Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0582:0583
Extra
PDB:
ATOM 1 O3' A A 581 0.558 107.006 97.380 1.00 50.00 O
ATOM 2 P C A 582 -0.549 107.951 96.708 1.00 48.21 P
ATOM 3 OP1 C A 582 -0.008 109.325 96.584 1.00 47.52 O
ATOM 4 OP2 C A 582 -1.808 107.735 97.447 1.00 50.56 O
ATOM 5 O5' C A 582 -0.720 107.339 95.248 1.00 46.97 O
ATOM 6 C5' C A 582 0.404 107.223 94.375 1.00 46.30 C
ATOM 7 C4' C A 582 0.074 106.338 93.199 1.00 47.41 C
ATOM 8 O4' C A 582 -0.254 105.002 93.659 1.00 48.50 O
ATOM 9 C3' C A 582 -1.129 106.745 92.371 1.00 46.34 C
ATOM 10 O3' C A 582 -0.815 107.783 91.458 1.00 45.00 O
ATOM 11 C2' C A 582 -1.482 105.440 91.674 1.00 47.82 C
ATOM 12 O2' C A 582 -0.630 105.143 90.589 1.00 46.10 O
ATOM 13 C1' C A 582 -1.235 104.433 92.800 1.00 50.13 C
ATOM 14 N1 C A 582 -2.459 104.172 93.587 1.00 53.24 N
ATOM 15 C2 C A 582 -3.351 103.171 93.150 1.00 54.50 C
ATOM 16 O2 C A 582 -3.055 102.483 92.155 1.00 52.75 O
ATOM 17 N3 C A 582 -4.507 102.978 93.834 1.00 55.88 N
ATOM 18 C4 C A 582 -4.778 103.718 94.914 1.00 55.06 C
ATOM 19 N4 C A 582 -5.940 103.517 95.535 1.00 55.02 N
ATOM 20 C5 C A 582 -3.871 104.707 95.400 1.00 53.94 C
ATOM 21 C6 C A 582 -2.740 104.901 94.713 1.00 53.10 C
ATOM 22 P U A 583 -1.959 108.813 91.013 1.00 44.90 P
ATOM 23 OP1 U A 583 -1.422 109.642 89.905 1.00 44.60 O
ATOM 24 OP2 U A 583 -2.483 109.482 92.227 1.00 42.15 O
ATOM 25 O5' U A 583 -3.081 107.855 90.413 1.00 43.67 O
TER
ATOM 1 O3' C B 582 -0.815 107.783 91.458 1.00 45.00 O
ATOM 2 P U B 583 -1.959 108.813 91.013 1.00 44.90 P
ATOM 3 OP1 U B 583 -1.422 109.642 89.905 1.00 44.60 O
ATOM 4 OP2 U B 583 -2.483 109.482 92.227 1.00 42.15 O
ATOM 5 O5' U B 583 -3.081 107.855 90.413 1.00 43.67 O
ATOM 6 C5' U B 583 -2.847 107.125 89.197 1.00 45.65 C
ATOM 7 C4' U B 583 -4.103 106.406 88.773 1.00 48.83 C
ATOM 8 O4' U B 583 -4.364 105.287 89.661 1.00 50.78 O
ATOM 9 C3' U B 583 -5.372 107.235 88.842 1.00 49.22 C
ATOM 10 O3' U B 583 -5.534 108.074 87.718 1.00 50.53 O
ATOM 11 C2' U B 583 -6.446 106.169 88.947 1.00 50.18 C
ATOM 12 O2' U B 583 -6.740 105.555 87.709 1.00 48.77 O
ATOM 13 C1' U B 583 -5.763 105.170 89.883 1.00 52.01 C
ATOM 14 N1 U B 583 -6.034 105.495 91.294 1.00 54.60 N
ATOM 15 C2 U B 583 -7.140 104.922 91.893 1.00 54.71 C
ATOM 16 O2 U B 583 -7.890 104.158 91.314 1.00 54.68 O
ATOM 17 N3 U B 583 -7.340 105.284 93.199 1.00 55.79 N
ATOM 18 C4 U B 583 -6.569 106.138 93.951 1.00 56.77 C
ATOM 19 O4 U B 583 -6.867 106.345 95.127 1.00 59.23 O
ATOM 20 C5 U B 583 -5.445 106.685 93.266 1.00 56.65 C
ATOM 21 C6 U B 583 -5.219 106.353 91.998 1.00 55.74 C
