Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0268:0269
Extra
PDB:
ATOM 1 O3' C A 267 78.643 94.873 -19.947 1.00109.77 O
ATOM 2 P C A 268 77.276 95.688 -20.142 1.00111.79 P
ATOM 3 OP1 C A 268 76.724 95.322 -21.471 1.00112.40 O
ATOM 4 OP2 C A 268 77.530 97.120 -19.819 1.00111.38 O
ATOM 5 O5' C A 268 76.325 95.087 -19.016 1.00111.73 O
ATOM 6 C5' C A 268 75.873 93.722 -19.084 1.00112.80 C
ATOM 7 C4' C A 268 74.762 93.494 -18.091 1.00113.53 C
ATOM 8 O4' C A 268 75.299 93.529 -16.741 1.00113.67 O
ATOM 9 C3' C A 268 73.686 94.567 -18.079 1.00114.17 C
ATOM 10 O3' C A 268 72.746 94.434 -19.136 1.00115.65 O
ATOM 11 C2' C A 268 73.088 94.399 -16.691 1.00113.95 C
ATOM 12 O2' C A 268 72.198 93.303 -16.592 1.00113.26 O
ATOM 13 C1' C A 268 74.348 94.124 -15.865 1.00114.05 C
ATOM 14 N1 C A 268 74.931 95.361 -15.292 1.00113.89 N
ATOM 15 C2 C A 268 74.492 95.798 -14.028 1.00113.50 C
ATOM 16 O2 C A 268 73.651 95.122 -13.412 1.00113.48 O
ATOM 17 N3 C A 268 74.999 96.944 -13.512 1.00113.15 N
ATOM 18 C4 C A 268 75.907 97.642 -14.198 1.00113.09 C
ATOM 19 N4 C A 268 76.369 98.772 -13.653 1.00112.15 N
ATOM 20 C5 C A 268 76.381 97.216 -15.474 1.00113.26 C
ATOM 21 C6 C A 268 75.873 96.082 -15.979 1.00113.54 C
ATOM 22 P U A 269 72.109 95.755 -19.797 1.00116.74 P
ATOM 23 OP1 U A 269 71.265 95.330 -20.944 1.00116.98 O
ATOM 24 OP2 U A 269 73.201 96.740 -20.015 1.00116.34 O
ATOM 25 O5' U A 269 71.146 96.314 -18.658 1.00117.56 O
TER
ATOM 1 O3' C B 268 72.746 94.434 -19.136 1.00115.65 O
ATOM 2 P U B 269 72.109 95.755 -19.797 1.00116.74 P
ATOM 3 OP1 U B 269 71.265 95.330 -20.944 1.00116.98 O
ATOM 4 OP2 U B 269 73.201 96.740 -20.015 1.00116.34 O
ATOM 5 O5' U B 269 71.146 96.314 -18.658 1.00117.56 O
ATOM 6 C5' U B 269 70.140 95.468 -18.074 1.00119.03 C
ATOM 7 C4' U B 269 69.684 96.020 -16.742 1.00120.33 C
ATOM 8 O4' U B 269 70.818 96.128 -15.837 1.00120.10 O
ATOM 9 C3' U B 269 69.097 97.422 -16.731 1.00121.21 C
ATOM 10 O3' U B 269 67.742 97.452 -17.178 1.00123.45 O
ATOM 11 C2' U B 269 69.222 97.786 -15.258 1.00120.67 C
ATOM 12 O2' U B 269 68.237 97.164 -14.455 1.00120.07 O
ATOM 13 C1' U B 269 70.588 97.187 -14.917 1.00120.02 C
ATOM 14 N1 U B 269 71.684 98.168 -15.009 1.00119.35 N
ATOM 15 C2 U B 269 71.957 98.934 -13.882 1.00119.10 C
ATOM 16 O2 U B 269 71.339 98.824 -12.836 1.00119.27 O
ATOM 17 N3 U B 269 72.981 99.837 -14.026 1.00118.83 N
ATOM 18 C4 U B 269 73.748 100.052 -15.148 1.00118.81 C
ATOM 19 O4 U B 269 74.657 100.883 -15.108 1.00118.18 O
ATOM 20 C5 U B 269 73.410 99.227 -16.269 1.00118.99 C
ATOM 21 C6 U B 269 72.416 98.336 -16.164 1.00119.11 C
