Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11935:11936
Extra
PDB:
ATOM 1 O3' U A1934 -11.102 13.719 77.259 1.00 45.48 O
ATOM 2 P C A1935 -10.609 12.868 78.549 1.00 45.96 P
ATOM 3 OP1 C A1935 -11.303 11.560 78.522 1.00 45.92 O
ATOM 4 OP2 C A1935 -10.747 13.733 79.736 1.00 46.20 O
ATOM 5 O5' C A1935 -9.079 12.659 78.272 1.00 45.55 O
ATOM 6 C5' C A1935 -8.614 11.672 77.385 1.00 45.24 C
ATOM 7 C4' C A1935 -7.173 11.471 77.619 1.00 44.90 C
ATOM 8 O4' C A1935 -6.487 12.749 77.488 1.00 44.93 O
ATOM 9 C3' C A1935 -6.821 11.047 79.024 1.00 44.83 C
ATOM 10 O3' C A1935 -7.044 9.683 79.259 1.00 44.70 O
ATOM 11 C2' C A1935 -5.373 11.434 79.099 1.00 44.57 C
ATOM 12 O2' C A1935 -4.620 10.540 78.319 1.00 44.23 O
ATOM 13 C1' C A1935 -5.397 12.776 78.385 1.00 44.74 C
ATOM 14 N1 C A1935 -5.556 13.912 79.326 1.00 45.01 N
ATOM 15 C2 C A1935 -4.434 14.315 80.061 1.00 44.88 C
ATOM 16 O2 C A1935 -3.388 13.681 79.906 1.00 44.55 O
ATOM 17 N3 C A1935 -4.495 15.366 80.927 1.00 45.13 N
ATOM 18 C4 C A1935 -5.629 16.036 81.044 1.00 45.50 C
ATOM 19 N4 C A1935 -5.678 17.061 81.859 1.00 45.76 N
ATOM 20 C5 C A1935 -6.766 15.670 80.297 1.00 45.64 C
ATOM 21 C6 C A1935 -6.691 14.623 79.448 1.00 45.39 C
ATOM 22 P U A1936 -7.411 9.178 80.732 1.00 42.81 P
ATOM 23 OP1 U A1936 -7.446 7.704 80.688 1.00 42.62 O
ATOM 24 OP2 U A1936 -8.628 9.920 81.184 1.00 43.22 O
ATOM 25 O5' U A1936 -6.173 9.655 81.586 1.00 42.66 O
TER
ATOM 1 O3' C B1935 -7.044 9.683 79.259 1.00 44.70 O
ATOM 2 P U B1936 -7.411 9.178 80.732 1.00 42.81 P
ATOM 3 OP1 U B1936 -7.446 7.704 80.688 1.00 42.62 O
ATOM 4 OP2 U B1936 -8.628 9.920 81.184 1.00 43.22 O
ATOM 5 O5' U B1936 -6.173 9.655 81.586 1.00 42.66 O
ATOM 6 C5' U B1936 -4.877 9.159 81.347 1.00 42.30 C
ATOM 7 C4' U B1936 -3.918 9.737 82.327 1.00 42.25 C
ATOM 8 O4' U B1936 -3.700 11.143 82.041 1.00 42.38 O
ATOM 9 C3' U B1936 -4.366 9.711 83.788 1.00 42.46 C
ATOM 10 O3' U B1936 -4.213 8.412 84.389 1.00 42.31 O
ATOM 11 C2' U B1936 -3.470 10.790 84.383 1.00 42.48 C
ATOM 12 O2' U B1936 -2.135 10.301 84.535 1.00 42.16 O
ATOM 13 C1' U B1936 -3.491 11.838 83.250 1.00 42.54 C
ATOM 14 N1 U B1936 -4.607 12.820 83.422 1.00 42.94 N
ATOM 15 C2 U B1936 -4.446 13.995 84.175 1.00 43.16 C
ATOM 16 O2 U B1936 -3.421 14.325 84.741 1.00 43.06 O
ATOM 17 N3 U B1936 -5.532 14.809 84.276 1.00 43.54 N
ATOM 18 C4 U B1936 -6.751 14.591 83.725 1.00 43.72 C
ATOM 19 O4 U B1936 -7.609 15.432 83.910 1.00 44.07 O
ATOM 20 C5 U B1936 -6.881 13.417 82.963 1.00 43.49 C
ATOM 21 C6 U B1936 -5.837 12.602 82.844 1.00 43.12 C
