ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0618:02018

Extra

PDB:
ATOM 1 O3' A A 617 41.078 117.423 95.034 1.00 36.09 O
ATOM 2 P A A 618 42.397 116.913 94.283 1.00 36.55 P
ATOM 3 OP1 A A 618 42.522 117.771 93.082 1.00 36.77 O
ATOM 4 OP2 A A 618 42.305 115.449 94.124 1.00 39.09 O
ATOM 5 O5' A A 618 43.600 117.191 95.294 1.00 37.17 O
ATOM 6 C5' A A 618 43.867 118.514 95.783 1.00 38.48 C
ATOM 7 C4' A A 618 44.637 118.466 97.093 1.00 38.95 C
ATOM 8 O4' A A 618 44.022 117.503 97.995 1.00 39.82 O
ATOM 9 C3' A A 618 46.122 118.122 97.059 1.00 35.95 C
ATOM 10 O3' A A 618 46.770 118.866 98.084 1.00 35.10 O
ATOM 11 C2' A A 618 46.132 116.649 97.450 1.00 37.79 C
ATOM 12 O2' A A 618 47.328 116.243 98.081 1.00 37.31 O
ATOM 13 C1' A A 618 44.997 116.598 98.466 1.00 38.29 C
ATOM 14 N9 A A 618 44.379 115.277 98.568 1.00 38.77 N
ATOM 15 C8 A A 618 43.401 114.748 97.767 1.00 38.20 C
ATOM 16 N7 A A 618 43.044 113.535 98.103 1.00 37.86 N
ATOM 17 C5 A A 618 43.841 113.243 99.195 1.00 36.48 C
ATOM 18 C6 A A 618 43.940 112.111 100.004 1.00 36.16 C
ATOM 19 N6 A A 618 43.204 111.019 99.831 1.00 35.02 N
ATOM 20 N1 A A 618 44.831 112.136 101.015 1.00 37.80 N
ATOM 21 C2 A A 618 45.565 113.241 101.190 1.00 38.42 C
ATOM 22 N3 A A 618 45.561 114.374 100.493 1.00 38.19 N
ATOM 23 C4 A A 618 44.667 114.308 99.496 1.00 37.77 C
ATOM 24 P A A 619 46.829 120.471 97.990 1.00 37.83 P
ATOM 25 OP1 A A 619 45.771 121.042 98.866 1.00 35.85 O
ATOM 26 OP2 A A 619 46.860 120.831 96.545 1.00 36.63 O
ATOM 27 O5' A A 619 48.220 120.859 98.660 1.00 35.05 O
TER

ATOM 1 O3' C B2017 48.749 111.280 103.081 1.00 42.26 O
ATOM 2 P G B2018 47.969 111.602 104.450 1.00 44.68 P
ATOM 3 OP1 G B2018 46.840 110.648 104.677 1.00 43.88 O
ATOM 4 OP2 G B2018 47.718 113.066 104.481 1.00 42.48 O
ATOM 5 O5' G B2018 49.084 111.268 105.524 1.00 41.04 O
ATOM 6 C5' G B2018 48.985 111.704 106.868 1.00 39.68 C
ATOM 7 C4' G B2018 50.322 111.541 107.516 1.00 41.17 C
ATOM 8 O4' G B2018 50.658 110.128 107.514 1.00 41.10 O
ATOM 9 C3' G B2018 51.446 112.238 106.763 1.00 41.86 C
ATOM 10 O3' G B2018 52.420 112.684 107.680 1.00 44.19 O
ATOM 11 C2' G B2018 51.994 111.137 105.864 1.00 41.38 C
ATOM 12 O2' G B2018 53.349 111.329 105.515 1.00 40.51 O
ATOM 13 C1' G B2018 51.826 109.906 106.747 1.00 40.76 C
ATOM 14 N9 G B2018 51.639 108.673 105.982 1.00 40.78 N
ATOM 15 C8 G B2018 50.567 108.346 105.182 1.00 40.21 C
ATOM 16 N7 G B2018 50.678 107.168 104.632 1.00 39.07 N
ATOM 17 C5 G B2018 51.895 106.686 105.095 1.00 39.32 C
ATOM 18 C6 G B2018 52.548 105.450 104.853 1.00 39.25 C
ATOM 19 O6 G B2018 52.164 104.491 104.167 1.00 38.24 O
ATOM 20 N1 G B2018 53.765 105.382 105.520 1.00 38.96 N
ATOM 21 C2 G B2018 54.279 106.361 106.326 1.00 36.55 C
ATOM 22 N2 G B2018 55.462 106.107 106.873 1.00 36.71 N
ATOM 23 N3 G B2018 53.679 107.502 106.573 1.00 36.79 N
ATOM 24 C4 G B2018 52.501 107.603 105.927 1.00 39.19 C
ATOM 25 P G B2019 52.807 114.238 107.721 1.00 45.89 P
ATOM 26 OP1 G B2019 53.333 114.611 106.380 1.00 44.21 O
ATOM 27 OP2 G B2019 53.632 114.472 108.928 1.00 47.43 O
ATOM 28 O5' G B2019 51.424 114.989 107.972 1.00 45.39 O
TER

Atoms:
OP1: (42.522,117.771,93.082)
OP2: (42.305,115.449,94.124)
C3': (46.122,118.122,97.059)
C1': (44.997,116.598,98.466)
C5': (43.867,118.514,95.783)
O4': (44.022,117.503,97.995)
C8: (43.401,114.748,97.767)
O2': (47.328,116.243,98.081)
C6: (43.940,112.111,100.004)
C5: (43.841,113.243,99.195)
C4: (44.667,114.308,99.496)
P: (42.397,116.913,94.283)
C4': (44.637,118.466,97.093)
C2': (46.132,116.649,97.450)
C2: (45.565,113.241,101.190)
N1: (44.831,112.136,101.015)
N3: (45.561,114.374,100.493)
N6: (43.204,111.019,99.831)
N7: (43.044,113.535,98.103)
N9: (44.379,115.277,98.568)
O5': (43.600,117.191,95.294)
O3': (46.770,118.866,98.084)
OP1: (46.840,110.648,104.677)
OP2: (47.718,113.066,104.481)
C3': (51.446,112.238,106.763)
C1': (51.826,109.906,106.747)
C5': (48.985,111.704,106.868)
O6: (52.164,104.491,104.167)
O4': (50.658,110.128,107.514)
C8: (50.567,108.346,105.182)
C2: (54.279,106.361,106.326)
C6: (52.548,105.450,104.853)
C5: (51.895,106.686,105.095)
C4: (52.501,107.603,105.927)
P: (47.969,111.602,104.450)
C4': (50.322,111.541,107.516)
C2': (51.994,111.137,105.864)
O2': (53.349,111.329,105.515)
N1: (53.765,105.382,105.520)
N2: (55.462,106.107,106.873)
N3: (53.679,107.502,106.573)
N7: (50.678,107.168,104.632)
N9: (51.639,108.673,105.982)
O5': (49.084,111.268,105.524)
O3': (52.420,112.684,107.680)
Image (generated by PyMOL):
PyMOL image
show in jmol