Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0127:0126
Extra
PDB:
ATOM 1 O3' U A 126 94.847 145.979 7.286 1.00100.20 O
ATOM 2 P C A 127 96.128 145.346 8.016 1.00101.14 P
ATOM 3 OP1 C A 127 97.029 146.480 8.350 1.00101.14 O
ATOM 4 OP2 C A 127 96.641 144.227 7.176 1.00100.78 O
ATOM 5 O5' C A 127 95.550 144.743 9.377 1.00100.45 O
ATOM 6 C5' C A 127 94.882 145.584 10.345 1.00 96.48 C
ATOM 7 C4' C A 127 95.300 145.200 11.750 1.00 93.60 C
ATOM 8 O4' C A 127 94.861 143.839 12.019 1.00 91.90 O
ATOM 9 C3' C A 127 96.803 145.226 12.034 1.00 92.58 C
ATOM 10 O3' C A 127 97.055 145.622 13.380 1.00 90.21 O
ATOM 11 C2' C A 127 97.203 143.766 11.856 1.00 92.32 C
ATOM 12 O2' C A 127 98.367 143.408 12.579 1.00 92.75 O
ATOM 13 C1' C A 127 95.970 143.054 12.406 1.00 91.92 C
ATOM 14 N1 C A 127 95.801 141.699 11.863 1.00 91.39 N
ATOM 15 C2 C A 127 96.364 140.616 12.558 1.00 91.12 C
ATOM 16 O2 C A 127 96.991 140.831 13.608 1.00 90.34 O
ATOM 17 N3 C A 127 96.212 139.366 12.066 1.00 91.94 N
ATOM 18 C4 C A 127 95.533 139.175 10.930 1.00 92.85 C
ATOM 19 N4 C A 127 95.403 137.920 10.478 1.00 93.63 N
ATOM 20 C5 C A 127 94.955 140.259 10.204 1.00 92.29 C
ATOM 21 C6 C A 127 95.110 141.490 10.701 1.00 91.55 C
ATOM 22 P G A 128 97.329 147.168 13.711 1.00 89.37 P
ATOM 23 OP1 G A 128 98.285 147.691 12.693 1.00 89.11 O
ATOM 24 OP2 G A 128 97.662 147.286 15.154 1.00 89.51 O
ATOM 25 O5' G A 128 95.904 147.840 13.461 1.00 85.86 O
TER
ATOM 1 O3' U B 125 92.075 140.107 7.182 1.00 84.59 O
ATOM 2 P U B 126 93.533 140.573 6.640 1.00 88.47 P
ATOM 3 OP1 U B 126 93.544 140.294 5.182 1.00 87.79 O
ATOM 4 OP2 U B 126 94.589 139.967 7.503 1.00 86.95 O
ATOM 5 O5' U B 126 93.543 142.166 6.840 1.00 90.86 O
ATOM 6 C5' U B 126 94.237 143.048 5.904 1.00 95.59 C
ATOM 7 C4' U B 126 93.605 144.435 5.883 1.00 98.90 C
ATOM 8 O4' U B 126 92.188 144.305 5.626 1.00101.58 O
ATOM 9 C3' U B 126 93.638 145.233 7.181 1.00100.65 C
ATOM 10 O3' U B 126 94.847 145.979 7.286 1.00100.20 O
ATOM 11 C2' U B 126 92.493 146.233 7.004 1.00102.74 C
ATOM 12 O2' U B 126 92.876 147.444 6.384 1.00103.69 O
ATOM 13 C1' U B 126 91.529 145.473 6.083 1.00104.65 C
ATOM 14 N1 U B 126 90.215 145.103 6.639 1.00108.26 N
ATOM 15 C2 U B 126 89.270 144.566 5.767 1.00109.76 C
ATOM 16 O2 U B 126 89.477 144.411 4.567 1.00109.84 O
ATOM 17 N3 U B 126 88.069 144.224 6.352 1.00110.77 N
ATOM 18 C4 U B 126 87.717 144.367 7.686 1.00110.73 C
ATOM 19 O4 U B 126 86.606 143.986 8.069 1.00110.18 O
ATOM 20 C5 U B 126 88.734 144.940 8.512 1.00110.58 C
ATOM 21 C6 U B 126 89.916 145.277 7.978 1.00109.91 C