ATOM 22 P C B 584 -6.451 109.379 87.839 1.00 51.35 P
ATOM 23 OP1 C B 584 -6.313 110.130 86.566 1.00 52.13 O
ATOM 24 OP2 C B 584 -6.173 110.064 89.128 1.00 47.75 O
ATOM 25 O5' C B 584 -7.922 108.776 87.899 1.00 54.70 O
TER
ATOM 2 P C A 582 -0.549 107.951 96.708 1.00 48.21 P
ATOM 3 OP1 C A 582 -0.008 109.325 96.584 1.00 47.52 O
ATOM 4 OP2 C A 582 -1.808 107.735 97.447 1.00 50.56 O
ATOM 5 O5' C A 582 -0.720 107.339 95.248 1.00 46.97 O
ATOM 6 C5' C A 582 0.404 107.223 94.375 1.00 46.30 C
ATOM 7 C4' C A 582 0.074 106.338 93.199 1.00 47.41 C
ATOM 8 O4' C A 582 -0.254 105.002 93.659 1.00 48.50 O
ATOM 9 C3' C A 582 -1.129 106.745 92.371 1.00 46.34 C
ATOM 10 O3' C A 582 -0.815 107.783 91.458 1.00 45.00 O
ATOM 11 C2' C A 582 -1.482 105.440 91.674 1.00 47.82 C
ATOM 12 O2' C A 582 -0.630 105.143 90.589 1.00 46.10 O
ATOM 13 C1' C A 582 -1.235 104.433 92.800 1.00 50.13 C
ATOM 14 N1 C A 582 -2.459 104.172 93.587 1.00 53.24 N
ATOM 15 C2 C A 582 -3.351 103.171 93.150 1.00 54.50 C
ATOM 16 O2 C A 582 -3.055 102.483 92.155 1.00 52.75 O
ATOM 17 N3 C A 582 -4.507 102.978 93.834 1.00 55.88 N
ATOM 18 C4 C A 582 -4.778 103.718 94.914 1.00 55.06 C
ATOM 19 N4 C A 582 -5.940 103.517 95.535 1.00 55.02 N
ATOM 20 C5 C A 582 -3.871 104.707 95.400 1.00 53.94 C
ATOM 21 C6 C A 582 -2.740 104.901 94.713 1.00 53.10 C
ATOM 22 P U A 583 -1.959 108.813 91.013 1.00 44.90 P
ATOM 23 OP1 U A 583 -1.422 109.642 89.905 1.00 44.60 O
ATOM 24 OP2 U A 583 -2.483 109.482 92.227 1.00 42.15 O
ATOM 25 O5' U A 583 -3.081 107.855 90.413 1.00 43.67 O
TER
ATOM 1 O3' C B 582 -0.815 107.783 91.458 1.00 45.00 O
ATOM 2 P U B 583 -1.959 108.813 91.013 1.00 44.90 P
ATOM 3 OP1 U B 583 -1.422 109.642 89.905 1.00 44.60 O
ATOM 4 OP2 U B 583 -2.483 109.482 92.227 1.00 42.15 O
ATOM 5 O5' U B 583 -3.081 107.855 90.413 1.00 43.67 O
ATOM 6 C5' U B 583 -2.847 107.125 89.197 1.00 45.65 C
ATOM 7 C4' U B 583 -4.103 106.406 88.773 1.00 48.83 C
ATOM 8 O4' U B 583 -4.364 105.287 89.661 1.00 50.78 O
ATOM 9 C3' U B 583 -5.372 107.235 88.842 1.00 49.22 C
ATOM 10 O3' U B 583 -5.534 108.074 87.718 1.00 50.53 O
ATOM 11 C2' U B 583 -6.446 106.169 88.947 1.00 50.18 C
ATOM 12 O2' U B 583 -6.740 105.555 87.709 1.00 48.77 O
ATOM 13 C1' U B 583 -5.763 105.170 89.883 1.00 52.01 C
ATOM 14 N1 U B 583 -6.034 105.495 91.294 1.00 54.60 N
ATOM 15 C2 U B 583 -7.140 104.922 91.893 1.00 54.71 C
ATOM 16 O2 U B 583 -7.890 104.158 91.314 1.00 54.68 O
ATOM 17 N3 U B 583 -7.340 105.284 93.199 1.00 55.79 N
ATOM 18 C4 U B 583 -6.569 106.138 93.951 1.00 56.77 C
ATOM 19 O4 U B 583 -6.867 106.345 95.127 1.00 59.23 O
