Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X41:X42
Extra
PDB:
ATOM 1 O3' C A 40 -22.504 -7.828 -13.360 1.00 35.03 O
ATOM 2 P G A 41 -23.083 -7.455 -14.809 1.00 35.52 P
ATOM 3 OP1 G A 41 -24.082 -8.480 -15.178 1.00 35.28 O
ATOM 4 OP2 G A 41 -21.936 -7.197 -15.707 1.00 37.14 O
ATOM 5 O5' G A 41 -23.839 -6.067 -14.563 1.00 36.63 O
ATOM 6 C5' G A 41 -25.062 -6.035 -13.835 1.00 36.18 C
ATOM 7 C4' G A 41 -25.631 -4.628 -13.813 1.00 36.56 C
ATOM 8 O4' G A 41 -24.657 -3.719 -13.245 1.00 36.89 O
ATOM 9 C3' G A 41 -25.935 -4.042 -15.181 1.00 37.03 C
ATOM 10 O3' G A 41 -27.228 -4.444 -15.607 1.00 38.09 O
ATOM 11 C2' G A 41 -25.855 -2.540 -14.923 1.00 36.31 C
ATOM 12 O2' G A 41 -27.054 -2.011 -14.391 1.00 36.30 O
ATOM 13 C1' G A 41 -24.740 -2.457 -13.883 1.00 35.48 C
ATOM 14 N9 G A 41 -23.428 -2.147 -14.446 1.00 34.35 N
ATOM 15 C8 G A 41 -22.410 -3.037 -14.698 1.00 33.52 C
ATOM 16 N7 G A 41 -21.341 -2.479 -15.195 1.00 32.84 N
ATOM 17 C5 G A 41 -21.671 -1.131 -15.275 1.00 32.92 C
ATOM 18 C6 G A 41 -20.907 -0.034 -15.739 1.00 32.88 C
ATOM 19 O6 G A 41 -19.749 -0.042 -16.180 1.00 33.83 O
ATOM 20 N1 G A 41 -21.614 1.164 -15.655 1.00 32.54 N
ATOM 21 C2 G A 41 -22.899 1.286 -15.181 1.00 31.91 C
ATOM 22 N2 G A 41 -23.414 2.524 -15.176 1.00 31.55 N
ATOM 23 N3 G A 41 -23.628 0.265 -14.742 1.00 32.37 N
ATOM 24 C4 G A 41 -22.952 -0.909 -14.819 1.00 33.19 C
ATOM 25 P U A 42 -27.464 -4.796 -17.147 1.00 39.27 P
ATOM 26 OP1 U A 42 -26.352 -5.666 -17.594 1.00 39.91 O
ATOM 27 OP2 U A 42 -27.746 -3.527 -17.850 1.00 39.26 O
ATOM 28 O5' U A 42 -28.810 -5.656 -17.124 1.00 40.96 O
TER
ATOM 1 O3' G B 41 -27.228 -4.444 -15.607 1.00 38.09 O
ATOM 2 P U B 42 -27.464 -4.796 -17.147 1.00 39.27 P
ATOM 3 OP1 U B 42 -26.352 -5.666 -17.594 1.00 39.91 O
ATOM 4 OP2 U B 42 -27.746 -3.527 -17.850 1.00 39.26 O
ATOM 5 O5' U B 42 -28.810 -5.656 -17.124 1.00 40.96 O
ATOM 6 C5' U B 42 -28.931 -6.805 -16.298 1.00 43.22 C
ATOM 7 C4' U B 42 -30.393 -7.055 -15.977 1.00 45.03 C
ATOM 8 O4' U B 42 -30.741 -6.349 -14.759 1.00 45.41 O
ATOM 9 C3' U B 42 -31.376 -6.570 -17.039 1.00 46.28 C
ATOM 10 O3' U B 42 -32.494 -7.446 -17.121 1.00 47.44 O
ATOM 11 C2' U B 42 -31.781 -5.193 -16.519 1.00 46.41 C
ATOM 12 O2' U B 42 -33.065 -4.799 -16.961 1.00 46.97 O
ATOM 13 C1' U B 42 -31.788 -5.436 -15.015 1.00 46.28 C
ATOM 14 N1 U B 42 -31.546 -4.212 -14.205 1.00 46.60 N
ATOM 15 C2 U B 42 -32.615 -3.602 -13.582 1.00 47.02 C
ATOM 16 O2 U B 42 -33.757 -4.019 -13.664 1.00 47.17 O
ATOM 17 N3 U B 42 -32.297 -2.480 -12.855 1.00 46.91 N
ATOM 18 C4 U B 42 -31.040 -1.922 -12.694 1.00 47.03 C
ATOM 19 O4 U B 42 -30.905 -0.910 -12.012 1.00 47.07 O
ATOM 20 C5 U B 42 -29.977 -2.615 -13.376 1.00 46.60 C
ATOM 21 C6 U B 42 -30.264 -3.711 -14.089 1.00 46.50 C
ATOM 22 P A B 43 -32.324 -8.946 -17.656 1.00 48.63 P
