Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11272:11273
Extra
PDB:
ATOM 1 O3' C A1271 70.015 0.779 16.457 1.00 38.06 O
ATOM 2 P C A1272 70.617 0.298 17.869 1.00 36.42 P
ATOM 3 OP1 C A1272 71.712 1.198 18.182 1.00 36.47 O
ATOM 4 OP2 C A1272 70.881 -1.145 17.788 1.00 36.43 O
ATOM 5 O5' C A1272 69.447 0.564 18.874 1.00 36.05 O
ATOM 6 C5' C A1272 69.147 1.882 19.253 1.00 35.98 C
ATOM 7 C4' C A1272 68.093 1.920 20.287 1.00 35.62 C
ATOM 8 O4' C A1272 66.882 1.375 19.765 1.00 35.64 O
ATOM 9 C3' C A1272 68.344 1.089 21.496 1.00 35.29 C
ATOM 10 O3' C A1272 69.308 1.693 22.348 1.00 35.18 O
ATOM 11 C2' C A1272 66.939 1.006 22.089 1.00 35.03 C
ATOM 12 O2' C A1272 66.617 2.223 22.719 1.00 34.90 O
ATOM 13 C1' C A1272 66.091 0.928 20.831 1.00 35.29 C
ATOM 14 N1 C A1272 65.608 -0.411 20.522 1.00 35.29 N
ATOM 15 C2 C A1272 64.486 -0.903 21.165 1.00 35.03 C
ATOM 16 O2 C A1272 63.978 -0.230 22.069 1.00 34.79 O
ATOM 17 N3 C A1272 64.028 -2.116 20.797 1.00 35.07 N
ATOM 18 C4 C A1272 64.606 -2.777 19.809 1.00 35.36 C
ATOM 19 N4 C A1272 64.149 -3.957 19.433 1.00 35.43 N
ATOM 20 C5 C A1272 65.705 -2.263 19.140 1.00 35.63 C
ATOM 21 C6 C A1272 66.170 -1.083 19.513 1.00 35.58 C
ATOM 22 P U A1273 70.073 0.849 23.458 1.00 39.18 P
ATOM 23 OP1 U A1273 70.925 1.762 24.156 1.00 39.13 O
ATOM 24 OP2 U A1273 70.673 -0.315 22.774 1.00 39.37 O
ATOM 25 O5' U A1273 68.901 0.373 24.399 1.00 38.84 O
TER
ATOM 1 O3' C B1272 69.308 1.693 22.348 1.00 35.18 O
ATOM 2 P U B1273 70.073 0.849 23.458 1.00 39.18 P
ATOM 3 OP1 U B1273 70.925 1.762 24.156 1.00 39.13 O
ATOM 4 OP2 U B1273 70.673 -0.315 22.774 1.00 39.37 O
ATOM 5 O5' U B1273 68.901 0.373 24.399 1.00 38.84 O
ATOM 6 C5' U B1273 68.571 1.015 25.615 1.00 38.55 C
ATOM 7 C4' U B1273 67.855 0.030 26.482 1.00 38.26 C
ATOM 8 O4' U B1273 66.781 -0.496 25.648 1.00 38.35 O
ATOM 9 C3' U B1273 68.733 -1.184 26.851 1.00 38.22 C
ATOM 10 O3' U B1273 69.157 -1.300 28.260 1.00 37.94 O
ATOM 11 C2' U B1273 67.974 -2.406 26.382 1.00 38.23 C
ATOM 12 O2' U B1273 67.699 -3.350 27.368 1.00 37.97 O
ATOM 13 C1' U B1273 66.694 -1.897 25.749 1.00 38.28 C
ATOM 14 N1 U B1273 66.561 -2.527 24.438 1.00 38.57 N
ATOM 15 C2 U B1273 65.755 -3.667 24.328 1.00 38.52 C
ATOM 16 O2 U B1273 64.947 -3.969 25.175 1.00 38.26 O
ATOM 17 N3 U B1273 65.787 -4.426 23.185 1.00 38.80 N
ATOM 18 C4 U B1273 66.655 -4.202 22.158 1.00 39.12 C
ATOM 19 O4 U B1273 66.653 -4.925 21.154 1.00 39.38 O
ATOM 20 C5 U B1273 67.532 -3.082 22.391 1.00 39.14 C
ATOM 21 C6 U B1273 67.514 -2.347 23.511 1.00 38.87 C