ATOM 22 P C B 270 67.111 98.826 -17.739 1.00125.56 P
ATOM 23 OP1 C B 270 65.748 98.505 -18.236 1.00125.73 O
ATOM 24 OP2 C B 270 68.084 99.484 -18.646 1.00125.51 O
ATOM 25 O5' C B 270 66.948 99.739 -16.444 1.00127.17 O
TER
ATOM 2 P C A 268 77.276 95.688 -20.142 1.00111.79 P
ATOM 3 OP1 C A 268 76.724 95.322 -21.471 1.00112.40 O
ATOM 4 OP2 C A 268 77.530 97.120 -19.819 1.00111.38 O
ATOM 5 O5' C A 268 76.325 95.087 -19.016 1.00111.73 O
ATOM 6 C5' C A 268 75.873 93.722 -19.084 1.00112.80 C
ATOM 7 C4' C A 268 74.762 93.494 -18.091 1.00113.53 C
ATOM 8 O4' C A 268 75.299 93.529 -16.741 1.00113.67 O
ATOM 9 C3' C A 268 73.686 94.567 -18.079 1.00114.17 C
ATOM 10 O3' C A 268 72.746 94.434 -19.136 1.00115.65 O
ATOM 11 C2' C A 268 73.088 94.399 -16.691 1.00113.95 C
ATOM 12 O2' C A 268 72.198 93.303 -16.592 1.00113.26 O
ATOM 13 C1' C A 268 74.348 94.124 -15.865 1.00114.05 C
ATOM 14 N1 C A 268 74.931 95.361 -15.292 1.00113.89 N
ATOM 15 C2 C A 268 74.492 95.798 -14.028 1.00113.50 C
ATOM 16 O2 C A 268 73.651 95.122 -13.412 1.00113.48 O
ATOM 17 N3 C A 268 74.999 96.944 -13.512 1.00113.15 N
ATOM 18 C4 C A 268 75.907 97.642 -14.198 1.00113.09 C
ATOM 19 N4 C A 268 76.369 98.772 -13.653 1.00112.15 N
ATOM 20 C5 C A 268 76.381 97.216 -15.474 1.00113.26 C
ATOM 21 C6 C A 268 75.873 96.082 -15.979 1.00113.54 C
ATOM 22 P U A 269 72.109 95.755 -19.797 1.00116.74 P
ATOM 23 OP1 U A 269 71.265 95.330 -20.944 1.00116.98 O
ATOM 24 OP2 U A 269 73.201 96.740 -20.015 1.00116.34 O
ATOM 25 O5' U A 269 71.146 96.314 -18.658 1.00117.56 O
TER
ATOM 1 O3' C B 268 72.746 94.434 -19.136 1.00115.65 O
ATOM 2 P U B 269 72.109 95.755 -19.797 1.00116.74 P
ATOM 3 OP1 U B 269 71.265 95.330 -20.944 1.00116.98 O
ATOM 4 OP2 U B 269 73.201 96.740 -20.015 1.00116.34 O
ATOM 5 O5' U B 269 71.146 96.314 -18.658 1.00117.56 O
ATOM 6 C5' U B 269 70.140 95.468 -18.074 1.00119.03 C
ATOM 7 C4' U B 269 69.684 96.020 -16.742 1.00120.33 C
ATOM 8 O4' U B 269 70.818 96.128 -15.837 1.00120.10 O
ATOM 9 C3' U B 269 69.097 97.422 -16.731 1.00121.21 C
ATOM 10 O3' U B 269 67.742 97.452 -17.178 1.00123.45 O
ATOM 11 C2' U B 269 69.222 97.786 -15.258 1.00120.67 C
ATOM 12 O2' U B 269 68.237 97.164 -14.455 1.00120.07 O
ATOM 13 C1' U B 269 70.588 97.187 -14.917 1.00120.02 C
ATOM 14 N1 U B 269 71.684 98.168 -15.009 1.00119.35 N
ATOM 15 C2 U B 269 71.957 98.934 -13.882 1.00119.10 C
ATOM 16 O2 U B 269 71.339 98.824 -12.836 1.00119.27 O
ATOM 17 N3 U B 269 72.981 99.837 -14.026 1.00118.83 N
ATOM 18 C4 U B 269 73.748 100.052 -15.148 1.00118.81 C
ATOM 19 O4 U B 269 74.657 100.883 -15.108 1.00118.18 O
