Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12087:12117
Extra
PDB:
ATOM 1 O3' A A2086 -8.123 5.988 68.832 1.00 41.63 O
ATOM 2 P A A2087 -7.579 7.367 69.396 1.00 48.25 P
ATOM 3 OP1 A A2087 -8.455 8.414 68.871 1.00 48.59 O
ATOM 4 OP2 A A2087 -6.186 7.422 69.049 1.00 47.94 O
ATOM 5 O5' A A2087 -7.742 7.234 70.964 1.00 48.27 O
ATOM 6 C5' A A2087 -8.754 7.942 71.633 1.00 48.59 C
ATOM 7 C4' A A2087 -8.816 7.579 73.080 1.00 48.58 C
ATOM 8 O4' A A2087 -9.347 6.274 73.221 1.00 48.55 O
ATOM 9 C3' A A2087 -7.500 7.509 73.813 1.00 48.28 C
ATOM 10 O3' A A2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 11 C2' A A2087 -7.774 6.563 74.989 1.00 48.26 C
ATOM 12 O2' A A2087 -8.208 7.277 76.136 1.00 48.48 O
ATOM 13 C1' A A2087 -8.954 5.750 74.464 1.00 48.42 C
ATOM 14 N9 A A2087 -8.666 4.341 74.285 1.00 48.20 N
ATOM 15 C8 A A2087 -7.774 3.773 73.437 1.00 47.92 C
ATOM 16 N7 A A2087 -7.856 2.469 73.440 1.00 47.82 N
ATOM 17 C5 A A2087 -8.870 2.226 74.340 1.00 48.05 C
ATOM 18 C6 A A2087 -9.420 1.046 74.772 1.00 48.08 C
ATOM 19 N6 A A2087 -8.956 -0.106 74.321 1.00 47.87 N
ATOM 20 N1 A A2087 -10.442 1.127 75.657 1.00 48.35 N
ATOM 21 C2 A A2087 -10.868 2.332 76.085 1.00 48.57 C
ATOM 22 N3 A A2087 -10.423 3.532 75.750 1.00 48.57 N
ATOM 23 C4 A A2087 -9.417 3.374 74.864 1.00 48.29 C
ATOM 24 P A A2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 25 OP1 A A2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 26 OP2 A A2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 27 O5' A A2088 -4.654 8.363 74.164 1.00 55.06 O
TER
ATOM 1 O3' A B2116 -7.984 -6.117 72.916 1.00 60.76 O
ATOM 2 P U B2117 -9.450 -6.033 73.526 1.00 51.90 P
ATOM 3 OP1 U B2117 -9.602 -7.180 74.418 1.00 51.91 O
ATOM 4 OP2 U B2117 -10.381 -5.876 72.377 1.00 52.12 O
ATOM 5 O5' U B2117 -9.449 -4.707 74.357 1.00 51.97 O
ATOM 6 C5' U B2117 -8.541 -4.481 75.386 1.00 51.80 C
ATOM 7 C4' U B2117 -9.008 -3.322 76.165 1.00 51.99 C
ATOM 8 O4' U B2117 -10.166 -2.758 75.509 1.00 52.27 O
ATOM 9 C3' U B2117 -9.490 -3.680 77.513 1.00 52.13 C
ATOM 10 O3' U B2117 -8.436 -3.739 78.426 1.00 51.92 O
ATOM 11 C2' U B2117 -10.547 -2.630 77.810 1.00 52.45 C
ATOM 12 O2' U B2117 -9.952 -1.409 78.183 1.00 52.40 O
ATOM 13 C1' U B2117 -11.155 -2.446 76.442 1.00 52.55 C
ATOM 14 N1 U B2117 -12.338 -3.333 76.201 1.00 52.78 N
ATOM 15 C2 U B2117 -13.439 -3.226 77.023 1.00 53.08 C
ATOM 16 O2 U B2117 -13.500 -2.483 77.978 1.00 53.18 O
ATOM 17 N3 U B2117 -14.483 -4.028 76.716 1.00 53.29 N
ATOM 18 C4 U B2117 -14.615 -4.910 75.689 1.00 53.25 C
ATOM 19 O4 U B2117 -15.681 -5.545 75.614 1.00 53.50 O
ATOM 20 C5 U B2117 -13.472 -4.981 74.848 1.00 52.94 C
