ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0447:0452

Extra

PDB:
ATOM 1 O3' G A 446 48.957 134.748 56.260 1.00 32.81 O
ATOM 2 P A A 447 47.529 134.731 55.531 1.00 35.28 P
ATOM 3 OP1 A A 447 46.527 134.988 56.582 1.00 32.28 O
ATOM 4 OP2 A A 447 47.427 133.500 54.712 1.00 37.11 O
ATOM 5 O5' A A 447 47.570 135.994 54.565 1.00 34.41 O
ATOM 6 C5' A A 447 47.452 137.328 55.086 1.00 36.14 C
ATOM 7 C4' A A 447 47.732 138.334 53.998 1.00 38.08 C
ATOM 8 O4' A A 447 49.065 138.113 53.480 1.00 39.15 O
ATOM 9 C3' A A 447 46.833 138.241 52.781 1.00 37.56 C
ATOM 10 O3' A A 447 45.658 139.002 53.011 1.00 37.59 O
ATOM 11 C2' A A 447 47.696 138.855 51.685 1.00 38.03 C
ATOM 12 O2' A A 447 47.696 140.264 51.726 1.00 38.17 O
ATOM 13 C1' A A 447 49.091 138.388 52.096 1.00 38.07 C
ATOM 14 N9 A A 447 49.595 137.199 51.419 1.00 38.43 N
ATOM 15 C8 A A 447 49.485 135.894 51.830 1.00 38.88 C
ATOM 16 N7 A A 447 50.098 135.042 51.046 1.00 40.46 N
ATOM 17 C5 A A 447 50.635 135.837 50.042 1.00 39.70 C
ATOM 18 C6 A A 447 51.418 135.536 48.914 1.00 38.42 C
ATOM 19 N6 A A 447 51.804 134.303 48.589 1.00 38.35 N
ATOM 20 N1 A A 447 51.798 136.560 48.122 1.00 37.93 N
ATOM 21 C2 A A 447 51.413 137.797 48.447 1.00 39.80 C
ATOM 22 N3 A A 447 50.678 138.209 49.481 1.00 40.46 N
ATOM 23 C4 A A 447 50.319 137.167 50.252 1.00 39.85 C
ATOM 24 P A A 448 44.223 138.286 52.989 1.00 39.46 P
ATOM 25 OP1 A A 448 43.565 138.508 54.297 1.00 37.21 O
ATOM 26 OP2 A A 448 44.370 136.907 52.461 1.00 38.21 O
ATOM 27 O5' A A 448 43.401 139.139 51.935 1.00 39.12 O
TER

ATOM 1 O3' A B 451 52.423 142.303 49.516 1.00 46.00 O
ATOM 2 P G B 452 52.878 142.064 48.012 1.00 46.93 P
ATOM 3 OP1 G B 452 53.276 143.391 47.493 1.00 46.73 O
ATOM 4 OP2 G B 452 51.810 141.297 47.325 1.00 46.45 O
ATOM 5 O5' G B 452 54.166 141.138 48.184 1.00 43.23 O
ATOM 6 C5' G B 452 55.443 141.702 48.531 1.00 39.65 C
ATOM 7 C4' G B 452 55.473 142.059 49.994 1.00 40.20 C
ATOM 8 O4' G B 452 55.304 140.858 50.798 1.00 40.52 O
ATOM 9 C3' G B 452 56.751 142.719 50.510 1.00 39.96 C
ATOM 10 O3' G B 452 56.355 143.614 51.551 1.00 41.61 O
ATOM 11 C2' G B 452 57.505 141.543 51.113 1.00 37.41 C
ATOM 12 O2' G B 452 58.442 141.951 52.082 1.00 37.82 O
ATOM 13 C1' G B 452 56.344 140.793 51.755 1.00 37.01 C
ATOM 14 N9 G B 452 56.550 139.402 52.142 1.00 32.71 N
ATOM 15 C8 G B 452 57.161 138.408 51.419 1.00 33.42 C
ATOM 16 N7 G B 452 57.153 137.254 52.028 1.00 32.02 N
ATOM 17 C5 G B 452 56.505 137.504 53.226 1.00 30.95 C
ATOM 18 C6 G B 452 56.186 136.632 54.291 1.00 31.27 C
ATOM 19 O6 G B 452 56.422 135.420 54.389 1.00 30.91 O
ATOM 20 N1 G B 452 55.522 137.301 55.317 1.00 29.79 N
ATOM 21 C2 G B 452 55.210 138.637 55.313 1.00 28.93 C
ATOM 22 N2 G B 452 54.592 139.098 56.402 1.00 29.28 N
ATOM 23 N3 G B 452 55.492 139.459 54.317 1.00 28.10 N
ATOM 24 C4 G B 452 56.136 138.829 53.315 1.00 30.46 C
ATOM 25 P U B 453 57.369 144.736 52.090 1.00 44.03 P
ATOM 26 OP1 U B 453 58.187 145.237 50.954 1.00 41.83 O
ATOM 27 OP2 U B 453 58.049 144.210 53.310 1.00 43.34 O
ATOM 28 O5' U B 453 56.382 145.888 52.559 1.00 39.82 O
TER

Atoms:
OP1: (46.527,134.988,56.582)
OP2: (47.427,133.500,54.712)
C3': (46.833,138.241,52.781)
C1': (49.091,138.388,52.096)
C5': (47.452,137.328,55.086)
O4': (49.065,138.113,53.480)
C8: (49.485,135.894,51.830)
O2': (47.696,140.264,51.726)
C6: (51.418,135.536,48.914)
C5: (50.635,135.837,50.042)
C4: (50.319,137.167,50.252)
P: (47.529,134.731,55.531)
C4': (47.732,138.334,53.998)
C2': (47.696,138.855,51.685)
C2: (51.413,137.797,48.447)
N1: (51.798,136.560,48.122)
N3: (50.678,138.209,49.481)
N6: (51.804,134.303,48.589)
N7: (50.098,135.042,51.046)
N9: (49.595,137.199,51.419)
O5': (47.570,135.994,54.565)
O3': (45.658,139.002,53.011)
OP1: (53.276,143.391,47.493)
OP2: (51.810,141.297,47.325)
C3': (56.751,142.719,50.510)
C1': (56.344,140.793,51.755)
C5': (55.443,141.702,48.531)
O6: (56.422,135.420,54.389)
O4': (55.304,140.858,50.798)
C8: (57.161,138.408,51.419)
C2: (55.210,138.637,55.313)
C6: (56.186,136.632,54.291)
C5: (56.505,137.504,53.226)
C4: (56.136,138.829,53.315)
P: (52.878,142.064,48.012)
C4': (55.473,142.059,49.994)
C2': (57.505,141.543,51.113)
O2': (58.442,141.951,52.082)
N1: (55.522,137.301,55.317)
N2: (54.592,139.098,56.402)
N3: (55.492,139.459,54.317)
N7: (57.153,137.254,52.028)
N9: (56.550,139.402,52.142)
O5': (54.166,141.138,48.184)
O3': (56.355,143.614,51.551)
Image (generated by PyMOL):
PyMOL image
show in jmol