Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12392:11081
Extra
PDB:
ATOM 1 O3' G A2391 38.150 -43.778 43.826 1.00 43.22 O
ATOM 2 P A A2392 36.944 -42.808 44.267 1.00 39.22 P
ATOM 3 OP1 A A2392 36.262 -43.506 45.374 1.00 39.23 O
ATOM 4 OP2 A A2392 36.177 -42.451 43.070 1.00 39.35 O
ATOM 5 O5' A A2392 37.695 -41.507 44.815 1.00 38.83 O
ATOM 6 C5' A A2392 38.475 -41.537 45.994 1.00 38.65 C
ATOM 7 C4' A A2392 39.200 -40.249 46.173 1.00 38.35 C
ATOM 8 O4' A A2392 40.027 -40.001 45.031 1.00 38.44 O
ATOM 9 C3' A A2392 38.334 -39.038 46.260 1.00 38.11 C
ATOM 10 O3' A A2392 37.818 -38.858 47.547 1.00 37.92 O
ATOM 11 C2' A A2392 39.242 -37.898 45.772 1.00 37.94 C
ATOM 12 O2' A A2392 40.065 -37.358 46.824 1.00 37.69 O
ATOM 13 C1' A A2392 40.118 -38.627 44.768 1.00 38.21 C
ATOM 14 N9 A A2392 39.678 -38.428 43.397 1.00 38.38 N
ATOM 15 C8 A A2392 38.993 -39.384 42.762 1.00 38.68 C
ATOM 16 N7 A A2392 38.676 -39.075 41.537 1.00 38.82 N
ATOM 17 C5 A A2392 39.237 -37.837 41.350 1.00 38.60 C
ATOM 18 C6 A A2392 39.238 -36.994 40.269 1.00 38.62 C
ATOM 19 N6 A A2392 38.699 -37.262 39.115 1.00 38.89 N
ATOM 20 N1 A A2392 39.838 -35.841 40.344 1.00 38.38 N
ATOM 21 C2 A A2392 40.392 -35.579 41.502 1.00 38.13 C
ATOM 22 N3 A A2392 40.457 -36.291 42.616 1.00 38.08 N
ATOM 23 C4 A A2392 39.843 -37.441 42.480 1.00 38.33 C
ATOM 24 P U A2393 36.272 -38.527 47.725 1.00 37.49 P
ATOM 25 OP1 U A2393 35.970 -38.595 49.196 1.00 37.33 O
ATOM 26 OP2 U A2393 35.538 -39.432 46.780 1.00 37.81 O
ATOM 27 O5' U A2393 36.190 -37.006 47.233 1.00 37.27 O
TER
ATOM 1 O3' A B1080 41.431 -32.244 40.931 1.00 35.14 O
ATOM 2 P C B1081 42.816 -31.971 41.650 1.00 37.22 P
ATOM 3 OP1 C B1081 43.173 -33.243 42.339 1.00 37.31 O
ATOM 4 OP2 C B1081 42.650 -30.740 42.443 1.00 36.92 O
ATOM 5 O5' C B1081 43.830 -31.660 40.460 1.00 37.36 O
ATOM 6 C5' C B1081 44.236 -32.636 39.547 1.00 37.66 C
ATOM 7 C4' C B1081 44.693 -32.017 38.249 1.00 37.79 C
ATOM 8 O4' C B1081 43.646 -31.185 37.649 1.00 37.78 O
ATOM 9 C3' C B1081 45.857 -31.063 38.326 1.00 37.63 C
ATOM 10 O3' C B1081 47.083 -31.707 38.559 1.00 37.70 O
ATOM 11 C2' C B1081 45.786 -30.390 36.972 1.00 37.78 C
ATOM 12 O2' C B1081 46.301 -31.254 35.991 1.00 38.09 O
ATOM 13 C1' C B1081 44.264 -30.242 36.769 1.00 37.80 C
ATOM 14 N1 C B1081 43.835 -28.871 37.125 1.00 37.54 N
ATOM 15 C2 C B1081 44.087 -27.811 36.247 1.00 37.56 C
ATOM 16 O2 C B1081 44.576 -28.119 35.194 1.00 37.80 O
ATOM 17 N3 C B1081 43.825 -26.520 36.531 1.00 37.35 N
ATOM 18 C4 C B1081 43.327 -26.302 37.750 1.00 37.10 C
ATOM 19 N4 C B1081 43.042 -25.080 38.151 1.00 36.89 N
ATOM 20 C5 C B1081 43.055 -27.317 38.689 1.00 37.06 C
ATOM 21 C6 C B1081 43.326 -28.586 38.349 1.00 37.28 C
