ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1345:1350

Extra

PDB:
ATOM 1 O3' G A 344 63.538 2.171 96.825 1.00 40.15 O
ATOM 2 P A A 345 65.125 2.004 96.756 1.00 35.80 P
ATOM 3 OP1 A A 345 65.523 2.696 95.627 1.00 35.66 O
ATOM 4 OP2 A A 345 65.441 0.581 96.838 1.00 35.77 O
ATOM 5 O5' A A 345 65.626 2.772 98.043 1.00 36.21 O
ATOM 6 C5' A A 345 65.413 4.171 98.110 1.00 36.31 C
ATOM 7 C4' A A 345 65.646 4.726 99.474 1.00 36.70 C
ATOM 8 O4' A A 345 64.643 4.234 100.389 1.00 36.75 O
ATOM 9 C3' A A 345 66.972 4.375 100.123 1.00 36.99 C
ATOM 10 O3' A A 345 68.037 5.175 99.624 1.00 37.09 O
ATOM 11 C2' A A 345 66.646 4.605 101.602 1.00 37.34 C
ATOM 12 O2' A A 345 66.589 5.986 101.901 1.00 37.53 O
ATOM 13 C1' A A 345 65.224 4.071 101.673 1.00 37.13 C
ATOM 14 N9 A A 345 65.187 2.643 102.013 1.00 37.09 N
ATOM 15 C8 A A 345 65.145 1.593 101.131 1.00 36.79 C
ATOM 16 N7 A A 345 65.099 0.442 101.725 1.00 36.86 N
ATOM 17 C5 A A 345 65.087 0.767 103.068 1.00 37.22 C
ATOM 18 C6 A A 345 65.041 -0.006 104.207 1.00 37.46 C
ATOM 19 N6 A A 345 65.015 -1.316 104.191 1.00 37.38 N
ATOM 20 N1 A A 345 65.039 0.621 105.378 1.00 37.81 N
ATOM 21 C2 A A 345 65.091 1.955 105.402 1.00 37.92 C
ATOM 22 N3 A A 345 65.142 2.801 104.409 1.00 37.72 N
ATOM 23 C4 A A 345 65.141 2.122 103.266 1.00 37.37 C
ATOM 24 P A A 346 69.497 4.555 99.298 1.00 43.66 P
ATOM 25 OP1 A A 346 70.022 5.236 98.089 1.00 43.51 O
ATOM 26 OP2 A A 346 69.387 3.094 99.284 1.00 43.52 O
ATOM 27 O5' A A 346 70.316 5.001 100.560 1.00 44.12 O
TER

ATOM 1 O3' A B 349 63.882 5.827 106.815 1.00 44.21 O
ATOM 2 P G B 350 64.059 5.070 108.203 1.00 39.63 P
ATOM 3 OP1 G B 350 63.844 6.057 109.249 1.00 40.00 O
ATOM 4 OP2 G B 350 65.335 4.340 108.155 1.00 39.71 O
ATOM 5 O5' G B 350 62.856 4.048 108.186 1.00 39.38 O
ATOM 6 C5' G B 350 61.573 4.422 108.686 1.00 39.41 C
ATOM 7 C4' G B 350 60.773 5.220 107.683 1.00 39.11 C
ATOM 8 O4' G B 350 60.564 4.439 106.462 1.00 38.67 O
ATOM 9 C3' G B 350 59.373 5.641 108.139 1.00 39.13 C
ATOM 10 O3' G B 350 59.086 6.910 107.545 1.00 39.06 O
ATOM 11 C2' G B 350 58.504 4.575 107.492 1.00 38.76 C
ATOM 12 O2' G B 350 57.162 4.917 107.379 1.00 38.63 O
ATOM 13 C1' G B 350 59.186 4.478 106.139 1.00 38.44 C
ATOM 14 N9 G B 350 58.841 3.293 105.313 1.00 38.08 N
ATOM 15 C8 G B 350 58.653 1.974 105.688 1.00 38.06 C
ATOM 16 N7 G B 350 58.403 1.179 104.701 1.00 37.71 N
ATOM 17 C5 G B 350 58.386 2.019 103.591 1.00 37.48 C
ATOM 18 C6 G B 350 58.133 1.722 102.229 1.00 37.09 C
ATOM 19 O6 G B 350 57.842 0.629 101.695 1.00 36.86 O
ATOM 20 N1 G B 350 58.245 2.846 101.447 1.00 37.00 N
ATOM 21 C2 G B 350 58.488 4.102 101.912 1.00 37.24 C
ATOM 22 N2 G B 350 58.532 5.083 100.968 1.00 37.10 N
ATOM 23 N3 G B 350 58.682 4.369 103.187 1.00 37.60 N
ATOM 24 C4 G B 350 58.648 3.297 103.949 1.00 37.70 C
ATOM 25 P U B 351 57.891 7.819 108.076 1.00 36.70 P
ATOM 26 OP1 U B 351 57.748 7.530 109.505 1.00 37.07 O
ATOM 27 OP2 U B 351 56.709 7.600 107.159 1.00 36.31 O
ATOM 28 O5' U B 351 58.432 9.279 107.875 1.00 36.87 O
TER

Atoms:
OP1: (65.523,2.696,95.627)
OP2: (65.441,0.581,96.838)
C3': (66.972,4.375,100.123)
C1': (65.224,4.071,101.673)
C5': (65.413,4.171,98.110)
O4': (64.643,4.234,100.389)
C8: (65.145,1.593,101.131)
O2': (66.589,5.986,101.901)
C6: (65.041,-0.006,104.207)
C5: (65.087,0.767,103.068)
C4: (65.141,2.122,103.266)
P: (65.125,2.004,96.756)
C4': (65.646,4.726,99.474)
C2': (66.646,4.605,101.602)
C2: (65.091,1.955,105.402)
N1: (65.039,0.621,105.378)
N3: (65.142,2.801,104.409)
N6: (65.015,-1.316,104.191)
N7: (65.099,0.442,101.725)
N9: (65.187,2.643,102.013)
O5': (65.626,2.772,98.043)
O3': (68.037,5.175,99.624)
OP1: (63.844,6.057,109.249)
OP2: (65.335,4.340,108.155)
C3': (59.373,5.641,108.139)
C1': (59.186,4.478,106.139)
C5': (61.573,4.422,108.686)
O6: (57.842,0.629,101.695)
O4': (60.564,4.439,106.462)
C8: (58.653,1.974,105.688)
C2: (58.488,4.102,101.912)
C6: (58.133,1.722,102.229)
C5: (58.386,2.019,103.591)
C4: (58.648,3.297,103.949)
P: (64.059,5.070,108.203)
C4': (60.773,5.220,107.683)
C2': (58.504,4.575,107.492)
O2': (57.162,4.917,107.379)
N1: (58.245,2.846,101.447)
N2: (58.532,5.083,100.968)
N3: (58.682,4.369,103.187)
N7: (58.403,1.179,104.701)
N9: (58.841,3.293,105.313)
O5': (62.856,4.048,108.186)
O3': (59.086,6.910,107.545)
Image (generated by PyMOL):
PyMOL image
show in jmol