Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11489:11492
Extra
PDB:
ATOM 1 O3' G A1488 27.904 -21.474 123.573 1.00 44.68 O
ATOM 2 P A A1489 28.993 -22.543 123.255 1.00 49.40 P
ATOM 3 OP1 A A1489 28.338 -23.567 122.387 1.00 49.18 O
ATOM 4 OP2 A A1489 29.583 -22.971 124.556 1.00 49.89 O
ATOM 5 O5' A A1489 30.058 -21.709 122.431 1.00 49.05 O
ATOM 6 C5' A A1489 29.730 -21.108 121.205 1.00 48.60 C
ATOM 7 C4' A A1489 30.847 -20.237 120.733 1.00 48.39 C
ATOM 8 O4' A A1489 30.955 -19.071 121.590 1.00 48.62 O
ATOM 9 C3' A A1489 32.219 -20.863 120.781 1.00 48.43 C
ATOM 10 O3' A A1489 32.482 -21.680 119.674 1.00 48.10 O
ATOM 11 C2' A A1489 33.143 -19.658 120.897 1.00 48.41 C
ATOM 12 O2' A A1489 33.325 -19.024 119.633 1.00 47.95 O
ATOM 13 C1' A A1489 32.310 -18.734 121.781 1.00 48.67 C
ATOM 14 N9 A A1489 32.625 -18.912 123.209 1.00 49.18 N
ATOM 15 C8 A A1489 31.895 -19.657 124.114 1.00 49.53 C
ATOM 16 N7 A A1489 32.366 -19.631 125.346 1.00 49.98 N
ATOM 17 C5 A A1489 33.492 -18.815 125.241 1.00 49.91 C
ATOM 18 C6 A A1489 34.427 -18.416 126.200 1.00 50.26 C
ATOM 19 N6 A A1489 34.367 -18.781 127.487 1.00 50.76 N
ATOM 20 N1 A A1489 35.416 -17.603 125.803 1.00 50.09 N
ATOM 21 C2 A A1489 35.416 -17.251 124.514 1.00 49.61 C
ATOM 22 N3 A A1489 34.594 -17.569 123.504 1.00 49.24 N
ATOM 23 C4 A A1489 33.647 -18.367 123.947 1.00 49.42 C
ATOM 24 P A A1490 33.174 -23.099 119.889 1.00 42.24 P
ATOM 25 OP1 A A1490 33.527 -23.628 118.559 1.00 41.84 O
ATOM 26 OP2 A A1490 32.293 -23.876 120.728 1.00 42.57 O
ATOM 27 O5' A A1490 34.499 -22.722 120.689 1.00 42.49 O
TER
ATOM 1 O3' G B1491 39.448 -16.038 122.854 1.00 50.45 O
ATOM 2 P C B1492 38.602 -14.725 123.170 1.00 47.04 P
ATOM 3 OP1 C B1492 39.055 -14.229 124.484 1.00 47.52 O
ATOM 4 OP2 C B1492 37.168 -15.083 122.993 1.00 46.95 O
ATOM 5 O5' C B1492 39.097 -13.744 121.999 1.00 46.62 O
ATOM 6 C5' C B1492 40.488 -13.711 121.665 1.00 46.55 C
ATOM 7 C4' C B1492 40.815 -12.773 120.541 1.00 46.16 C
ATOM 8 O4' C B1492 40.605 -13.423 119.274 1.00 45.72 O
ATOM 9 C3' C B1492 40.028 -11.487 120.489 1.00 46.11 C
ATOM 10 O3' C B1492 40.656 -10.487 121.274 1.00 46.41 O
ATOM 11 C2' C B1492 40.001 -11.157 119.002 1.00 45.61 C
ATOM 12 O2' C B1492 41.161 -10.440 118.651 1.00 45.53 O
ATOM 13 C1' C B1492 40.086 -12.528 118.341 1.00 45.39 C
ATOM 14 N1 C B1492 38.785 -13.052 117.918 1.00 45.22 N
ATOM 15 C2 C B1492 38.381 -13.061 116.618 1.00 44.79 C
ATOM 16 O2 C B1492 39.136 -12.535 115.820 1.00 44.55 O
ATOM 17 N3 C B1492 37.213 -13.633 116.253 1.00 44.66 N
ATOM 18 C4 C B1492 36.441 -14.203 117.166 1.00 44.95 C
ATOM 19 N4 C B1492 35.263 -14.757 116.851 1.00 44.84 N
ATOM 20 C5 C B1492 36.835 -14.202 118.513 1.00 45.39 C
ATOM 21 C6 C B1492 37.999 -13.662 118.832 1.00 45.51 C