ATOM 22 P U B1082 48.127 -31.078 39.607 1.00 34.12 P
ATOM 23 OP1 U B1082 49.056 -32.155 39.924 1.00 34.25 O
ATOM 24 OP2 U B1082 47.376 -30.454 40.698 1.00 33.84 O
ATOM 25 O5' U B1082 48.842 -29.941 38.751 1.00 34.11 O
TER
ATOM 2 P A A2392 36.944 -42.808 44.267 1.00 39.22 P
ATOM 3 OP1 A A2392 36.262 -43.506 45.374 1.00 39.23 O
ATOM 4 OP2 A A2392 36.177 -42.451 43.070 1.00 39.35 O
ATOM 5 O5' A A2392 37.695 -41.507 44.815 1.00 38.83 O
ATOM 6 C5' A A2392 38.475 -41.537 45.994 1.00 38.65 C
ATOM 7 C4' A A2392 39.200 -40.249 46.173 1.00 38.35 C
ATOM 8 O4' A A2392 40.027 -40.001 45.031 1.00 38.44 O
ATOM 9 C3' A A2392 38.334 -39.038 46.260 1.00 38.11 C
ATOM 10 O3' A A2392 37.818 -38.858 47.547 1.00 37.92 O
ATOM 11 C2' A A2392 39.242 -37.898 45.772 1.00 37.94 C
ATOM 12 O2' A A2392 40.065 -37.358 46.824 1.00 37.69 O
ATOM 13 C1' A A2392 40.118 -38.627 44.768 1.00 38.21 C
ATOM 14 N9 A A2392 39.678 -38.428 43.397 1.00 38.38 N
ATOM 15 C8 A A2392 38.993 -39.384 42.762 1.00 38.68 C
ATOM 16 N7 A A2392 38.676 -39.075 41.537 1.00 38.82 N
ATOM 17 C5 A A2392 39.237 -37.837 41.350 1.00 38.60 C
ATOM 18 C6 A A2392 39.238 -36.994 40.269 1.00 38.62 C
ATOM 19 N6 A A2392 38.699 -37.262 39.115 1.00 38.89 N
ATOM 20 N1 A A2392 39.838 -35.841 40.344 1.00 38.38 N
ATOM 21 C2 A A2392 40.392 -35.579 41.502 1.00 38.13 C
ATOM 22 N3 A A2392 40.457 -36.291 42.616 1.00 38.08 N
ATOM 23 C4 A A2392 39.843 -37.441 42.480 1.00 38.33 C
ATOM 24 P U A2393 36.272 -38.527 47.725 1.00 37.49 P
ATOM 25 OP1 U A2393 35.970 -38.595 49.196 1.00 37.33 O
ATOM 26 OP2 U A2393 35.538 -39.432 46.780 1.00 37.81 O
ATOM 27 O5' U A2393 36.190 -37.006 47.233 1.00 37.27 O
TER
ATOM 1 O3' A B1080 41.431 -32.244 40.931 1.00 35.14 O
ATOM 2 P C B1081 42.816 -31.971 41.650 1.00 37.22 P
ATOM 3 OP1 C B1081 43.173 -33.243 42.339 1.00 37.31 O
ATOM 4 OP2 C B1081 42.650 -30.740 42.443 1.00 36.92 O
ATOM 5 O5' C B1081 43.830 -31.660 40.460 1.00 37.36 O
ATOM 6 C5' C B1081 44.236 -32.636 39.547 1.00 37.66 C
ATOM 7 C4' C B1081 44.693 -32.017 38.249 1.00 37.79 C
ATOM 8 O4' C B1081 43.646 -31.185 37.649 1.00 37.78 O
ATOM 9 C3' C B1081 45.857 -31.063 38.326 1.00 37.63 C
ATOM 10 O3' C B1081 47.083 -31.707 38.559 1.00 37.70 O
ATOM 11 C2' C B1081 45.786 -30.390 36.972 1.00 37.78 C
ATOM 12 O2' C B1081 46.301 -31.254 35.991 1.00 38.09 O
ATOM 13 C1' C B1081 44.264 -30.242 36.769 1.00 37.80 C
ATOM 14 N1 C B1081 43.835 -28.871 37.125 1.00 37.54 N
ATOM 15 C2 C B1081 44.087 -27.811 36.247 1.00 37.56 C
ATOM 16 O2 C B1081 44.576 -28.119 35.194 1.00 37.80 O
ATOM 17 N3 C B1081 43.825 -26.520 36.531 1.00 37.35 N
ATOM 18 C4 C B1081 43.327 -26.302 37.750 1.00 37.10 C
ATOM 19 N4 C B1081 43.042 -25.080 38.151 1.00 36.89 N
