Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0299:0300
Extra
PDB:
ATOM 1 O3' U A 298 -4.235 145.742 37.453 1.00 66.63 O
ATOM 2 P C A 299 -3.748 146.490 38.788 1.00 69.27 P
ATOM 3 OP1 C A 299 -4.528 147.747 38.936 1.00 68.33 O
ATOM 4 OP2 C A 299 -2.267 146.554 38.739 1.00 70.54 O
ATOM 5 O5' C A 299 -4.170 145.490 39.954 1.00 67.50 O
ATOM 6 C5' C A 299 -5.556 145.213 40.215 1.00 66.26 C
ATOM 7 C4' C A 299 -5.688 144.114 41.237 1.00 65.92 C
ATOM 8 O4' C A 299 -5.166 142.872 40.701 1.00 66.54 O
ATOM 9 C3' C A 299 -4.894 144.321 42.509 1.00 65.75 C
ATOM 10 O3' C A 299 -5.560 145.199 43.400 1.00 67.08 O
ATOM 11 C2' C A 299 -4.764 142.899 43.038 1.00 65.90 C
ATOM 12 O2' C A 299 -5.940 142.414 43.653 1.00 65.68 O
ATOM 13 C1' C A 299 -4.551 142.125 41.740 1.00 65.63 C
ATOM 14 N1 C A 299 -3.128 141.934 41.400 1.00 65.69 N
ATOM 15 C2 C A 299 -2.464 140.786 41.870 1.00 64.53 C
ATOM 16 O2 C A 299 -3.080 139.976 42.582 1.00 63.96 O
ATOM 17 N3 C A 299 -1.169 140.591 41.534 1.00 64.13 N
ATOM 18 C4 C A 299 -0.534 141.483 40.769 1.00 64.64 C
ATOM 19 N4 C A 299 0.736 141.239 40.448 1.00 63.71 N
ATOM 20 C5 C A 299 -1.177 142.665 40.294 1.00 65.16 C
ATOM 21 C6 C A 299 -2.460 142.850 40.632 1.00 65.47 C
ATOM 22 P U A 300 -4.702 146.043 44.459 1.00 68.59 P
ATOM 23 OP1 U A 300 -5.598 146.931 45.244 1.00 68.59 O
ATOM 24 OP2 U A 300 -3.568 146.632 43.700 1.00 68.96 O
ATOM 25 O5' U A 300 -4.150 144.927 45.452 1.00 68.98 O
TER
ATOM 1 O3' C B 299 -5.560 145.199 43.400 1.00 67.08 O
ATOM 2 P U B 300 -4.702 146.043 44.459 1.00 68.59 P
ATOM 3 OP1 U B 300 -5.598 146.931 45.244 1.00 68.59 O
ATOM 4 OP2 U B 300 -3.568 146.632 43.700 1.00 68.96 O
ATOM 5 O5' U B 300 -4.150 144.927 45.452 1.00 68.98 O
ATOM 6 C5' U B 300 -5.052 144.199 46.315 1.00 68.50 C
ATOM 7 C4' U B 300 -4.287 143.231 47.187 1.00 67.28 C
ATOM 8 O4' U B 300 -3.721 142.173 46.372 1.00 67.89 O
ATOM 9 C3' U B 300 -3.095 143.826 47.912 1.00 66.06 C
ATOM 10 O3' U B 300 -3.481 144.481 49.103 1.00 64.21 O
ATOM 11 C2' U B 300 -2.231 142.604 48.168 1.00 66.82 C
ATOM 12 O2' U B 300 -2.706 141.842 49.258 1.00 67.57 O
ATOM 13 C1' U B 300 -2.435 141.827 46.864 1.00 67.58 C
ATOM 14 N1 U B 300 -1.443 142.169 45.831 1.00 68.04 N
ATOM 15 C2 U B 300 -0.252 141.460 45.812 1.00 68.79 C
ATOM 16 O2 U B 300 0.008 140.570 46.605 1.00 69.25 O
ATOM 17 N3 U B 300 0.628 141.835 44.827 1.00 69.56 N
ATOM 18 C4 U B 300 0.449 142.828 43.882 1.00 68.91 C
ATOM 19 O4 U B 300 1.352 143.069 43.079 1.00 68.67 O
ATOM 20 C5 U B 300 -0.805 143.511 43.965 1.00 67.82 C
ATOM 21 C6 U B 300 -1.683 143.169 44.909 1.00 67.47 C
