ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A229:A367

Extra

PDB:
ATOM 1 O3' C A 228 84.142 113.793 6.539 1.00 56.91 O
ATOM 2 P A A 229 85.492 113.486 5.723 1.00 55.93 P
ATOM 3 OP1 A A 229 86.247 114.772 5.638 1.00 53.79 O
ATOM 4 OP2 A A 229 85.104 112.783 4.478 1.00 57.21 O
ATOM 5 O5' A A 229 86.294 112.454 6.643 1.00 53.66 O
ATOM 6 C5' A A 229 86.870 112.874 7.891 1.00 53.87 C
ATOM 7 C4' A A 229 87.622 111.743 8.558 1.00 54.71 C
ATOM 8 O4' A A 229 86.728 110.764 9.138 1.00 54.87 O
ATOM 9 C3' A A 229 88.494 110.887 7.673 1.00 55.04 C
ATOM 10 O3' A A 229 89.657 111.591 7.299 1.00 55.49 O
ATOM 11 C2' A A 229 88.775 109.685 8.571 1.00 55.22 C
ATOM 12 O2' A A 229 89.769 109.918 9.548 1.00 55.14 O
ATOM 13 C1' A A 229 87.429 109.533 9.283 1.00 55.41 C
ATOM 14 N9 A A 229 86.614 108.453 8.733 1.00 55.42 N
ATOM 15 C8 A A 229 85.598 108.519 7.812 1.00 55.50 C
ATOM 16 N7 A A 229 85.077 107.353 7.517 1.00 55.16 N
ATOM 17 C5 A A 229 85.795 106.462 8.301 1.00 55.40 C
ATOM 18 C6 A A 229 85.727 105.065 8.451 1.00 55.10 C
ATOM 19 N6 A A 229 84.879 104.285 7.784 1.00 54.61 N
ATOM 20 N1 A A 229 86.578 104.488 9.318 1.00 55.93 N
ATOM 21 C2 A A 229 87.448 105.265 9.977 1.00 56.94 C
ATOM 22 N3 A A 229 87.614 106.583 9.919 1.00 55.97 N
ATOM 23 C4 A A 229 86.743 107.127 9.055 1.00 55.44 C
ATOM 24 P A A 230 90.077 111.606 5.761 1.00 54.95 P
ATOM 25 OP1 A A 230 91.331 112.382 5.641 1.00 54.54 O
ATOM 26 OP2 A A 230 88.884 112.006 4.967 1.00 53.86 O
ATOM 27 O5' A A 230 90.414 110.072 5.487 1.00 55.07 O
TER

ATOM 1 O3' A B 366 89.016 102.374 11.159 1.00 67.76 O
ATOM 2 P G B 367 89.392 101.594 12.519 1.00 67.12 P
ATOM 3 OP1 G B 367 90.629 100.795 12.278 1.00 66.63 O
ATOM 4 OP2 G B 367 88.153 100.906 12.996 1.00 68.24 O
ATOM 5 O5' G B 367 89.750 102.757 13.548 1.00 65.55 O
ATOM 6 C5' G B 367 90.791 103.712 13.245 1.00 61.27 C
ATOM 7 C4' G B 367 90.722 104.898 14.186 1.00 58.42 C
ATOM 8 O4' G B 367 89.634 105.784 13.823 1.00 57.56 O
ATOM 9 C3' G B 367 90.515 104.592 15.661 1.00 57.71 C
ATOM 10 O3' G B 367 91.180 105.564 16.464 1.00 56.67 O
ATOM 11 C2' G B 367 88.994 104.610 15.784 1.00 56.40 C
ATOM 12 O2' G B 367 88.477 104.819 17.084 1.00 56.29 O
ATOM 13 C1' G B 367 88.600 105.704 14.789 1.00 55.37 C
ATOM 14 N9 G B 367 87.381 105.334 14.081 1.00 54.60 N
ATOM 15 C8 G B 367 86.849 104.070 13.973 1.00 55.32 C
ATOM 16 N7 G B 367 85.757 104.030 13.266 1.00 55.30 N
ATOM 17 C5 G B 367 85.550 105.348 12.890 1.00 55.10 C
ATOM 18 C6 G B 367 84.529 105.914 12.107 1.00 55.64 C
ATOM 19 O6 G B 367 83.555 105.348 11.590 1.00 56.03 O
ATOM 20 N1 G B 367 84.712 107.284 11.944 1.00 55.67 N
ATOM 21 C2 G B 367 85.744 108.014 12.477 1.00 55.50 C
ATOM 22 N2 G B 367 85.741 109.326 12.200 1.00 54.69 N
ATOM 23 N3 G B 367 86.705 107.493 13.223 1.00 55.07 N
ATOM 24 C4 G B 367 86.547 106.165 13.385 1.00 54.62 C
ATOM 25 P A B 368 92.709 105.301 16.899 1.00 58.20 P
ATOM 26 OP1 A B 368 93.301 106.568 17.408 1.00 57.42 O
ATOM 27 OP2 A B 368 93.344 104.608 15.745 1.00 58.93 O
ATOM 28 O5' A B 368 92.645 104.226 18.085 1.00 56.98 O
TER

Atoms:
OP1: (86.247,114.772,5.638)
OP2: (85.104,112.783,4.478)
C3': (88.494,110.887,7.673)
C1': (87.429,109.533,9.283)
C5': (86.870,112.874,7.891)
O4': (86.728,110.764,9.138)
C8: (85.598,108.519,7.812)
O2': (89.769,109.918,9.548)
C6: (85.727,105.065,8.451)
C5: (85.795,106.462,8.301)
C4: (86.743,107.127,9.055)
P: (85.492,113.486,5.723)
C4': (87.622,111.743,8.558)
C2': (88.775,109.685,8.571)
C2: (87.448,105.265,9.977)
N1: (86.578,104.488,9.318)
N3: (87.614,106.583,9.919)
N6: (84.879,104.285,7.784)
N7: (85.077,107.353,7.517)
N9: (86.614,108.453,8.733)
O5': (86.294,112.454,6.643)
O3': (89.657,111.591,7.299)
OP1: (90.629,100.795,12.278)
OP2: (88.153,100.906,12.996)
C3': (90.515,104.592,15.661)
C1': (88.600,105.704,14.789)
C5': (90.791,103.712,13.245)
O6: (83.555,105.348,11.590)
O4': (89.634,105.784,13.823)
C8: (86.849,104.070,13.973)
C2: (85.744,108.014,12.477)
C6: (84.529,105.914,12.107)
C5: (85.550,105.348,12.890)
C4: (86.547,106.165,13.385)
P: (89.392,101.594,12.519)
C4': (90.722,104.898,14.186)
C2': (88.994,104.610,15.784)
O2': (88.477,104.819,17.084)
N1: (84.712,107.284,11.944)
N2: (85.741,109.326,12.200)
N3: (86.705,107.493,13.223)
N7: (85.757,104.030,13.266)
N9: (87.381,105.334,14.081)
O5': (89.750,102.757,13.548)
O3': (91.180,105.564,16.464)
Image (generated by PyMOL):
PyMOL image
show in jmol