ATOM 20 C5 C B1081 43.055 -27.317 38.689 1.00 37.06 C
ATOM 21 C6 C B1081 43.326 -28.586 38.349 1.00 37.28 C
ATOM 22 P U B1082 48.127 -31.078 39.607 1.00 34.12 P
ATOM 23 OP1 U B1082 49.056 -32.155 39.924 1.00 34.25 O
ATOM 24 OP2 U B1082 47.376 -30.454 40.698 1.00 33.84 O
ATOM 25 O5' U B1082 48.842 -29.941 38.751 1.00 34.11 O
TER
Atoms:
OP1: (36.262,-43.506,45.374)
OP2: (36.177,-42.451,43.070)
C3': (38.334,-39.038,46.260)
C1': (40.118,-38.627,44.768)
C5': (38.475,-41.537,45.994)
O4': (40.027,-40.001,45.031)
C8: (38.993,-39.384,42.762)
O2': (40.065,-37.358,46.824)
C6: (39.238,-36.994,40.269)
C5: (39.237,-37.837,41.350)
C4: (39.843,-37.441,42.480)
P: (36.944,-42.808,44.267)
C4': (39.200,-40.249,46.173)
C2': (39.242,-37.898,45.772)
C2: (40.392,-35.579,41.502)
N1: (39.838,-35.841,40.344)
N3: (40.457,-36.291,42.616)
N6: (38.699,-37.262,39.115)
N7: (38.676,-39.075,41.537)
N9: (39.678,-38.428,43.397)
O5': (37.695,-41.507,44.815)
O3': (37.818,-38.858,47.547)
OP2: (36.177,-42.451,43.070)
C3': (38.334,-39.038,46.260)
C1': (40.118,-38.627,44.768)
C5': (38.475,-41.537,45.994)
O4': (40.027,-40.001,45.031)
C8: (38.993,-39.384,42.762)
O2': (40.065,-37.358,46.824)
C6: (39.238,-36.994,40.269)
C5: (39.237,-37.837,41.350)
C4: (39.843,-37.441,42.480)
P: (36.944,-42.808,44.267)
C4': (39.200,-40.249,46.173)
C2': (39.242,-37.898,45.772)
C2: (40.392,-35.579,41.502)
N1: (39.838,-35.841,40.344)
N3: (40.457,-36.291,42.616)
N6: (38.699,-37.262,39.115)
N7: (38.676,-39.075,41.537)
N9: (39.678,-38.428,43.397)
O5': (37.695,-41.507,44.815)
O3': (37.818,-38.858,47.547)
C2: (44.087,-27.811,36.247)
OP1: (43.173,-33.243,42.339)
OP2: (42.650,-30.740,42.443)
C4: (43.327,-26.302,37.750)
O5': (43.830,-31.660,40.460)
C3': (45.857,-31.063,38.326)
C1': (44.264,-30.242,36.769)
O4': (43.646,-31.185,37.649)
C5': (44.236,-32.636,39.547)
P: (42.816,-31.971,41.650)
O2: (44.576,-28.119,35.194)
C4': (44.693,-32.017,38.249)
C2': (45.786,-30.390,36.972)
O2': (46.301,-31.254,35.991)
N1: (43.835,-28.871,37.125)
N3: (43.825,-26.520,36.531)
N4: (43.042,-25.080,38.151)
C6: (43.326,-28.586,38.349)
C5: (43.055,-27.317,38.689)
O3': (47.083,-31.707,38.559)
OP1: (43.173,-33.243,42.339)
OP2: (42.650,-30.740,42.443)
C4: (43.327,-26.302,37.750)
O5': (43.830,-31.660,40.460)
C3': (45.857,-31.063,38.326)
C1': (44.264,-30.242,36.769)
O4': (43.646,-31.185,37.649)
C5': (44.236,-32.636,39.547)
P: (42.816,-31.971,41.650)
O2: (44.576,-28.119,35.194)
C4': (44.693,-32.017,38.249)
C2': (45.786,-30.390,36.972)
O2': (46.301,-31.254,35.991)
N1: (43.835,-28.871,37.125)
N3: (43.825,-26.520,36.531)
N4: (43.042,-25.080,38.151)
C6: (43.326,-28.586,38.349)
C5: (43.055,-27.317,38.689)
O3': (47.083,-31.707,38.559)
Image (generated by PyMOL):