ATOM 21 C6 U B2117 -12.420 -4.207 75.130 1.00 52.72 C
ATOM 22 P G B2118 -8.366 -4.947 79.427 1.00 46.92 P
ATOM 23 OP1 G B2118 -7.156 -4.742 80.252 1.00 46.71 O
ATOM 24 OP2 G B2118 -8.517 -6.202 78.633 1.00 46.86 O
ATOM 25 O5' G B2118 -9.659 -4.716 80.317 1.00 47.27 O
TER
ATOM 2 P A A2087 -7.579 7.367 69.396 1.00 48.25 P
ATOM 3 OP1 A A2087 -8.455 8.414 68.871 1.00 48.59 O
ATOM 4 OP2 A A2087 -6.186 7.422 69.049 1.00 47.94 O
ATOM 5 O5' A A2087 -7.742 7.234 70.964 1.00 48.27 O
ATOM 6 C5' A A2087 -8.754 7.942 71.633 1.00 48.59 C
ATOM 7 C4' A A2087 -8.816 7.579 73.080 1.00 48.58 C
ATOM 8 O4' A A2087 -9.347 6.274 73.221 1.00 48.55 O
ATOM 9 C3' A A2087 -7.500 7.509 73.813 1.00 48.28 C
ATOM 10 O3' A A2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 11 C2' A A2087 -7.774 6.563 74.989 1.00 48.26 C
ATOM 12 O2' A A2087 -8.208 7.277 76.136 1.00 48.48 O
ATOM 13 C1' A A2087 -8.954 5.750 74.464 1.00 48.42 C
ATOM 14 N9 A A2087 -8.666 4.341 74.285 1.00 48.20 N
ATOM 15 C8 A A2087 -7.774 3.773 73.437 1.00 47.92 C
ATOM 16 N7 A A2087 -7.856 2.469 73.440 1.00 47.82 N
ATOM 17 C5 A A2087 -8.870 2.226 74.340 1.00 48.05 C
ATOM 18 C6 A A2087 -9.420 1.046 74.772 1.00 48.08 C
ATOM 19 N6 A A2087 -8.956 -0.106 74.321 1.00 47.87 N
ATOM 20 N1 A A2087 -10.442 1.127 75.657 1.00 48.35 N
ATOM 21 C2 A A2087 -10.868 2.332 76.085 1.00 48.57 C
ATOM 22 N3 A A2087 -10.423 3.532 75.750 1.00 48.57 N
ATOM 23 C4 A A2087 -9.417 3.374 74.864 1.00 48.29 C
ATOM 24 P A A2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 25 OP1 A A2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 26 OP2 A A2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 27 O5' A A2088 -4.654 8.363 74.164 1.00 55.06 O
TER
ATOM 1 O3' A B2116 -7.984 -6.117 72.916 1.00 60.76 O
ATOM 2 P U B2117 -9.450 -6.033 73.526 1.00 51.90 P
ATOM 3 OP1 U B2117 -9.602 -7.180 74.418 1.00 51.91 O
ATOM 4 OP2 U B2117 -10.381 -5.876 72.377 1.00 52.12 O
ATOM 5 O5' U B2117 -9.449 -4.707 74.357 1.00 51.97 O
ATOM 6 C5' U B2117 -8.541 -4.481 75.386 1.00 51.80 C
ATOM 7 C4' U B2117 -9.008 -3.322 76.165 1.00 51.99 C
ATOM 8 O4' U B2117 -10.166 -2.758 75.509 1.00 52.27 O
ATOM 9 C3' U B2117 -9.490 -3.680 77.513 1.00 52.13 C
ATOM 10 O3' U B2117 -8.436 -3.739 78.426 1.00 51.92 O
ATOM 11 C2' U B2117 -10.547 -2.630 77.810 1.00 52.45 C
ATOM 12 O2' U B2117 -9.952 -1.409 78.183 1.00 52.40 O
ATOM 13 C1' U B2117 -11.155 -2.446 76.442 1.00 52.55 C
ATOM 14 N1 U B2117 -12.338 -3.333 76.201 1.00 52.78 N
ATOM 15 C2 U B2117 -13.439 -3.226 77.023 1.00 53.08 C
ATOM 16 O2 U B2117 -13.500 -2.483 77.978 1.00 53.18 O
ATOM 17 N3 U B2117 -14.483 -4.028 76.716 1.00 53.29 N
ATOM 18 C4 U B2117 -14.615 -4.910 75.689 1.00 53.25 C