ATOM 22 P U B 301 -2.540 145.626 49.709 1.00 66.12 P
ATOM 23 OP1 U B 301 -3.205 146.191 50.917 1.00 65.56 O
ATOM 24 OP2 U B 301 -2.153 146.531 48.595 1.00 65.52 O
ATOM 25 O5' U B 301 -1.239 144.824 50.162 1.00 65.54 O
TER
ATOM 2 P C A 299 -3.748 146.490 38.788 1.00 69.27 P
ATOM 3 OP1 C A 299 -4.528 147.747 38.936 1.00 68.33 O
ATOM 4 OP2 C A 299 -2.267 146.554 38.739 1.00 70.54 O
ATOM 5 O5' C A 299 -4.170 145.490 39.954 1.00 67.50 O
ATOM 6 C5' C A 299 -5.556 145.213 40.215 1.00 66.26 C
ATOM 7 C4' C A 299 -5.688 144.114 41.237 1.00 65.92 C
ATOM 8 O4' C A 299 -5.166 142.872 40.701 1.00 66.54 O
ATOM 9 C3' C A 299 -4.894 144.321 42.509 1.00 65.75 C
ATOM 10 O3' C A 299 -5.560 145.199 43.400 1.00 67.08 O
ATOM 11 C2' C A 299 -4.764 142.899 43.038 1.00 65.90 C
ATOM 12 O2' C A 299 -5.940 142.414 43.653 1.00 65.68 O
ATOM 13 C1' C A 299 -4.551 142.125 41.740 1.00 65.63 C
ATOM 14 N1 C A 299 -3.128 141.934 41.400 1.00 65.69 N
ATOM 15 C2 C A 299 -2.464 140.786 41.870 1.00 64.53 C
ATOM 16 O2 C A 299 -3.080 139.976 42.582 1.00 63.96 O
ATOM 17 N3 C A 299 -1.169 140.591 41.534 1.00 64.13 N
ATOM 18 C4 C A 299 -0.534 141.483 40.769 1.00 64.64 C
ATOM 19 N4 C A 299 0.736 141.239 40.448 1.00 63.71 N
ATOM 20 C5 C A 299 -1.177 142.665 40.294 1.00 65.16 C
ATOM 21 C6 C A 299 -2.460 142.850 40.632 1.00 65.47 C
ATOM 22 P U A 300 -4.702 146.043 44.459 1.00 68.59 P
ATOM 23 OP1 U A 300 -5.598 146.931 45.244 1.00 68.59 O
ATOM 24 OP2 U A 300 -3.568 146.632 43.700 1.00 68.96 O
ATOM 25 O5' U A 300 -4.150 144.927 45.452 1.00 68.98 O
TER
ATOM 1 O3' C B 299 -5.560 145.199 43.400 1.00 67.08 O
ATOM 2 P U B 300 -4.702 146.043 44.459 1.00 68.59 P
ATOM 3 OP1 U B 300 -5.598 146.931 45.244 1.00 68.59 O
ATOM 4 OP2 U B 300 -3.568 146.632 43.700 1.00 68.96 O
ATOM 5 O5' U B 300 -4.150 144.927 45.452 1.00 68.98 O
ATOM 6 C5' U B 300 -5.052 144.199 46.315 1.00 68.50 C
ATOM 7 C4' U B 300 -4.287 143.231 47.187 1.00 67.28 C
ATOM 8 O4' U B 300 -3.721 142.173 46.372 1.00 67.89 O
ATOM 9 C3' U B 300 -3.095 143.826 47.912 1.00 66.06 C
ATOM 10 O3' U B 300 -3.481 144.481 49.103 1.00 64.21 O
ATOM 11 C2' U B 300 -2.231 142.604 48.168 1.00 66.82 C
ATOM 12 O2' U B 300 -2.706 141.842 49.258 1.00 67.57 O
ATOM 13 C1' U B 300 -2.435 141.827 46.864 1.00 67.58 C
ATOM 14 N1 U B 300 -1.443 142.169 45.831 1.00 68.04 N
ATOM 15 C2 U B 300 -0.252 141.460 45.812 1.00 68.79 C
ATOM 16 O2 U B 300 0.008 140.570 46.605 1.00 69.25 O
ATOM 17 N3 U B 300 0.628 141.835 44.827 1.00 69.56 N
ATOM 18 C4 U B 300 0.449 142.828 43.882 1.00 68.91 C
ATOM 19 O4 U B 300 1.352 143.069 43.079 1.00 68.67 O