ATOM 20 C5 U B 583 -5.445 106.685 93.266 1.00 56.65 C
ATOM 21 C6 U B 583 -5.219 106.353 91.998 1.00 55.74 C
ATOM 22 P C B 584 -6.451 109.379 87.839 1.00 51.35 P
ATOM 23 OP1 C B 584 -6.313 110.130 86.566 1.00 52.13 O
ATOM 24 OP2 C B 584 -6.173 110.064 89.128 1.00 47.75 O
ATOM 25 O5' C B 584 -7.922 108.776 87.899 1.00 54.70 O
TER
Atoms:
C2: (-3.351,103.171,93.150)
OP1: (-0.008,109.325,96.584)
OP2: (-1.808,107.735,97.447)
C4: (-4.778,103.718,94.914)
O5': (-0.720,107.339,95.248)
C3': (-1.129,106.745,92.371)
C1': (-1.235,104.433,92.800)
O4': (-0.254,105.002,93.659)
C5': (0.404,107.223,94.375)
P: (-0.549,107.951,96.708)
O2: (-3.055,102.483,92.155)
C4': (0.074,106.338,93.199)
C2': (-1.482,105.440,91.674)
O2': (-0.630,105.143,90.589)
N1: (-2.459,104.172,93.587)
N3: (-4.507,102.978,93.834)
N4: (-5.940,103.517,95.535)
C6: (-2.740,104.901,94.713)
C5: (-3.871,104.707,95.400)
O3': (-0.815,107.783,91.458)
OP1: (-0.008,109.325,96.584)
OP2: (-1.808,107.735,97.447)
C4: (-4.778,103.718,94.914)
O5': (-0.720,107.339,95.248)
C3': (-1.129,106.745,92.371)
C1': (-1.235,104.433,92.800)
O4': (-0.254,105.002,93.659)
C5': (0.404,107.223,94.375)
P: (-0.549,107.951,96.708)
O2: (-3.055,102.483,92.155)
C4': (0.074,106.338,93.199)
C2': (-1.482,105.440,91.674)
O2': (-0.630,105.143,90.589)
N1: (-2.459,104.172,93.587)
N3: (-4.507,102.978,93.834)
N4: (-5.940,103.517,95.535)
C6: (-2.740,104.901,94.713)
C5: (-3.871,104.707,95.400)
O3': (-0.815,107.783,91.458)
C4: (-6.569,106.138,93.951)
N3: (-7.340,105.284,93.199)
OP1: (-1.422,109.642,89.905)
OP2: (-2.483,109.482,92.227)
C2: (-7.140,104.922,91.893)
C1': (-5.763,105.170,89.883)
C3': (-5.372,107.235,88.842)
O5': (-3.081,107.855,90.413)
O4': (-4.364,105.287,89.661)
C5': (-2.847,107.125,89.197)
P: (-1.959,108.813,91.013)
C4': (-4.103,106.406,88.773)
C2': (-6.446,106.169,88.947)
O2': (-6.740,105.555,87.709)
N1: (-6.034,105.495,91.294)
O4: (-6.867,106.345,95.127)
O2: (-7.890,104.158,91.314)
C6: (-5.219,106.353,91.998)
C5: (-5.445,106.685,93.266)
O3': (-5.534,108.074,87.718)
N3: (-7.340,105.284,93.199)
OP1: (-1.422,109.642,89.905)
OP2: (-2.483,109.482,92.227)
C2: (-7.140,104.922,91.893)
C1': (-5.763,105.170,89.883)
C3': (-5.372,107.235,88.842)
O5': (-3.081,107.855,90.413)
O4': (-4.364,105.287,89.661)
C5': (-2.847,107.125,89.197)
P: (-1.959,108.813,91.013)
C4': (-4.103,106.406,88.773)
C2': (-6.446,106.169,88.947)
O2': (-6.740,105.555,87.709)
N1: (-6.034,105.495,91.294)
O4: (-6.867,106.345,95.127)
O2: (-7.890,104.158,91.314)
C6: (-5.219,106.353,91.998)
C5: (-5.445,106.685,93.266)
O3': (-5.534,108.074,87.718)
Image (generated by PyMOL):