Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11139:11140
Extra
PDB:
ATOM 1 O3' G A1138 38.957 3.373 17.652 1.00 44.97 O
ATOM 2 P A A1139 39.210 2.969 19.162 1.00 40.77 P
ATOM 3 OP1 A A1139 38.696 1.597 19.341 1.00 40.67 O
ATOM 4 OP2 A A1139 38.641 4.071 19.992 1.00 40.63 O
ATOM 5 O5' A A1139 40.798 2.958 19.231 1.00 40.67 O
ATOM 6 C5' A A1139 41.509 2.060 18.399 1.00 40.83 C
ATOM 7 C4' A A1139 42.945 2.406 18.296 1.00 40.82 C
ATOM 8 O4' A A1139 43.087 3.654 17.584 1.00 41.10 O
ATOM 9 C3' A A1139 43.639 2.650 19.597 1.00 40.43 C
ATOM 10 O3' A A1139 43.974 1.445 20.271 1.00 40.17 O
ATOM 11 C2' A A1139 44.836 3.487 19.161 1.00 40.57 C
ATOM 12 O2' A A1139 45.818 2.679 18.552 1.00 40.67 O
ATOM 13 C1' A A1139 44.193 4.370 18.085 1.00 40.95 C
ATOM 14 N9 A A1139 43.711 5.643 18.665 1.00 40.89 N
ATOM 15 C8 A A1139 42.618 5.808 19.465 1.00 40.71 C
ATOM 16 N7 A A1139 42.448 7.019 19.904 1.00 40.69 N
ATOM 17 C5 A A1139 43.520 7.710 19.366 1.00 40.86 C
ATOM 18 C6 A A1139 43.923 9.037 19.495 1.00 40.93 C
ATOM 19 N6 A A1139 43.256 9.933 20.198 1.00 40.84 N
ATOM 20 N1 A A1139 45.035 9.414 18.871 1.00 41.11 N
ATOM 21 C2 A A1139 45.683 8.493 18.169 1.00 41.21 C
ATOM 22 N3 A A1139 45.428 7.203 17.962 1.00 41.16 N
ATOM 23 C4 A A1139 44.306 6.874 18.605 1.00 40.98 C
ATOM 24 P C A1140 44.184 1.430 21.870 1.00 73.37 P
ATOM 25 OP1 C A1140 42.864 1.604 22.490 1.00 73.25 O
ATOM 26 OP2 C A1140 45.269 2.398 22.184 1.00 73.31 O
ATOM 27 O5' C A1140 44.688 -0.010 22.147 1.00 73.22 O
TER
ATOM 1 O3' A B1139 43.974 1.445 20.271 1.00 40.17 O
ATOM 2 P C B1140 44.184 1.430 21.870 1.00 73.37 P
ATOM 3 OP1 C B1140 42.864 1.604 22.490 1.00 73.25 O
ATOM 4 OP2 C B1140 45.269 2.398 22.184 1.00 73.31 O
ATOM 5 O5' C B1140 44.688 -0.010 22.147 1.00 73.22 O
ATOM 6 C5' C B1140 43.842 -1.102 22.003 1.00 73.24 C
ATOM 7 C4' C B1140 44.660 -2.330 21.863 1.00 73.22 C
ATOM 8 O4' C B1140 45.196 -2.363 20.528 1.00 73.58 O
ATOM 9 C3' C B1140 45.845 -2.402 22.821 1.00 72.94 C
ATOM 10 O3' C B1140 45.841 -3.649 23.468 1.00 72.74 O
ATOM 11 C2' C B1140 47.097 -2.253 21.929 1.00 73.16 C
ATOM 12 O2' C B1140 48.215 -3.069 22.300 1.00 73.03 O
ATOM 13 C1' C B1140 46.580 -2.628 20.549 1.00 73.54 C
ATOM 14 N1 C B1140 47.185 -1.856 19.484 1.00 73.85 N
ATOM 15 C2 C B1140 47.818 -2.550 18.465 1.00 74.11 C
ATOM 16 O2 C B1140 47.819 -3.793 18.529 1.00 74.07 O
ATOM 17 N3 C B1140 48.371 -1.843 17.450 1.00 74.42 N
ATOM 18 C4 C B1140 48.313 -0.509 17.463 1.00 74.46 C
ATOM 19 N4 C B1140 48.889 0.148 16.442 1.00 74.78 N
ATOM 20 C5 C B1140 47.675 0.215 18.521 1.00 74.18 C
ATOM 21 C6 C B1140 47.116 -0.493 19.512 1.00 73.88 C