ATOM 22 P A B1274 68.136 -1.198 29.477 1.00 38.75 P
ATOM 23 OP1 A B1274 66.786 -1.211 28.906 1.00 38.75 O
ATOM 24 OP2 A B1274 68.573 -0.051 30.318 1.00 38.65 O
ATOM 25 O5' A B1274 68.392 -2.543 30.267 1.00 38.58 O
TER
ATOM 2 P C A1272 70.617 0.298 17.869 1.00 36.42 P
ATOM 3 OP1 C A1272 71.712 1.198 18.182 1.00 36.47 O
ATOM 4 OP2 C A1272 70.881 -1.145 17.788 1.00 36.43 O
ATOM 5 O5' C A1272 69.447 0.564 18.874 1.00 36.05 O
ATOM 6 C5' C A1272 69.147 1.882 19.253 1.00 35.98 C
ATOM 7 C4' C A1272 68.093 1.920 20.287 1.00 35.62 C
ATOM 8 O4' C A1272 66.882 1.375 19.765 1.00 35.64 O
ATOM 9 C3' C A1272 68.344 1.089 21.496 1.00 35.29 C
ATOM 10 O3' C A1272 69.308 1.693 22.348 1.00 35.18 O
ATOM 11 C2' C A1272 66.939 1.006 22.089 1.00 35.03 C
ATOM 12 O2' C A1272 66.617 2.223 22.719 1.00 34.90 O
ATOM 13 C1' C A1272 66.091 0.928 20.831 1.00 35.29 C
ATOM 14 N1 C A1272 65.608 -0.411 20.522 1.00 35.29 N
ATOM 15 C2 C A1272 64.486 -0.903 21.165 1.00 35.03 C
ATOM 16 O2 C A1272 63.978 -0.230 22.069 1.00 34.79 O
ATOM 17 N3 C A1272 64.028 -2.116 20.797 1.00 35.07 N
ATOM 18 C4 C A1272 64.606 -2.777 19.809 1.00 35.36 C
ATOM 19 N4 C A1272 64.149 -3.957 19.433 1.00 35.43 N
ATOM 20 C5 C A1272 65.705 -2.263 19.140 1.00 35.63 C
ATOM 21 C6 C A1272 66.170 -1.083 19.513 1.00 35.58 C
ATOM 22 P U A1273 70.073 0.849 23.458 1.00 39.18 P
ATOM 23 OP1 U A1273 70.925 1.762 24.156 1.00 39.13 O
ATOM 24 OP2 U A1273 70.673 -0.315 22.774 1.00 39.37 O
ATOM 25 O5' U A1273 68.901 0.373 24.399 1.00 38.84 O
TER
ATOM 1 O3' C B1272 69.308 1.693 22.348 1.00 35.18 O
ATOM 2 P U B1273 70.073 0.849 23.458 1.00 39.18 P
ATOM 3 OP1 U B1273 70.925 1.762 24.156 1.00 39.13 O
ATOM 4 OP2 U B1273 70.673 -0.315 22.774 1.00 39.37 O
ATOM 5 O5' U B1273 68.901 0.373 24.399 1.00 38.84 O
ATOM 6 C5' U B1273 68.571 1.015 25.615 1.00 38.55 C
ATOM 7 C4' U B1273 67.855 0.030 26.482 1.00 38.26 C
ATOM 8 O4' U B1273 66.781 -0.496 25.648 1.00 38.35 O
ATOM 9 C3' U B1273 68.733 -1.184 26.851 1.00 38.22 C
ATOM 10 O3' U B1273 69.157 -1.300 28.260 1.00 37.94 O
ATOM 11 C2' U B1273 67.974 -2.406 26.382 1.00 38.23 C
ATOM 12 O2' U B1273 67.699 -3.350 27.368 1.00 37.97 O
ATOM 13 C1' U B1273 66.694 -1.897 25.749 1.00 38.28 C
ATOM 14 N1 U B1273 66.561 -2.527 24.438 1.00 38.57 N
ATOM 15 C2 U B1273 65.755 -3.667 24.328 1.00 38.52 C
ATOM 16 O2 U B1273 64.947 -3.969 25.175 1.00 38.26 O
ATOM 17 N3 U B1273 65.787 -4.426 23.185 1.00 38.80 N
ATOM 18 C4 U B1273 66.655 -4.202 22.158 1.00 39.12 C
ATOM 19 O4 U B1273 66.653 -4.925 21.154 1.00 39.38 O