ATOM 20 C5 U B 300 -0.805 143.511 43.965 1.00 67.82 C
ATOM 21 C6 U B 300 -1.683 143.169 44.909 1.00 67.47 C
ATOM 22 P U B 301 -2.540 145.626 49.709 1.00 66.12 P
ATOM 23 OP1 U B 301 -3.205 146.191 50.917 1.00 65.56 O
ATOM 24 OP2 U B 301 -2.153 146.531 48.595 1.00 65.52 O
ATOM 25 O5' U B 301 -1.239 144.824 50.162 1.00 65.54 O
TER
Atoms:
C2: (-2.464,140.786,41.870)
OP1: (-4.528,147.747,38.936)
OP2: (-2.267,146.554,38.739)
C4: (-0.534,141.483,40.769)
O5': (-4.170,145.490,39.954)
C3': (-4.894,144.321,42.509)
C1': (-4.551,142.125,41.740)
O4': (-5.166,142.872,40.701)
C5': (-5.556,145.213,40.215)
P: (-3.748,146.490,38.788)
O2: (-3.080,139.976,42.582)
C4': (-5.688,144.114,41.237)
C2': (-4.764,142.899,43.038)
O2': (-5.940,142.414,43.653)
N1: (-3.128,141.934,41.400)
N3: (-1.169,140.591,41.534)
N4: (0.736,141.239,40.448)
C6: (-2.460,142.850,40.632)
C5: (-1.177,142.665,40.294)
O3': (-5.560,145.199,43.400)
OP1: (-4.528,147.747,38.936)
OP2: (-2.267,146.554,38.739)
C4: (-0.534,141.483,40.769)
O5': (-4.170,145.490,39.954)
C3': (-4.894,144.321,42.509)
C1': (-4.551,142.125,41.740)
O4': (-5.166,142.872,40.701)
C5': (-5.556,145.213,40.215)
P: (-3.748,146.490,38.788)
O2: (-3.080,139.976,42.582)
C4': (-5.688,144.114,41.237)
C2': (-4.764,142.899,43.038)
O2': (-5.940,142.414,43.653)
N1: (-3.128,141.934,41.400)
N3: (-1.169,140.591,41.534)
N4: (0.736,141.239,40.448)
C6: (-2.460,142.850,40.632)
C5: (-1.177,142.665,40.294)
O3': (-5.560,145.199,43.400)
C4: (0.449,142.828,43.882)
N3: (0.628,141.835,44.827)
OP1: (-5.598,146.931,45.244)
OP2: (-3.568,146.632,43.700)
C2: (-0.252,141.460,45.812)
C1': (-2.435,141.827,46.864)
C3': (-3.095,143.826,47.912)
O5': (-4.150,144.927,45.452)
O4': (-3.721,142.173,46.372)
C5': (-5.052,144.199,46.315)
P: (-4.702,146.043,44.459)
C4': (-4.287,143.231,47.187)
C2': (-2.231,142.604,48.168)
O2': (-2.706,141.842,49.258)
N1: (-1.443,142.169,45.831)
O4: (1.352,143.069,43.079)
O2: (0.008,140.570,46.605)
C6: (-1.683,143.169,44.909)
C5: (-0.805,143.511,43.965)
O3': (-3.481,144.481,49.103)
N3: (0.628,141.835,44.827)
OP1: (-5.598,146.931,45.244)
OP2: (-3.568,146.632,43.700)
C2: (-0.252,141.460,45.812)
C1': (-2.435,141.827,46.864)
C3': (-3.095,143.826,47.912)
O5': (-4.150,144.927,45.452)
O4': (-3.721,142.173,46.372)
C5': (-5.052,144.199,46.315)
P: (-4.702,146.043,44.459)
C4': (-4.287,143.231,47.187)
C2': (-2.231,142.604,48.168)
O2': (-2.706,141.842,49.258)
N1: (-1.443,142.169,45.831)
O4: (1.352,143.069,43.079)
O2: (0.008,140.570,46.605)
C6: (-1.683,143.169,44.909)
C5: (-0.805,143.511,43.965)
O3': (-3.481,144.481,49.103)
Image (generated by PyMOL):