ATOM 22 P G B1937 -4.815 8.059 85.852 1.00 41.87 P
ATOM 23 OP1 G B1937 -4.544 6.631 86.099 1.00 41.66 O
ATOM 24 OP2 G B1937 -6.185 8.510 85.873 1.00 42.22 O
ATOM 25 O5' G B1937 -3.946 8.958 86.833 1.00 41.91 O
TER
ATOM 2 P C A1935 -10.609 12.868 78.549 1.00 45.96 P
ATOM 3 OP1 C A1935 -11.303 11.560 78.522 1.00 45.92 O
ATOM 4 OP2 C A1935 -10.747 13.733 79.736 1.00 46.20 O
ATOM 5 O5' C A1935 -9.079 12.659 78.272 1.00 45.55 O
ATOM 6 C5' C A1935 -8.614 11.672 77.385 1.00 45.24 C
ATOM 7 C4' C A1935 -7.173 11.471 77.619 1.00 44.90 C
ATOM 8 O4' C A1935 -6.487 12.749 77.488 1.00 44.93 O
ATOM 9 C3' C A1935 -6.821 11.047 79.024 1.00 44.83 C
ATOM 10 O3' C A1935 -7.044 9.683 79.259 1.00 44.70 O
ATOM 11 C2' C A1935 -5.373 11.434 79.099 1.00 44.57 C
ATOM 12 O2' C A1935 -4.620 10.540 78.319 1.00 44.23 O
ATOM 13 C1' C A1935 -5.397 12.776 78.385 1.00 44.74 C
ATOM 14 N1 C A1935 -5.556 13.912 79.326 1.00 45.01 N
ATOM 15 C2 C A1935 -4.434 14.315 80.061 1.00 44.88 C
ATOM 16 O2 C A1935 -3.388 13.681 79.906 1.00 44.55 O
ATOM 17 N3 C A1935 -4.495 15.366 80.927 1.00 45.13 N
ATOM 18 C4 C A1935 -5.629 16.036 81.044 1.00 45.50 C
ATOM 19 N4 C A1935 -5.678 17.061 81.859 1.00 45.76 N
ATOM 20 C5 C A1935 -6.766 15.670 80.297 1.00 45.64 C
ATOM 21 C6 C A1935 -6.691 14.623 79.448 1.00 45.39 C
ATOM 22 P U A1936 -7.411 9.178 80.732 1.00 42.81 P
ATOM 23 OP1 U A1936 -7.446 7.704 80.688 1.00 42.62 O
ATOM 24 OP2 U A1936 -8.628 9.920 81.184 1.00 43.22 O
ATOM 25 O5' U A1936 -6.173 9.655 81.586 1.00 42.66 O
TER
ATOM 1 O3' C B1935 -7.044 9.683 79.259 1.00 44.70 O
ATOM 2 P U B1936 -7.411 9.178 80.732 1.00 42.81 P
ATOM 3 OP1 U B1936 -7.446 7.704 80.688 1.00 42.62 O
ATOM 4 OP2 U B1936 -8.628 9.920 81.184 1.00 43.22 O
ATOM 5 O5' U B1936 -6.173 9.655 81.586 1.00 42.66 O
ATOM 6 C5' U B1936 -4.877 9.159 81.347 1.00 42.30 C
ATOM 7 C4' U B1936 -3.918 9.737 82.327 1.00 42.25 C
ATOM 8 O4' U B1936 -3.700 11.143 82.041 1.00 42.38 O
ATOM 9 C3' U B1936 -4.366 9.711 83.788 1.00 42.46 C
ATOM 10 O3' U B1936 -4.213 8.412 84.389 1.00 42.31 O
ATOM 11 C2' U B1936 -3.470 10.790 84.383 1.00 42.48 C
ATOM 12 O2' U B1936 -2.135 10.301 84.535 1.00 42.16 O
ATOM 13 C1' U B1936 -3.491 11.838 83.250 1.00 42.54 C
ATOM 14 N1 U B1936 -4.607 12.820 83.422 1.00 42.94 N
ATOM 15 C2 U B1936 -4.446 13.995 84.175 1.00 43.16 C
ATOM 16 O2 U B1936 -3.421 14.325 84.741 1.00 43.06 O
ATOM 17 N3 U B1936 -5.532 14.809 84.276 1.00 43.54 N
ATOM 18 C4 U B1936 -6.751 14.591 83.725 1.00 43.72 C
ATOM 19 O4 U B1936 -7.609 15.432 83.910 1.00 44.07 O