ATOM 23 OP1 A B 43 -31.045 -9.043 -18.395 1.00 48.90 O
ATOM 24 OP2 A B 43 -33.585 -9.322 -18.333 1.00 48.97 O
ATOM 25 O5' A B 43 -32.219 -9.787 -16.297 1.00 49.35 O
TER
ATOM 2 P G A 41 -23.083 -7.455 -14.809 1.00 35.52 P
ATOM 3 OP1 G A 41 -24.082 -8.480 -15.178 1.00 35.28 O
ATOM 4 OP2 G A 41 -21.936 -7.197 -15.707 1.00 37.14 O
ATOM 5 O5' G A 41 -23.839 -6.067 -14.563 1.00 36.63 O
ATOM 6 C5' G A 41 -25.062 -6.035 -13.835 1.00 36.18 C
ATOM 7 C4' G A 41 -25.631 -4.628 -13.813 1.00 36.56 C
ATOM 8 O4' G A 41 -24.657 -3.719 -13.245 1.00 36.89 O
ATOM 9 C3' G A 41 -25.935 -4.042 -15.181 1.00 37.03 C
ATOM 10 O3' G A 41 -27.228 -4.444 -15.607 1.00 38.09 O
ATOM 11 C2' G A 41 -25.855 -2.540 -14.923 1.00 36.31 C
ATOM 12 O2' G A 41 -27.054 -2.011 -14.391 1.00 36.30 O
ATOM 13 C1' G A 41 -24.740 -2.457 -13.883 1.00 35.48 C
ATOM 14 N9 G A 41 -23.428 -2.147 -14.446 1.00 34.35 N
ATOM 15 C8 G A 41 -22.410 -3.037 -14.698 1.00 33.52 C
ATOM 16 N7 G A 41 -21.341 -2.479 -15.195 1.00 32.84 N
ATOM 17 C5 G A 41 -21.671 -1.131 -15.275 1.00 32.92 C
ATOM 18 C6 G A 41 -20.907 -0.034 -15.739 1.00 32.88 C
ATOM 19 O6 G A 41 -19.749 -0.042 -16.180 1.00 33.83 O
ATOM 20 N1 G A 41 -21.614 1.164 -15.655 1.00 32.54 N
ATOM 21 C2 G A 41 -22.899 1.286 -15.181 1.00 31.91 C
ATOM 22 N2 G A 41 -23.414 2.524 -15.176 1.00 31.55 N
ATOM 23 N3 G A 41 -23.628 0.265 -14.742 1.00 32.37 N
ATOM 24 C4 G A 41 -22.952 -0.909 -14.819 1.00 33.19 C
ATOM 25 P U A 42 -27.464 -4.796 -17.147 1.00 39.27 P
ATOM 26 OP1 U A 42 -26.352 -5.666 -17.594 1.00 39.91 O
ATOM 27 OP2 U A 42 -27.746 -3.527 -17.850 1.00 39.26 O
ATOM 28 O5' U A 42 -28.810 -5.656 -17.124 1.00 40.96 O
TER
ATOM 1 O3' G B 41 -27.228 -4.444 -15.607 1.00 38.09 O
ATOM 2 P U B 42 -27.464 -4.796 -17.147 1.00 39.27 P
ATOM 3 OP1 U B 42 -26.352 -5.666 -17.594 1.00 39.91 O
ATOM 4 OP2 U B 42 -27.746 -3.527 -17.850 1.00 39.26 O
ATOM 5 O5' U B 42 -28.810 -5.656 -17.124 1.00 40.96 O
ATOM 6 C5' U B 42 -28.931 -6.805 -16.298 1.00 43.22 C
ATOM 7 C4' U B 42 -30.393 -7.055 -15.977 1.00 45.03 C
ATOM 8 O4' U B 42 -30.741 -6.349 -14.759 1.00 45.41 O
ATOM 9 C3' U B 42 -31.376 -6.570 -17.039 1.00 46.28 C
ATOM 10 O3' U B 42 -32.494 -7.446 -17.121 1.00 47.44 O
ATOM 11 C2' U B 42 -31.781 -5.193 -16.519 1.00 46.41 C
ATOM 12 O2' U B 42 -33.065 -4.799 -16.961 1.00 46.97 O
ATOM 13 C1' U B 42 -31.788 -5.436 -15.015 1.00 46.28 C
ATOM 14 N1 U B 42 -31.546 -4.212 -14.205 1.00 46.60 N
ATOM 15 C2 U B 42 -32.615 -3.602 -13.582 1.00 47.02 C
ATOM 16 O2 U B 42 -33.757 -4.019 -13.664 1.00 47.17 O
ATOM 17 N3 U B 42 -32.297 -2.480 -12.855 1.00 46.91 N
ATOM 18 C4 U B 42 -31.040 -1.922 -12.694 1.00 47.03 C
ATOM 19 O4 U B 42 -30.905 -0.910 -12.012 1.00 47.07 O
ATOM 20 C5 U B 42 -29.977 -2.615 -13.376 1.00 46.60 C