ATOM 22 P U B1493 39.868 -9.176 121.789 1.00 52.65 P
ATOM 23 OP1 U B1493 40.767 -8.014 121.535 1.00 52.61 O
ATOM 24 OP2 U B1493 39.396 -9.444 123.190 1.00 53.13 O
ATOM 25 O5' U B1493 38.631 -9.104 120.815 1.00 52.27 O
TER
ATOM 2 P A A1489 28.993 -22.543 123.255 1.00 49.40 P
ATOM 3 OP1 A A1489 28.338 -23.567 122.387 1.00 49.18 O
ATOM 4 OP2 A A1489 29.583 -22.971 124.556 1.00 49.89 O
ATOM 5 O5' A A1489 30.058 -21.709 122.431 1.00 49.05 O
ATOM 6 C5' A A1489 29.730 -21.108 121.205 1.00 48.60 C
ATOM 7 C4' A A1489 30.847 -20.237 120.733 1.00 48.39 C
ATOM 8 O4' A A1489 30.955 -19.071 121.590 1.00 48.62 O
ATOM 9 C3' A A1489 32.219 -20.863 120.781 1.00 48.43 C
ATOM 10 O3' A A1489 32.482 -21.680 119.674 1.00 48.10 O
ATOM 11 C2' A A1489 33.143 -19.658 120.897 1.00 48.41 C
ATOM 12 O2' A A1489 33.325 -19.024 119.633 1.00 47.95 O
ATOM 13 C1' A A1489 32.310 -18.734 121.781 1.00 48.67 C
ATOM 14 N9 A A1489 32.625 -18.912 123.209 1.00 49.18 N
ATOM 15 C8 A A1489 31.895 -19.657 124.114 1.00 49.53 C
ATOM 16 N7 A A1489 32.366 -19.631 125.346 1.00 49.98 N
ATOM 17 C5 A A1489 33.492 -18.815 125.241 1.00 49.91 C
ATOM 18 C6 A A1489 34.427 -18.416 126.200 1.00 50.26 C
ATOM 19 N6 A A1489 34.367 -18.781 127.487 1.00 50.76 N
ATOM 20 N1 A A1489 35.416 -17.603 125.803 1.00 50.09 N
ATOM 21 C2 A A1489 35.416 -17.251 124.514 1.00 49.61 C
ATOM 22 N3 A A1489 34.594 -17.569 123.504 1.00 49.24 N
ATOM 23 C4 A A1489 33.647 -18.367 123.947 1.00 49.42 C
ATOM 24 P A A1490 33.174 -23.099 119.889 1.00 42.24 P
ATOM 25 OP1 A A1490 33.527 -23.628 118.559 1.00 41.84 O
ATOM 26 OP2 A A1490 32.293 -23.876 120.728 1.00 42.57 O
ATOM 27 O5' A A1490 34.499 -22.722 120.689 1.00 42.49 O
TER
ATOM 1 O3' G B1491 39.448 -16.038 122.854 1.00 50.45 O
ATOM 2 P C B1492 38.602 -14.725 123.170 1.00 47.04 P
ATOM 3 OP1 C B1492 39.055 -14.229 124.484 1.00 47.52 O
ATOM 4 OP2 C B1492 37.168 -15.083 122.993 1.00 46.95 O
ATOM 5 O5' C B1492 39.097 -13.744 121.999 1.00 46.62 O
ATOM 6 C5' C B1492 40.488 -13.711 121.665 1.00 46.55 C
ATOM 7 C4' C B1492 40.815 -12.773 120.541 1.00 46.16 C
ATOM 8 O4' C B1492 40.605 -13.423 119.274 1.00 45.72 O
ATOM 9 C3' C B1492 40.028 -11.487 120.489 1.00 46.11 C
ATOM 10 O3' C B1492 40.656 -10.487 121.274 1.00 46.41 O
ATOM 11 C2' C B1492 40.001 -11.157 119.002 1.00 45.61 C
ATOM 12 O2' C B1492 41.161 -10.440 118.651 1.00 45.53 O
ATOM 13 C1' C B1492 40.086 -12.528 118.341 1.00 45.39 C
ATOM 14 N1 C B1492 38.785 -13.052 117.918 1.00 45.22 N
ATOM 15 C2 C B1492 38.381 -13.061 116.618 1.00 44.79 C
ATOM 16 O2 C B1492 39.136 -12.535 115.820 1.00 44.55 O
ATOM 17 N3 C B1492 37.213 -13.633 116.253 1.00 44.66 N
ATOM 18 C4 C B1492 36.441 -14.203 117.166 1.00 44.95 C
ATOM 19 N4 C B1492 35.263 -14.757 116.851 1.00 44.84 N
ATOM 20 C5 C B1492 36.835 -14.202 118.513 1.00 45.39 C