ATOM 20 C5 U B1936 -6.881 13.417 82.963 1.00 43.49 C
ATOM 21 C6 U B1936 -5.837 12.602 82.844 1.00 43.12 C
ATOM 22 P G B1937 -4.815 8.059 85.852 1.00 41.87 P
ATOM 23 OP1 G B1937 -4.544 6.631 86.099 1.00 41.66 O
ATOM 24 OP2 G B1937 -6.185 8.510 85.873 1.00 42.22 O
ATOM 25 O5' G B1937 -3.946 8.958 86.833 1.00 41.91 O
TER
Atoms:
C2: (-4.434,14.315,80.061)
OP1: (-11.303,11.560,78.522)
OP2: (-10.747,13.733,79.736)
C4: (-5.629,16.036,81.044)
O5': (-9.079,12.659,78.272)
C3': (-6.821,11.047,79.024)
C1': (-5.397,12.776,78.385)
O4': (-6.487,12.749,77.488)
C5': (-8.614,11.672,77.385)
P: (-10.609,12.868,78.549)
O2: (-3.388,13.681,79.906)
C4': (-7.173,11.471,77.619)
C2': (-5.373,11.434,79.099)
O2': (-4.620,10.540,78.319)
N1: (-5.556,13.912,79.326)
N3: (-4.495,15.366,80.927)
N4: (-5.678,17.061,81.859)
C6: (-6.691,14.623,79.448)
C5: (-6.766,15.670,80.297)
O3': (-7.044,9.683,79.259)
OP1: (-11.303,11.560,78.522)
OP2: (-10.747,13.733,79.736)
C4: (-5.629,16.036,81.044)
O5': (-9.079,12.659,78.272)
C3': (-6.821,11.047,79.024)
C1': (-5.397,12.776,78.385)
O4': (-6.487,12.749,77.488)
C5': (-8.614,11.672,77.385)
P: (-10.609,12.868,78.549)
O2: (-3.388,13.681,79.906)
C4': (-7.173,11.471,77.619)
C2': (-5.373,11.434,79.099)
O2': (-4.620,10.540,78.319)
N1: (-5.556,13.912,79.326)
N3: (-4.495,15.366,80.927)
N4: (-5.678,17.061,81.859)
C6: (-6.691,14.623,79.448)
C5: (-6.766,15.670,80.297)
O3': (-7.044,9.683,79.259)
C4: (-6.751,14.591,83.725)
N3: (-5.532,14.809,84.276)
OP1: (-7.446,7.704,80.688)
OP2: (-8.628,9.920,81.184)
C2: (-4.446,13.995,84.175)
C1': (-3.491,11.838,83.250)
C3': (-4.366,9.711,83.788)
O5': (-6.173,9.655,81.586)
O4': (-3.700,11.143,82.041)
C5': (-4.877,9.159,81.347)
P: (-7.411,9.178,80.732)
C4': (-3.918,9.737,82.327)
C2': (-3.470,10.790,84.383)
O2': (-2.135,10.301,84.535)
N1: (-4.607,12.820,83.422)
O4: (-7.609,15.432,83.910)
O2: (-3.421,14.325,84.741)
C6: (-5.837,12.602,82.844)
C5: (-6.881,13.417,82.963)
O3': (-4.213,8.412,84.389)
N3: (-5.532,14.809,84.276)
OP1: (-7.446,7.704,80.688)
OP2: (-8.628,9.920,81.184)
C2: (-4.446,13.995,84.175)
C1': (-3.491,11.838,83.250)
C3': (-4.366,9.711,83.788)
O5': (-6.173,9.655,81.586)
O4': (-3.700,11.143,82.041)
C5': (-4.877,9.159,81.347)
P: (-7.411,9.178,80.732)
C4': (-3.918,9.737,82.327)
C2': (-3.470,10.790,84.383)
O2': (-2.135,10.301,84.535)
N1: (-4.607,12.820,83.422)
O4: (-7.609,15.432,83.910)
O2: (-3.421,14.325,84.741)
C6: (-5.837,12.602,82.844)
C5: (-6.881,13.417,82.963)
O3': (-4.213,8.412,84.389)
Image (generated by PyMOL):