ATOM 21 C6 U B 42 -30.264 -3.711 -14.089 1.00 46.50 C
ATOM 22 P A B 43 -32.324 -8.946 -17.656 1.00 48.63 P
ATOM 23 OP1 A B 43 -31.045 -9.043 -18.395 1.00 48.90 O
ATOM 24 OP2 A B 43 -33.585 -9.322 -18.333 1.00 48.97 O
ATOM 25 O5' A B 43 -32.219 -9.787 -16.297 1.00 49.35 O
TER
Atoms:
OP1: (-24.082,-8.480,-15.178)
OP2: (-21.936,-7.197,-15.707)
C3': (-25.935,-4.042,-15.181)
C1': (-24.740,-2.457,-13.883)
C5': (-25.062,-6.035,-13.835)
O6: (-19.749,-0.042,-16.180)
O4': (-24.657,-3.719,-13.245)
C8: (-22.410,-3.037,-14.698)
C2: (-22.899,1.286,-15.181)
C6: (-20.907,-0.034,-15.739)
C5: (-21.671,-1.131,-15.275)
C4: (-22.952,-0.909,-14.819)
P: (-23.083,-7.455,-14.809)
C4': (-25.631,-4.628,-13.813)
C2': (-25.855,-2.540,-14.923)
O2': (-27.054,-2.011,-14.391)
N1: (-21.614,1.164,-15.655)
N2: (-23.414,2.524,-15.176)
N3: (-23.628,0.265,-14.742)
N7: (-21.341,-2.479,-15.195)
N9: (-23.428,-2.147,-14.446)
O5': (-23.839,-6.067,-14.563)
O3': (-27.228,-4.444,-15.607)
OP2: (-21.936,-7.197,-15.707)
C3': (-25.935,-4.042,-15.181)
C1': (-24.740,-2.457,-13.883)
C5': (-25.062,-6.035,-13.835)
O6: (-19.749,-0.042,-16.180)
O4': (-24.657,-3.719,-13.245)
C8: (-22.410,-3.037,-14.698)
C2: (-22.899,1.286,-15.181)
C6: (-20.907,-0.034,-15.739)
C5: (-21.671,-1.131,-15.275)
C4: (-22.952,-0.909,-14.819)
P: (-23.083,-7.455,-14.809)
C4': (-25.631,-4.628,-13.813)
C2': (-25.855,-2.540,-14.923)
O2': (-27.054,-2.011,-14.391)
N1: (-21.614,1.164,-15.655)
N2: (-23.414,2.524,-15.176)
N3: (-23.628,0.265,-14.742)
N7: (-21.341,-2.479,-15.195)
N9: (-23.428,-2.147,-14.446)
O5': (-23.839,-6.067,-14.563)
O3': (-27.228,-4.444,-15.607)
C4: (-31.040,-1.922,-12.694)
N3: (-32.297,-2.480,-12.855)
OP1: (-26.352,-5.666,-17.594)
OP2: (-27.746,-3.527,-17.850)
C2: (-32.615,-3.602,-13.582)
C1': (-31.788,-5.436,-15.015)
C3': (-31.376,-6.570,-17.039)
O5': (-28.810,-5.656,-17.124)
O4': (-30.741,-6.349,-14.759)
C5': (-28.931,-6.805,-16.298)
P: (-27.464,-4.796,-17.147)
C4': (-30.393,-7.055,-15.977)
C2': (-31.781,-5.193,-16.519)
O2': (-33.065,-4.799,-16.961)
N1: (-31.546,-4.212,-14.205)
O4: (-30.905,-0.910,-12.012)
O2: (-33.757,-4.019,-13.664)
C6: (-30.264,-3.711,-14.089)
C5: (-29.977,-2.615,-13.376)
O3': (-32.494,-7.446,-17.121)
N3: (-32.297,-2.480,-12.855)
OP1: (-26.352,-5.666,-17.594)
OP2: (-27.746,-3.527,-17.850)
C2: (-32.615,-3.602,-13.582)
C1': (-31.788,-5.436,-15.015)
C3': (-31.376,-6.570,-17.039)
O5': (-28.810,-5.656,-17.124)
O4': (-30.741,-6.349,-14.759)
C5': (-28.931,-6.805,-16.298)
P: (-27.464,-4.796,-17.147)
C4': (-30.393,-7.055,-15.977)
C2': (-31.781,-5.193,-16.519)
O2': (-33.065,-4.799,-16.961)
N1: (-31.546,-4.212,-14.205)
O4: (-30.905,-0.910,-12.012)
O2: (-33.757,-4.019,-13.664)
C6: (-30.264,-3.711,-14.089)
C5: (-29.977,-2.615,-13.376)
O3': (-32.494,-7.446,-17.121)
Image (generated by PyMOL):