ATOM 19 O4 U B2117 -15.681 -5.545 75.614 1.00 53.50 O
ATOM 20 C5 U B2117 -13.472 -4.981 74.848 1.00 52.94 C
ATOM 21 C6 U B2117 -12.420 -4.207 75.130 1.00 52.72 C
ATOM 22 P G B2118 -8.366 -4.947 79.427 1.00 46.92 P
ATOM 23 OP1 G B2118 -7.156 -4.742 80.252 1.00 46.71 O
ATOM 24 OP2 G B2118 -8.517 -6.202 78.633 1.00 46.86 O
ATOM 25 O5' G B2118 -9.659 -4.716 80.317 1.00 47.27 O
TER
Atoms:
OP1: (-8.455,8.414,68.871)
OP2: (-6.186,7.422,69.049)
C3': (-7.500,7.509,73.813)
C1': (-8.954,5.750,74.464)
C5': (-8.754,7.942,71.633)
O4': (-9.347,6.274,73.221)
C8: (-7.774,3.773,73.437)
O2': (-8.208,7.277,76.136)
C6: (-9.420,1.046,74.772)
C5: (-8.870,2.226,74.340)
C4: (-9.417,3.374,74.864)
P: (-7.579,7.367,69.396)
C4': (-8.816,7.579,73.080)
C2': (-7.774,6.563,74.989)
C2: (-10.868,2.332,76.085)
N1: (-10.442,1.127,75.657)
N3: (-10.423,3.532,75.750)
N6: (-8.956,-0.106,74.321)
N7: (-7.856,2.469,73.440)
N9: (-8.666,4.341,74.285)
O5': (-7.742,7.234,70.964)
O3': (-7.066,8.772,74.201)
OP2: (-6.186,7.422,69.049)
C3': (-7.500,7.509,73.813)
C1': (-8.954,5.750,74.464)
C5': (-8.754,7.942,71.633)
O4': (-9.347,6.274,73.221)
C8: (-7.774,3.773,73.437)
O2': (-8.208,7.277,76.136)
C6: (-9.420,1.046,74.772)
C5: (-8.870,2.226,74.340)
C4: (-9.417,3.374,74.864)
P: (-7.579,7.367,69.396)
C4': (-8.816,7.579,73.080)
C2': (-7.774,6.563,74.989)
C2: (-10.868,2.332,76.085)
N1: (-10.442,1.127,75.657)
N3: (-10.423,3.532,75.750)
N6: (-8.956,-0.106,74.321)
N7: (-7.856,2.469,73.440)
N9: (-8.666,4.341,74.285)
O5': (-7.742,7.234,70.964)
O3': (-7.066,8.772,74.201)
C4: (-14.615,-4.910,75.689)
N3: (-14.483,-4.028,76.716)
OP1: (-9.602,-7.180,74.418)
OP2: (-10.381,-5.876,72.377)
C2: (-13.439,-3.226,77.023)
C1': (-11.155,-2.446,76.442)
C3': (-9.490,-3.680,77.513)
O5': (-9.449,-4.707,74.357)
O4': (-10.166,-2.758,75.509)
C5': (-8.541,-4.481,75.386)
P: (-9.450,-6.033,73.526)
C4': (-9.008,-3.322,76.165)
C2': (-10.547,-2.630,77.810)
O2': (-9.952,-1.409,78.183)
N1: (-12.338,-3.333,76.201)
O4: (-15.681,-5.545,75.614)
O2: (-13.500,-2.483,77.978)
C6: (-12.420,-4.207,75.130)
C5: (-13.472,-4.981,74.848)
O3': (-8.436,-3.739,78.426)
N3: (-14.483,-4.028,76.716)
OP1: (-9.602,-7.180,74.418)
OP2: (-10.381,-5.876,72.377)
C2: (-13.439,-3.226,77.023)
C1': (-11.155,-2.446,76.442)
C3': (-9.490,-3.680,77.513)
O5': (-9.449,-4.707,74.357)
O4': (-10.166,-2.758,75.509)
C5': (-8.541,-4.481,75.386)
P: (-9.450,-6.033,73.526)
C4': (-9.008,-3.322,76.165)
C2': (-10.547,-2.630,77.810)
O2': (-9.952,-1.409,78.183)
N1: (-12.338,-3.333,76.201)
O4: (-15.681,-5.545,75.614)
O2: (-13.500,-2.483,77.978)
C6: (-12.420,-4.207,75.130)
C5: (-13.472,-4.981,74.848)
O3': (-8.436,-3.739,78.426)
Image (generated by PyMOL):