11.715 39.804 81.845 1.00 39.85 O
TER
Atoms:
OP1: (1.667,42.164,78.133)
OP2: (4.153,42.979,77.756)
C3': (0.779,46.868,78.981)
C1': (-0.968,45.288,79.099)
C5': (2.267,45.272,77.697)
O6: (-3.740,40.520,81.444)
O4': (-0.189,44.938,77.975)
C8: (-0.672,42.867,79.614)
C2: (-4.687,43.915,81.001)
C6: (-3.635,41.710,81.106)
C5: (-2.538,42.361,80.506)
C4: (-2.619,43.713,80.208)
P: (2.893,42.906,78.566)
C4': (0.892,45.908,77.812)
C2': (-0.053,46.086,79.999)
O2': (-0.871,46.925,80.778)
N1: (-4.692,42.584,81.322)
N2: (-5.822,44.549,81.308)
N3: (-3.666,44.553,80.428)
N7: (-1.311,41.844,80.133)
N9: (-1.403,44.026,79.632)
O5': (2.532,44.449,78.828)
O3': (0.119,48.021,78.517)
OP2: (4.153,42.979,77.756)
C3': (0.779,46.868,78.981)
C1': (-0.968,45.288,79.099)
C5': (2.267,45.272,77.697)
O6: (-3.740,40.520,81.444)
O4': (-0.189,44.938,77.975)
C8: (-0.672,42.867,79.614)
C2: (-4.687,43.915,81.001)
C6: (-3.635,41.710,81.106)
C5: (-2.538,42.361,80.506)
C4: (-2.619,43.713,80.208)
P: (2.893,42.906,78.566)
C4': (0.892,45.908,77.812)
C2': (-0.053,46.086,79.999)
O2': (-0.871,46.925,80.778)
N1: (-4.692,42.584,81.322)
N2: (-5.822,44.549,81.308)
N3: (-3.666,44.553,80.428)
N7: (-1.311,41.844,80.133)
N9: (-1.403,44.026,79.632)
O5': (2.532,44.449,78.828)
O3': (0.119,48.021,78.517)
C4: (-4.609,43.602,77.449)
N3: (-4.850,42.278,77.770)
OP1: (-11.221,47.350,78.094)
OP2: (-9.262,47.245,79.681)
C2: (-6.006,41.773,78.306)
C1': (-8.268,42.241,79.118)
C3': (-9.999,42.916,80.591)
O5': (-10.682,45.273,79.378)
O4': (-9.346,42.597,78.290)
C5': (-11.153,44.184,78.648)
P: (-10.100,46.585,78.678)
C4': (-10.484,42.911,79.137)
C2': (-8.487,42.926,80.450)
O2': (-7.854,42.130,81.426)
N1: (-7.004,42.700,78.535)
O4: (-3.521,43.928,76.973)
O2: (-6.124,40.587,78.550)
C6: (-6.844,44.037,78.250)
C5: (-5.706,44.504,77.722)
O3': (-10.342,41.724,81.257)
N3: (-4.850,42.278,77.770)
OP1: (-11.221,47.350,78.094)
OP2: (-9.262,47.245,79.681)
C2: (-6.006,41.773,78.306)
C1': (-8.268,42.241,79.118)
C3': (-9.999,42.916,80.591)
O5': (-10.682,45.273,79.378)
O4': (-9.346,42.597,78.290)
C5': (-11.153,44.184,78.648)
P: (-10.100,46.585,78.678)
C4': (-10.484,42.911,79.137)
C2': (-8.487,42.926,80.450)
O2': (-7.854,42.130,81.426)
N1: (-7.004,42.700,78.535)
O4: (-3.521,43.928,76.973)
O2: (-6.124,40.587,78.550)
C6: (-6.844,44.037,78.250)
C5: (-5.706,44.504,77.722)
O3': (-10.342,41.724,81.257)
Image (generated by PyMOL):