ATOM 22 P A B1141 45.020 -3.818 24.823 1.00 43.21 P
ATOM 23 OP1 A B1141 43.754 -3.037 24.694 1.00 43.29 O
ATOM 24 OP2 A B1141 45.945 -3.496 25.937 1.00 42.92 O
ATOM 25 O5' A B1141 44.690 -5.365 24.824 1.00 43.20 O
TER
ATOM 2 P A A1139 39.210 2.969 19.162 1.00 40.77 P
ATOM 3 OP1 A A1139 38.696 1.597 19.341 1.00 40.67 O
ATOM 4 OP2 A A1139 38.641 4.071 19.992 1.00 40.63 O
ATOM 5 O5' A A1139 40.798 2.958 19.231 1.00 40.67 O
ATOM 6 C5' A A1139 41.509 2.060 18.399 1.00 40.83 C
ATOM 7 C4' A A1139 42.945 2.406 18.296 1.00 40.82 C
ATOM 8 O4' A A1139 43.087 3.654 17.584 1.00 41.10 O
ATOM 9 C3' A A1139 43.639 2.650 19.597 1.00 40.43 C
ATOM 10 O3' A A1139 43.974 1.445 20.271 1.00 40.17 O
ATOM 11 C2' A A1139 44.836 3.487 19.161 1.00 40.57 C
ATOM 12 O2' A A1139 45.818 2.679 18.552 1.00 40.67 O
ATOM 13 C1' A A1139 44.193 4.370 18.085 1.00 40.95 C
ATOM 14 N9 A A1139 43.711 5.643 18.665 1.00 40.89 N
ATOM 15 C8 A A1139 42.618 5.808 19.465 1.00 40.71 C
ATOM 16 N7 A A1139 42.448 7.019 19.904 1.00 40.69 N
ATOM 17 C5 A A1139 43.520 7.710 19.366 1.00 40.86 C
ATOM 18 C6 A A1139 43.923 9.037 19.495 1.00 40.93 C
ATOM 19 N6 A A1139 43.256 9.933 20.198 1.00 40.84 N
ATOM 20 N1 A A1139 45.035 9.414 18.871 1.00 41.11 N
ATOM 21 C2 A A1139 45.683 8.493 18.169 1.00 41.21 C
ATOM 22 N3 A A1139 45.428 7.203 17.962 1.00 41.16 N
ATOM 23 C4 A A1139 44.306 6.874 18.605 1.00 40.98 C
ATOM 24 P C A1140 44.184 1.430 21.870 1.00 73.37 P
ATOM 25 OP1 C A1140 42.864 1.604 22.490 1.00 73.25 O
ATOM 26 OP2 C A1140 45.269 2.398 22.184 1.00 73.31 O
ATOM 27 O5' C A1140 44.688 -0.010 22.147 1.00 73.22 O
TER
ATOM 1 O3' A B1139 43.974 1.445 20.271 1.00 40.17 O
ATOM 2 P C B1140 44.184 1.430 21.870 1.00 73.37 P
ATOM 3 OP1 C B1140 42.864 1.604 22.490 1.00 73.25 O
ATOM 4 OP2 C B1140 45.269 2.398 22.184 1.00 73.31 O
ATOM 5 O5' C B1140 44.688 -0.010 22.147 1.00 73.22 O
ATOM 6 C5' C B1140 43.842 -1.102 22.003 1.00 73.24 C
ATOM 7 C4' C B1140 44.660 -2.330 21.863 1.00 73.22 C
ATOM 8 O4' C B1140 45.196 -2.363 20.528 1.00 73.58 O
ATOM 9 C3' C B1140 45.845 -2.402 22.821 1.00 72.94 C
ATOM 10 O3' C B1140 45.841 -3.649 23.468 1.00 72.74 O
ATOM 11 C2' C B1140 47.097 -2.253 21.929 1.00 73.16 C
ATOM 12 O2' C B1140 48.215 -3.069 22.300 1.00 73.03 O
ATOM 13 C1' C B1140 46.580 -2.628 20.549 1.00 73.54 C
ATOM 14 N1 C B1140 47.185 -1.856 19.484 1.00 73.85 N
ATOM 15 C2 C B1140 47.818 -2.550 18.465 1.00 74.11 C
ATOM 16 O2 C B1140 47.819 -3.793 18.529 1.00 74.07 O
ATOM 17 N3 C B1140 48.371 -1.843 17.450 1.00 74.42 N
ATOM 18 C4 C B1140 48.313 -0.509 17.463 1.00 74.46 C
ATOM 19 N4 C B1140 48.889 0.148 16.442 1.00 74.78 N