ATOM 20 C5 U B 269 73.410 99.227 -16.269 1.00118.99 C
ATOM 21 C6 U B 269 72.416 98.336 -16.164 1.00119.11 C
ATOM 22 P C B 270 67.111 98.826 -17.739 1.00125.56 P
ATOM 23 OP1 C B 270 65.748 98.505 -18.236 1.00125.73 O
ATOM 24 OP2 C B 270 68.084 99.484 -18.646 1.00125.51 O
ATOM 25 O5' C B 270 66.948 99.739 -16.444 1.00127.17 O
TER
Atoms:
C2: (74.492,95.798,-14.028)
OP1: (76.724,95.322,-21.471)
OP2: (77.530,97.120,-19.819)
C4: (75.907,97.642,-14.198)
O5': (76.325,95.087,-19.016)
C3': (73.686,94.567,-18.079)
C1': (74.348,94.124,-15.865)
O4': (75.299,93.529,-16.741)
C5': (75.873,93.722,-19.084)
P: (77.276,95.688,-20.142)
O2: (73.651,95.122,-13.412)
C4': (74.762,93.494,-18.091)
C2': (73.088,94.399,-16.691)
O2': (72.198,93.303,-16.592)
N1: (74.931,95.361,-15.292)
N3: (74.999,96.944,-13.512)
N4: (76.369,98.772,-13.653)
C6: (75.873,96.082,-15.979)
C5: (76.381,97.216,-15.474)
O3': (72.746,94.434,-19.136)
OP1: (76.724,95.322,-21.471)
OP2: (77.530,97.120,-19.819)
C4: (75.907,97.642,-14.198)
O5': (76.325,95.087,-19.016)
C3': (73.686,94.567,-18.079)
C1': (74.348,94.124,-15.865)
O4': (75.299,93.529,-16.741)
C5': (75.873,93.722,-19.084)
P: (77.276,95.688,-20.142)
O2: (73.651,95.122,-13.412)
C4': (74.762,93.494,-18.091)
C2': (73.088,94.399,-16.691)
O2': (72.198,93.303,-16.592)
N1: (74.931,95.361,-15.292)
N3: (74.999,96.944,-13.512)
N4: (76.369,98.772,-13.653)
C6: (75.873,96.082,-15.979)
C5: (76.381,97.216,-15.474)
O3': (72.746,94.434,-19.136)
C4: (73.748,100.052,-15.148)
N3: (72.981,99.837,-14.026)
OP1: (71.265,95.330,-20.944)
OP2: (73.201,96.740,-20.015)
C2: (71.957,98.934,-13.882)
C1': (70.588,97.187,-14.917)
C3': (69.097,97.422,-16.731)
O5': (71.146,96.314,-18.658)
O4': (70.818,96.128,-15.837)
C5': (70.140,95.468,-18.074)
P: (72.109,95.755,-19.797)
C4': (69.684,96.020,-16.742)
C2': (69.222,97.786,-15.258)
O2': (68.237,97.164,-14.455)
N1: (71.684,98.168,-15.009)
O4: (74.657,100.883,-15.108)
O2: (71.339,98.824,-12.836)
C6: (72.416,98.336,-16.164)
C5: (73.410,99.227,-16.269)
O3': (67.742,97.452,-17.178)
N3: (72.981,99.837,-14.026)
OP1: (71.265,95.330,-20.944)
OP2: (73.201,96.740,-20.015)
C2: (71.957,98.934,-13.882)
C1': (70.588,97.187,-14.917)
C3': (69.097,97.422,-16.731)
O5': (71.146,96.314,-18.658)
O4': (70.818,96.128,-15.837)
C5': (70.140,95.468,-18.074)
P: (72.109,95.755,-19.797)
C4': (69.684,96.020,-16.742)
C2': (69.222,97.786,-15.258)
O2': (68.237,97.164,-14.455)
N1: (71.684,98.168,-15.009)
O4: (74.657,100.883,-15.108)
O2: (71.339,98.824,-12.836)
C6: (72.416,98.336,-16.164)
C5: (73.410,99.227,-16.269)
O3': (67.742,97.452,-17.178)
Image (generated by PyMOL):