ATOM 20 C5 U B1273 67.532 -3.082 22.391 1.00 39.14 C
ATOM 21 C6 U B1273 67.514 -2.347 23.511 1.00 38.87 C
ATOM 22 P A B1274 68.136 -1.198 29.477 1.00 38.75 P
ATOM 23 OP1 A B1274 66.786 -1.211 28.906 1.00 38.75 O
ATOM 24 OP2 A B1274 68.573 -0.051 30.318 1.00 38.65 O
ATOM 25 O5' A B1274 68.392 -2.543 30.267 1.00 38.58 O
TER
Atoms:
C2: (64.486,-0.903,21.165)
OP1: (71.712,1.198,18.182)
OP2: (70.881,-1.145,17.788)
C4: (64.606,-2.777,19.809)
O5': (69.447,0.564,18.874)
C3': (68.344,1.089,21.496)
C1': (66.091,0.928,20.831)
O4': (66.882,1.375,19.765)
C5': (69.147,1.882,19.253)
P: (70.617,0.298,17.869)
O2: (63.978,-0.230,22.069)
C4': (68.093,1.920,20.287)
C2': (66.939,1.006,22.089)
O2': (66.617,2.223,22.719)
N1: (65.608,-0.411,20.522)
N3: (64.028,-2.116,20.797)
N4: (64.149,-3.957,19.433)
C6: (66.170,-1.083,19.513)
C5: (65.705,-2.263,19.140)
O3': (69.308,1.693,22.348)
OP1: (71.712,1.198,18.182)
OP2: (70.881,-1.145,17.788)
C4: (64.606,-2.777,19.809)
O5': (69.447,0.564,18.874)
C3': (68.344,1.089,21.496)
C1': (66.091,0.928,20.831)
O4': (66.882,1.375,19.765)
C5': (69.147,1.882,19.253)
P: (70.617,0.298,17.869)
O2: (63.978,-0.230,22.069)
C4': (68.093,1.920,20.287)
C2': (66.939,1.006,22.089)
O2': (66.617,2.223,22.719)
N1: (65.608,-0.411,20.522)
N3: (64.028,-2.116,20.797)
N4: (64.149,-3.957,19.433)
C6: (66.170,-1.083,19.513)
C5: (65.705,-2.263,19.140)
O3': (69.308,1.693,22.348)
C4: (66.655,-4.202,22.158)
N3: (65.787,-4.426,23.185)
OP1: (70.925,1.762,24.156)
OP2: (70.673,-0.315,22.774)
C2: (65.755,-3.667,24.328)
C1': (66.694,-1.897,25.749)
C3': (68.733,-1.184,26.851)
O5': (68.901,0.373,24.399)
O4': (66.781,-0.496,25.648)
C5': (68.571,1.015,25.615)
P: (70.073,0.849,23.458)
C4': (67.855,0.030,26.482)
C2': (67.974,-2.406,26.382)
O2': (67.699,-3.350,27.368)
N1: (66.561,-2.527,24.438)
O4: (66.653,-4.925,21.154)
O2: (64.947,-3.969,25.175)
C6: (67.514,-2.347,23.511)
C5: (67.532,-3.082,22.391)
O3': (69.157,-1.300,28.260)
N3: (65.787,-4.426,23.185)
OP1: (70.925,1.762,24.156)
OP2: (70.673,-0.315,22.774)
C2: (65.755,-3.667,24.328)
C1': (66.694,-1.897,25.749)
C3': (68.733,-1.184,26.851)
O5': (68.901,0.373,24.399)
O4': (66.781,-0.496,25.648)
C5': (68.571,1.015,25.615)
P: (70.073,0.849,23.458)
C4': (67.855,0.030,26.482)
C2': (67.974,-2.406,26.382)
O2': (67.699,-3.350,27.368)
N1: (66.561,-2.527,24.438)
O4: (66.653,-4.925,21.154)
O2: (64.947,-3.969,25.175)
C6: (67.514,-2.347,23.511)
C5: (67.532,-3.082,22.391)
O3': (69.157,-1.300,28.260)
Image (generated by PyMOL):