ATOM 20 C5 C B1140 47.675 0.215 18.521 1.00 74.18 C
ATOM 21 C6 C B1140 47.116 -0.493 19.512 1.00 73.88 C
ATOM 22 P A B1141 45.020 -3.818 24.823 1.00 43.21 P
ATOM 23 OP1 A B1141 43.754 -3.037 24.694 1.00 43.29 O
ATOM 24 OP2 A B1141 45.945 -3.496 25.937 1.00 42.92 O
ATOM 25 O5' A B1141 44.690 -5.365 24.824 1.00 43.20 O
TER
Atoms:
OP1: (38.696,1.597,19.341)
OP2: (38.641,4.071,19.992)
C3': (43.639,2.650,19.597)
C1': (44.193,4.370,18.085)
C5': (41.509,2.060,18.399)
O4': (43.087,3.654,17.584)
C8: (42.618,5.808,19.465)
O2': (45.818,2.679,18.552)
C6: (43.923,9.037,19.495)
C5: (43.520,7.710,19.366)
C4: (44.306,6.874,18.605)
P: (39.210,2.969,19.162)
C4': (42.945,2.406,18.296)
C2': (44.836,3.487,19.161)
C2: (45.683,8.493,18.169)
N1: (45.035,9.414,18.871)
N3: (45.428,7.203,17.962)
N6: (43.256,9.933,20.198)
N7: (42.448,7.019,19.904)
N9: (43.711,5.643,18.665)
O5': (40.798,2.958,19.231)
O3': (43.974,1.445,20.271)
OP2: (38.641,4.071,19.992)
C3': (43.639,2.650,19.597)
C1': (44.193,4.370,18.085)
C5': (41.509,2.060,18.399)
O4': (43.087,3.654,17.584)
C8: (42.618,5.808,19.465)
O2': (45.818,2.679,18.552)
C6: (43.923,9.037,19.495)
C5: (43.520,7.710,19.366)
C4: (44.306,6.874,18.605)
P: (39.210,2.969,19.162)
C4': (42.945,2.406,18.296)
C2': (44.836,3.487,19.161)
C2: (45.683,8.493,18.169)
N1: (45.035,9.414,18.871)
N3: (45.428,7.203,17.962)
N6: (43.256,9.933,20.198)
N7: (42.448,7.019,19.904)
N9: (43.711,5.643,18.665)
O5': (40.798,2.958,19.231)
O3': (43.974,1.445,20.271)
C2: (47.818,-2.550,18.465)
OP1: (42.864,1.604,22.490)
OP2: (45.269,2.398,22.184)
C4: (48.313,-0.509,17.463)
O5': (44.688,-0.010,22.147)
C3': (45.845,-2.402,22.821)
C1': (46.580,-2.628,20.549)
O4': (45.196,-2.363,20.528)
C5': (43.842,-1.102,22.003)
P: (44.184,1.430,21.870)
O2: (47.819,-3.793,18.529)
C4': (44.660,-2.330,21.863)
C2': (47.097,-2.253,21.929)
O2': (48.215,-3.069,22.300)
N1: (47.185,-1.856,19.484)
N3: (48.371,-1.843,17.450)
N4: (48.889,0.148,16.442)
C6: (47.116,-0.493,19.512)
C5: (47.675,0.215,18.521)
O3': (45.841,-3.649,23.468)
OP1: (42.864,1.604,22.490)
OP2: (45.269,2.398,22.184)
C4: (48.313,-0.509,17.463)
O5': (44.688,-0.010,22.147)
C3': (45.845,-2.402,22.821)
C1': (46.580,-2.628,20.549)
O4': (45.196,-2.363,20.528)
C5': (43.842,-1.102,22.003)
P: (44.184,1.430,21.870)
O2: (47.819,-3.793,18.529)
C4': (44.660,-2.330,21.863)
C2': (47.097,-2.253,21.929)
O2': (48.215,-3.069,22.300)
N1: (47.185,-1.856,19.484)
N3: (48.371,-1.843,17.450)
N4: (48.889,0.148,16.442)
C6: (47.116,-0.493,19.512)
C5: (47.675,0.215,18.521)
O3': (45.841,-3.649,23.468)
Image (generated by PyMOL):