ATOM 22 P C B 127 96.128 145.346 8.016 1.00101.14 P
ATOM 23 OP1 C B 127 97.029 146.480 8.350 1.00101.14 O
ATOM 24 OP2 C B 127 96.641 144.227 7.176 1.00100.78 O
ATOM 25 O5' C B 127 95.550 144.743 9.377 1.00100.45 O
TER
ATOM 2 P C A 127 96.128 145.346 8.016 1.00101.14 P
ATOM 3 OP1 C A 127 97.029 146.480 8.350 1.00101.14 O
ATOM 4 OP2 C A 127 96.641 144.227 7.176 1.00100.78 O
ATOM 5 O5' C A 127 95.550 144.743 9.377 1.00100.45 O
ATOM 6 C5' C A 127 94.882 145.584 10.345 1.00 96.48 C
ATOM 7 C4' C A 127 95.300 145.200 11.750 1.00 93.60 C
ATOM 8 O4' C A 127 94.861 143.839 12.019 1.00 91.90 O
ATOM 9 C3' C A 127 96.803 145.226 12.034 1.00 92.58 C
ATOM 10 O3' C A 127 97.055 145.622 13.380 1.00 90.21 O
ATOM 11 C2' C A 127 97.203 143.766 11.856 1.00 92.32 C
ATOM 12 O2' C A 127 98.367 143.408 12.579 1.00 92.75 O
ATOM 13 C1' C A 127 95.970 143.054 12.406 1.00 91.92 C
ATOM 14 N1 C A 127 95.801 141.699 11.863 1.00 91.39 N
ATOM 15 C2 C A 127 96.364 140.616 12.558 1.00 91.12 C
ATOM 16 O2 C A 127 96.991 140.831 13.608 1.00 90.34 O
ATOM 17 N3 C A 127 96.212 139.366 12.066 1.00 91.94 N
ATOM 18 C4 C A 127 95.533 139.175 10.930 1.00 92.85 C
ATOM 19 N4 C A 127 95.403 137.920 10.478 1.00 93.63 N
ATOM 20 C5 C A 127 94.955 140.259 10.204 1.00 92.29 C
ATOM 21 C6 C A 127 95.110 141.490 10.701 1.00 91.55 C
ATOM 22 P G A 128 97.329 147.168 13.711 1.00 89.37 P
ATOM 23 OP1 G A 128 98.285 147.691 12.693 1.00 89.11 O
ATOM 24 OP2 G A 128 97.662 147.286 15.154 1.00 89.51 O
ATOM 25 O5' G A 128 95.904 147.840 13.461 1.00 85.86 O
TER
ATOM 1 O3' U B 125 92.075 140.107 7.182 1.00 84.59 O
ATOM 2 P U B 126 93.533 140.573 6.640 1.00 88.47 P
ATOM 3 OP1 U B 126 93.544 140.294 5.182 1.00 87.79 O
ATOM 4 OP2 U B 126 94.589 139.967 7.503 1.00 86.95 O
ATOM 5 O5' U B 126 93.543 142.166 6.840 1.00 90.86 O
ATOM 6 C5' U B 126 94.237 143.048 5.904 1.00 95.59 C
ATOM 7 C4' U B 126 93.605 144.435 5.883 1.00 98.90 C
ATOM 8 O4' U B 126 92.188 144.305 5.626 1.00101.58 O
ATOM 9 C3' U B 126 93.638 145.233 7.181 1.00100.65 C
ATOM 10 O3' U B 126 94.847 145.979 7.286 1.00100.20 O
ATOM 11 C2' U B 126 92.493 146.233 7.004 1.00102.74 C
ATOM 12 O2' U B 126 92.876 147.444 6.384 1.00103.69 O
ATOM 13 C1' U B 126 91.529 145.473 6.083 1.00104.65 C
ATOM 14 N1 U B 126 90.215 145.103 6.639 1.00108.26 N
ATOM 15 C2 U B 126 89.270 144.566 5.767 1.00109.76 C
ATOM 16 O2 U B 126 89.477 144.411 4.567 1.00109.84 O
ATOM 17 N3 U B 126 88.069 144.224 6.352 1.00110.77 N
ATOM 18 C4 U B 126 87.717 144.367 7.686 1.00110.73 C
ATOM 19 O4 U B 126 86.606 143.986 8.069 1.00110.18 O