ATOM 21 C6 C B1492 37.999 -13.662 118.832 1.00 45.51 C
ATOM 22 P U B1493 39.868 -9.176 121.789 1.00 52.65 P
ATOM 23 OP1 U B1493 40.767 -8.014 121.535 1.00 52.61 O
ATOM 24 OP2 U B1493 39.396 -9.444 123.190 1.00 53.13 O
ATOM 25 O5' U B1493 38.631 -9.104 120.815 1.00 52.27 O
TER
Atoms:
OP1: (28.338,-23.567,122.387)
OP2: (29.583,-22.971,124.556)
C3': (32.219,-20.863,120.781)
C1': (32.310,-18.734,121.781)
C5': (29.730,-21.108,121.205)
O4': (30.955,-19.071,121.590)
C8: (31.895,-19.657,124.114)
O2': (33.325,-19.024,119.633)
C6: (34.427,-18.416,126.200)
C5: (33.492,-18.815,125.241)
C4: (33.647,-18.367,123.947)
P: (28.993,-22.543,123.255)
C4': (30.847,-20.237,120.733)
C2': (33.143,-19.658,120.897)
C2: (35.416,-17.251,124.514)
N1: (35.416,-17.603,125.803)
N3: (34.594,-17.569,123.504)
N6: (34.367,-18.781,127.487)
N7: (32.366,-19.631,125.346)
N9: (32.625,-18.912,123.209)
O5': (30.058,-21.709,122.431)
O3': (32.482,-21.680,119.674)
OP2: (29.583,-22.971,124.556)
C3': (32.219,-20.863,120.781)
C1': (32.310,-18.734,121.781)
C5': (29.730,-21.108,121.205)
O4': (30.955,-19.071,121.590)
C8: (31.895,-19.657,124.114)
O2': (33.325,-19.024,119.633)
C6: (34.427,-18.416,126.200)
C5: (33.492,-18.815,125.241)
C4: (33.647,-18.367,123.947)
P: (28.993,-22.543,123.255)
C4': (30.847,-20.237,120.733)
C2': (33.143,-19.658,120.897)
C2: (35.416,-17.251,124.514)
N1: (35.416,-17.603,125.803)
N3: (34.594,-17.569,123.504)
N6: (34.367,-18.781,127.487)
N7: (32.366,-19.631,125.346)
N9: (32.625,-18.912,123.209)
O5': (30.058,-21.709,122.431)
O3': (32.482,-21.680,119.674)
C2: (38.381,-13.061,116.618)
OP1: (39.055,-14.229,124.484)
OP2: (37.168,-15.083,122.993)
C4: (36.441,-14.203,117.166)
O5': (39.097,-13.744,121.999)
C3': (40.028,-11.487,120.489)
C1': (40.086,-12.528,118.341)
O4': (40.605,-13.423,119.274)
C5': (40.488,-13.711,121.665)
P: (38.602,-14.725,123.170)
O2: (39.136,-12.535,115.820)
C4': (40.815,-12.773,120.541)
C2': (40.001,-11.157,119.002)
O2': (41.161,-10.440,118.651)
N1: (38.785,-13.052,117.918)
N3: (37.213,-13.633,116.253)
N4: (35.263,-14.757,116.851)
C6: (37.999,-13.662,118.832)
C5: (36.835,-14.202,118.513)
O3': (40.656,-10.487,121.274)
OP1: (39.055,-14.229,124.484)
OP2: (37.168,-15.083,122.993)
C4: (36.441,-14.203,117.166)
O5': (39.097,-13.744,121.999)
C3': (40.028,-11.487,120.489)
C1': (40.086,-12.528,118.341)
O4': (40.605,-13.423,119.274)
C5': (40.488,-13.711,121.665)
P: (38.602,-14.725,123.170)
O2: (39.136,-12.535,115.820)
C4': (40.815,-12.773,120.541)
C2': (40.001,-11.157,119.002)
O2': (41.161,-10.440,118.651)
N1: (38.785,-13.052,117.918)
N3: (37.213,-13.633,116.253)
N4: (35.263,-14.757,116.851)
C6: (37.999,-13.662,118.832)
C5: (36.835,-14.202,118.513)
O3': (40.656,-10.487,121.274)
Image (generated by PyMOL):