ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A618:A2018

Extra

PDB:
ATOM 1 O3' A A 617 41.134 117.488 95.380 1.00 29.48 O
ATOM 2 P A A 618 42.458 117.012 94.622 1.00 30.04 P
ATOM 3 OP1 A A 618 42.751 117.906 93.477 1.00 29.35 O
ATOM 4 OP2 A A 618 42.224 115.584 94.370 1.00 31.25 O
ATOM 5 O5' A A 618 43.596 117.204 95.726 1.00 31.14 O
ATOM 6 C5' A A 618 43.937 118.533 96.184 1.00 31.65 C
ATOM 7 C4' A A 618 44.748 118.522 97.481 1.00 33.01 C
ATOM 8 O4' A A 618 44.185 117.630 98.478 1.00 33.20 O
ATOM 9 C3' A A 618 46.227 118.181 97.399 1.00 33.02 C
ATOM 10 O3' A A 618 46.921 118.927 98.401 1.00 33.36 O
ATOM 11 C2' A A 618 46.243 116.718 97.810 1.00 35.25 C
ATOM 12 O2' A A 618 47.491 116.316 98.356 1.00 35.22 O
ATOM 13 C1' A A 618 45.155 116.697 98.882 1.00 33.61 C
ATOM 14 N9 A A 618 44.498 115.400 98.959 1.00 34.56 N
ATOM 15 C8 A A 618 43.504 114.908 98.162 1.00 33.96 C
ATOM 16 N7 A A 618 43.090 113.721 98.509 1.00 34.40 N
ATOM 17 C5 A A 618 43.870 113.407 99.605 1.00 33.55 C
ATOM 18 C6 A A 618 43.907 112.292 100.438 1.00 32.94 C
ATOM 19 N6 A A 618 43.083 111.251 100.308 1.00 33.03 N
ATOM 20 N1 A A 618 44.822 112.281 101.430 1.00 32.02 N
ATOM 21 C2 A A 618 45.626 113.339 101.567 1.00 32.50 C
ATOM 22 N3 A A 618 45.674 114.457 100.855 1.00 34.39 N
ATOM 23 C4 A A 618 44.758 114.424 99.879 1.00 34.73 C
ATOM 24 P A A 619 47.027 120.523 98.277 1.00 34.68 P
ATOM 25 OP1 A A 619 45.923 121.116 99.067 1.00 34.43 O
ATOM 26 OP2 A A 619 47.152 120.837 96.842 1.00 35.62 O
ATOM 27 O5' A A 619 48.393 120.907 98.986 1.00 33.36 O
TER

ATOM 1 O3' C B2017 48.901 111.066 103.682 1.00 38.89 O
ATOM 2 P G B2018 48.091 111.741 104.902 1.00 43.34 P
ATOM 3 OP1 G B2018 47.315 110.670 105.573 1.00 41.56 O
ATOM 4 OP2 G B2018 47.410 112.995 104.465 1.00 41.08 O
ATOM 5 O5' G B2018 49.248 112.215 105.877 1.00 40.70 O
ATOM 6 C5' G B2018 49.172 112.016 107.290 1.00 38.76 C
ATOM 7 C4' G B2018 50.524 111.651 107.817 1.00 37.70 C
ATOM 8 O4' G B2018 50.744 110.229 107.695 1.00 36.33 O
ATOM 9 C3' G B2018 51.660 112.339 107.078 1.00 37.38 C
ATOM 10 O3' G B2018 52.624 112.741 108.030 1.00 39.66 O
ATOM 11 C2' G B2018 52.194 111.241 106.157 1.00 35.96 C
ATOM 12 O2' G B2018 53.563 111.395 105.877 1.00 33.82 O
ATOM 13 C1' G B2018 51.945 109.995 106.997 1.00 36.17 C
ATOM 14 N9 G B2018 51.805 108.736 106.273 1.00 36.93 N
ATOM 15 C8 G B2018 50.754 108.352 105.473 1.00 36.14 C
ATOM 16 N7 G B2018 50.884 107.143 104.997 1.00 34.71 N
ATOM 17 C5 G B2018 52.105 106.706 105.498 1.00 36.81 C
ATOM 18 C6 G B2018 52.783 105.461 105.339 1.00 37.21 C
ATOM 19 O6 G B2018 52.437 104.465 104.684 1.00 39.03 O
ATOM 20 N1 G B2018 53.977 105.440 106.053 1.00 34.89 N
ATOM 21 C2 G B2018 54.456 106.465 106.819 1.00 33.54 C
ATOM 22 N2 G B2018 55.602 106.235 107.445 1.00 33.32 N
ATOM 23 N3 G B2018 53.854 107.623 106.967 1.00 34.49 N
ATOM 24 C4 G B2018 52.688 107.678 106.287 1.00 36.99 C
ATOM 25 P G B2019 52.953 114.300 108.236 1.00 39.00 P
ATOM 26 OP1 G B2019 53.728 114.730 107.055 1.00 37.70 O
ATOM 27 OP2 G B2019 53.511 114.489 109.590 1.00 39.79 O
ATOM 28 O5' G B2019 51.548 115.040 108.220 1.00 38.38 O
TER

Atoms:
OP1: (42.751,117.906,93.477)
OP2: (42.224,115.584,94.370)
C3': (46.227,118.181,97.399)
C1': (45.155,116.697,98.882)
C5': (43.937,118.533,96.184)
O4': (44.185,117.630,98.478)
C8: (43.504,114.908,98.162)
O2': (47.491,116.316,98.356)
C6: (43.907,112.292,100.438)
C5: (43.870,113.407,99.605)
C4: (44.758,114.424,99.879)
P: (42.458,117.012,94.622)
C4': (44.748,118.522,97.481)
C2': (46.243,116.718,97.810)
C2: (45.626,113.339,101.567)
N1: (44.822,112.281,101.430)
N3: (45.674,114.457,100.855)
N6: (43.083,111.251,100.308)
N7: (43.090,113.721,98.509)
N9: (44.498,115.400,98.959)
O5': (43.596,117.204,95.726)
O3': (46.921,118.927,98.401)
OP1: (47.315,110.670,105.573)
OP2: (47.410,112.995,104.465)
C3': (51.660,112.339,107.078)
C1': (51.945,109.995,106.997)
C5': (49.172,112.016,107.290)
O6: (52.437,104.465,104.684)
O4': (50.744,110.229,107.695)
C8: (50.754,108.352,105.473)
C2: (54.456,106.465,106.819)
C6: (52.783,105.461,105.339)
C5: (52.105,106.706,105.498)
C4: (52.688,107.678,106.287)
P: (48.091,111.741,104.902)
C4': (50.524,111.651,107.817)
C2': (52.194,111.241,106.157)
O2': (53.563,111.395,105.877)
N1: (53.977,105.440,106.053)
N2: (55.602,106.235,107.445)
N3: (53.854,107.623,106.967)
N7: (50.884,107.143,104.997)
N9: (51.805,108.736,106.273)
O5': (49.248,112.215,105.877)
O3': (52.624,112.741,108.030)
Image (generated by PyMOL):
PyMOL image
show in jmol