ATOM 20 C5 U B 126 88.734 144.940 8.512 1.00110.58 C
ATOM 21 C6 U B 126 89.916 145.277 7.978 1.00109.91 C
ATOM 22 P C B 127 96.128 145.346 8.016 1.00101.14 P
ATOM 23 OP1 C B 127 97.029 146.480 8.350 1.00101.14 O
ATOM 24 OP2 C B 127 96.641 144.227 7.176 1.00100.78 O
ATOM 25 O5' C B 127 95.550 144.743 9.377 1.00100.45 O
TER
Atoms:
C2: (96.364,140.616,12.558)
OP1: (97.029,146.480,8.350)
OP2: (96.641,144.227,7.176)
C4: (95.533,139.175,10.930)
O5': (95.550,144.743,9.377)
C3': (96.803,145.226,12.034)
C1': (95.970,143.054,12.406)
O4': (94.861,143.839,12.019)
C5': (94.882,145.584,10.345)
P: (96.128,145.346,8.016)
O2: (96.991,140.831,13.608)
C4': (95.300,145.200,11.750)
C2': (97.203,143.766,11.856)
O2': (98.367,143.408,12.579)
N1: (95.801,141.699,11.863)
N3: (96.212,139.366,12.066)
N4: (95.403,137.920,10.478)
C6: (95.110,141.490,10.701)
C5: (94.955,140.259,10.204)
O3': (97.055,145.622,13.380)
OP1: (97.029,146.480,8.350)
OP2: (96.641,144.227,7.176)
C4: (95.533,139.175,10.930)
O5': (95.550,144.743,9.377)
C3': (96.803,145.226,12.034)
C1': (95.970,143.054,12.406)
O4': (94.861,143.839,12.019)
C5': (94.882,145.584,10.345)
P: (96.128,145.346,8.016)
O2: (96.991,140.831,13.608)
C4': (95.300,145.200,11.750)
C2': (97.203,143.766,11.856)
O2': (98.367,143.408,12.579)
N1: (95.801,141.699,11.863)
N3: (96.212,139.366,12.066)
N4: (95.403,137.920,10.478)
C6: (95.110,141.490,10.701)
C5: (94.955,140.259,10.204)
O3': (97.055,145.622,13.380)
C4: (87.717,144.367,7.686)
N3: (88.069,144.224,6.352)
OP1: (93.544,140.294,5.182)
OP2: (94.589,139.967,7.503)
C2: (89.270,144.566,5.767)
C1': (91.529,145.473,6.083)
C3': (93.638,145.233,7.181)
O5': (93.543,142.166,6.840)
O4': (92.188,144.305,5.626)
C5': (94.237,143.048,5.904)
P: (93.533,140.573,6.640)
C4': (93.605,144.435,5.883)
C2': (92.493,146.233,7.004)
O2': (92.876,147.444,6.384)
N1: (90.215,145.103,6.639)
O4: (86.606,143.986,8.069)
O2: (89.477,144.411,4.567)
C6: (89.916,145.277,7.978)
C5: (88.734,144.940,8.512)
O3': (94.847,145.979,7.286)
N3: (88.069,144.224,6.352)
OP1: (93.544,140.294,5.182)
OP2: (94.589,139.967,7.503)
C2: (89.270,144.566,5.767)
C1': (91.529,145.473,6.083)
C3': (93.638,145.233,7.181)
O5': (93.543,142.166,6.840)
O4': (92.188,144.305,5.626)
C5': (94.237,143.048,5.904)
P: (93.533,140.573,6.640)
C4': (93.605,144.435,5.883)
C2': (92.493,146.233,7.004)
O2': (92.876,147.444,6.384)
N1: (90.215,145.103,6.639)
O4: (86.606,143.986,8.069)
O2: (89.477,144.411,4.567)
C6: (89.916,145.277,7.978)
C5: (88.734,144.940,8.512)
O3': (94.847,145.979,7.286)
Image (generated by PyMOL):